BAC Information

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BAC

Clone NameB6Ng01-078B18
Chromosome2 (Build37)
Map Location 120,599,665 - 120,740,116
singlet/doubletdoublet
Overlap geneTtbk2, Ubr1
Upstream geneRpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1
Downstream geneTmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078B18.bB6Ng01-078B18.g
ACCDH893902DH893903
length5091,067
definitionDH893902|Mus musculus domesticus DNA, BAC clone: B6Ng01-078B18, 5' end.DH893903|Mus musculus domesticus DNA, BAC clone: B6Ng01-078B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,599,665 - 120,600,179)(120,739,041 - 120,740,116)
sequence
attcatattctattaccaattcttctgagtgcatcacattgtttaaaggc
attaaatatatttcccataaatcatctggtaaacatctgtatgtctgcat
aggtgcgtatcaatccaaatgcacaacacatacacgagagagagagagag
agagagagagagagagagagagagagagagagagagagagagagagatcc
tgggttatattttcttttttttttctttttttgtttgtttgtttttcgag
acagggtttctctgtgtagccctggctgtcctggaacacactttgttgac
caggctggcatcgaactcagaaatccacctgcctctgcctcccgagtgct
gggattaaaggggtgtgccaccacgcccggcaggttatattttcaaaacc
tcaaaaacagccaccaccaagaagcaaaaacaacataggcttagatgtag
cacagctggatgaataactgcctaacatgcttaaggccttggggtatgat
gcccattac
gaattctctggctttggtcatggtaggcccaggaattgtgatggagagga
aagtaaagaaagctcatgaaaaaatatacacaagcatggaaggtgtccct
gctcttccttctccttttccaacagtctggcagaaagcaagggcaggatt
ccctctctccccggccttcctagttctgctctcccatccttccactctct
gccccactccgccctcccctgctgttcagccatggctggctggggagaat
ggcatggtaattatggctaaggctccctctcccttcttgagagatgctgc
atcatacctttaaagatggtgtgagttctggtaaaccaaggagtgaagac
aagtttaagacctacagaatgtcatctgtccttatttccttttgtaatac
ttgtggttgagattttgtagaaatttaattatgatgtaccctgtactttt
gtaattggagcacattatggtgattaaaggtaactgtattcctggcaagc
ctcttattgattgcattaactgcaaagatgctggaagtagaatccatttg
attgatgagcgtgtaatctattcctatgctattttaggtactactctcta
actctttttatttgaattccagttaaaaagtttccaacatatcttagctc
cttctccaagttagaaaaaagaaaaaggaaacaaacaaaaccaaagtctc
ctcatgctagtgataagtccataacacattgcaacatggatttttgtgtt
tttttttttttgtttgtttttgttttgtttttcttttctttcttgaaaca
gggtttcttttgtatagcctggctgtcttggaacttgctctgtagaccaa
gctggccttgaactcacagagatccaccagtctctgcctcctgagtgtta
ggattaaaggcatgtgtcaccaccgccccagtgcaacatgttttttacag
gcatatatttattttgttggttggttttcacggtgctggtggagtaaacc
aggagcatgtaatgctaacaggaactctgccacttaggcacacttacagc
ccctttgttctactttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120599665_120600179
seq2: B6Ng01-078B18.b_44_558

seq1  GAATTCATTCATATTCTATTACCAATTCTTCTGAGTGCATCACATTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATATTCTATTACCAATTCTTCTGAGTGCATCACATTGTTT  50

seq1  AAAGGCATTAAATATATTTCCCATAAATCATCTGGTAAACATCTGTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATTAAATATATTTCCCATAAATCATCTGGTAAACATCTGTATGT  100

seq1  CTGCATAGGTGCGTATCAATCCAAATGCACAACACATACACGAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGGTGCGTATCAATCCAAATGCACAACACATACACGAGAGAGAG  150

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  200

seq1  AGATCCTGGGTTATATTTTCTTTTTTTTTTCTTTTTTTGTTTGTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGGGTTATATTTTCTTTTTTTTTTCTTTTTTTGTTTGTTTGTTT  250

seq1  TTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACACACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACACACTTT  300

seq1  GTTGACCAGGCTGGCATCGAACTCAGAAATCCACCTGCCTCTGCCTCCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCAGGCTGGCATCGAACTCAGAAATCCACCTGCCTCTGCCTCCCG  350

seq1  AGTGCTGGGATTAAAGGGGTGTGCCACCACGCCCGGCAGGTTATATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGGGTGTGCCACCACGCCCGGCAGGTTATATTTTC  400

seq1  AAAACCACAAAAACAGCCACCACCAAGAAGCAAAAACAACATAGGCTGAG  450
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAACCTCAAAAACAGCCACCACCAAGAAGCAAAAACAACATAGGCTTAG  450

seq1  ATGCAGCACAGCTGGAAGAATAACTGCCTAACATGCATAAGGCCTTGGGG  500
      ||| |||||||||||| ||||||||||||||||||| |||||||||||||
seq2  ATGTAGCACAGCTGGATGAATAACTGCCTAACATGCTTAAGGCCTTGGGG  500

seq1  TATGATGCCCAGTAC  515
      ||||||||||| |||
seq2  TATGATGCCCATTAC  515

seq1: chr2_120739041_120740116
seq2: B6Ng01-078B18.g_68_1134 (reverse)

seq1  GAAAGAAAGAACAAAGAGAGCTGTAAGTGTGGCTTAGTGGCAGAGTTCCT  50
      |||||  ||||||||| | |||||||||||| || |||||||||||||||
seq2  GAAAG-TAGAACAAAG-GGGCTGTAAGTGTGCCTAAGTGGCAGAGTTCCT  48

seq1  GTCTAGCATATACATGCTCCTGGGTTCACT-CACCAGCACCGTGAAAACC  99
      || |||||| ||||||||||| |||| ||| |||||||||||||||||||
seq2  GT-TAGCAT-TACATGCTCCT-GGTTTACTCCACCAGCACCGTGAAAACC  95

seq1  AAACCAAACAAAATAAATATATGCCTGT-AAAAACATGGTGCACT-GGGC  147
      ||  | |||||||||||||||||||||| ||||||||| |||||| ||||
seq2  AA--CCAACAAAATAAATATATGCCTGTAAAAAACATGTTGCACTGGGGC  143

seq1  GGTGGTGACACATGCCTTTAATCCTAACACTCAGGAGGCAGAGACTGGTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGACACATGCCTTTAATCCTAACACTCAGGAGGCAGAGACTGGTG  193

seq1  GATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGAC  247
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  GATCTCTGTGAGTTCAAGGCCAGCTTGGTCTACAGAGCAAGTTCCAAGAC  243

seq1  AGCCAGGCTATAC-AAAGAAACCCTGTTTCAAAGAAAAGAAAAGAAAAAA  296
      ||||||||||||| ||||||||||||||||||   |||||||||  ||||
seq2  AGCCAGGCTATACAAAAGAAACCCTGTTTCAA--GAAAGAAAAG--AAAA  289

seq1  ACAAAACAAAAACAAACAAAAAAAAAAAAAACACAAAAATACCATGTTGC  346
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  ACAAAACAAAAACAAAC-AAAAAAAAAAAAACACAAAAAT-CCATGTTGC  337

seq1  AATGTGTTATGGACTTATCACTAGCATGAGGAGACTTTGGTTTTGTTTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTATGGACTTATCACTAGCATGAGGAGACTTTGGTTTTGTTTGT  387

seq1  TTCCTTTTTCTTTTTTCTAACTTGGAGAAGGAGCTAAGATATGTTGGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTCTTTTTTCTAACTTGGAGAAGGAGCTAAGATATGTTGGAAA  437

seq1  CTTTTTAACTGGAATTCAAATAAAAAGAGTTAGAGAGTAGTACCTAAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAACTGGAATTCAAATAAAAAGAGTTAGAGAGTAGTACCTAAAAT  487

seq1  AGCATAGGAATAGATTACACGCTCATCAATCAAATGGATTCTACTTCCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGAATAGATTACACGCTCATCAATCAAATGGATTCTACTTCCAG  537

seq1  CATCTTTGCAGTTAATGCAATCAATAAGAGGCTTGCCAGGAATACAGTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGCAGTTAATGCAATCAATAAGAGGCTTGCCAGGAATACAGTTA  587

seq1  CCTTTAATCACCATAATGTGCTCCAATTACAAAAGTACAGGGTACATCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCACCATAATGTGCTCCAATTACAAAAGTACAGGGTACATCAT  637

seq1  AATTAAATTTCTACAAAATCTCAACCACAAGTATTACAAAAGGAAATAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTTCTACAAAATCTCAACCACAAGTATTACAAAAGGAAATAAG  687

seq1  GACAGATGACATTCTGTAGGTCTTAAACTTGTCTTCACTCCTTGGTTTAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGACATTCTGTAGGTCTTAAACTTGTCTTCACTCCTTGGTTTAC  737

seq1  CAGAACTCACACCATCTTTAAAGGTATGATGCAGCATCTCTCAAGAAGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCACACCATCTTTAAAGGTATGATGCAGCATCTCTCAAGAAGGG  787

seq1  AGAGGGAGCCTTAGCCATAATTACCATGCCATTCTCCCCAGCCAGCCATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGCCTTAGCCATAATTACCATGCCATTCTCCCCAGCCAGCCATG  837

seq1  GCTGAACAGCAGGGGAGGGCGGAGTGGGGCAGAGAGTGGAAGGATGGGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACAGCAGGGGAGGGCGGAGTGGGGCAGAGAGTGGAAGGATGGGAG  887

seq1  AGCAGAACTAGGAAGGCCGGGGAGAGAGGGAATCCTGCCCTTGCTTTCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACTAGGAAGGCCGGGGAGAGAGGGAATCCTGCCCTTGCTTTCTG  937

seq1  CCAGACTGTTGGAAAAGGAGAAGGAAGAGCAGGGACACCTTCCATGCTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGTTGGAAAAGGAGAAGGAAGAGCAGGGACACCTTCCATGCTTG  987

seq1  TGTATATTTTTTCATGAGCTTTCTTTACTTTCCTCTCCATCACAATTCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTTTTCATGAGCTTTCTTTACTTTCCTCTCCATCACAATTCCT  1037

seq1  GGGCCTACCATGACCAAAGCCAGAGAATTC  1076
      ||||||||||||||||||||||||||||||
seq2  GGGCCTACCATGACCAAAGCCAGAGAATTC  1067