BAC Information

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BAC

Clone NameB6Ng01-078C07
Chromosome2 (Build37)
Map Location 13,268,898 - 13,304,512
singlet/doubletdoublet
Overlap geneCubn
Upstream gene2310047O13Rik, LOC100040837, Pter, C1ql3, Rsu1
Downstream geneTrdmt1, Vim, St8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078C07.bB6Ng01-078C07.g
ACCDH893925DH893926
length1,1511,093
definitionDH893925|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C07, 5' end.DH893926|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,268,898 - 13,270,071)(13,303,407 - 13,304,512)
sequence
gaattccagacttatctcactcaaagggccttcttttttctctgtagaat
ttctctgtagaatccctgacattttggtataggtaaaatttaatactcgc
cctatattctctaaacattgtagctatttattctatttgatggctttctt
ggttatagtatctatgaaattctatacaaaatgtatggagctagtataaa
aataaaacagtaatttcagagtttaaggagtggtttctacaatgtttctt
accatcttttatgatcagcttgtcataggaacaagatagctgagcttcaa
tgtccatggagagaatgttgagttccacagtagaatcaggagcataaatt
atccatatacagtcagcaccattaccatatggtccaggccaacccgggga
gaaaaaaaagacaggggtgtctcctgtcaccatataccctccacaagctc
ctgtgaaatgaaaaacaacgtctttaagcacttgtcctagaagtgcttca
aaggggctgcacattgggattgagaataatacacagttaaaagcatgtcc
tgctcttccaagagaccctagttctattcccaatatctacatcatgcagc
tcacaaccacctcgatcttcaggaaactcaatctctcttctggcctgcaa
gtgcacaaacatacacaacacaacacaacatatcacacaccattcctaga
aaaaaattccactatattgccaaacacacctggagcaatggtgggcaggg
ttacattagaaacatctactgcaaaccactccagaaggaatccccttcct
gacttggaagagtcagaagaaaactggaatgtcagagagtttctgctgga
gctaaaggattctctttgggtaccacagtaagtgccaatcagacgggaat
gaatgtcaaacccatcataaatctgcatgaaaaaaaaagcacatacacat
catcattaggcactacacacactttcttcatgagagcaaaatttaaagaa
tggttgtatttatgatttaccaaagtagaaagaatatcaggaaatctttg
tttaaaacaaaaagtacgtttgaacatattattataactatttagggttt
cataagcttgtttgggatatttatgacatcatgtagactatatagctgac
t
gaattctcttgtatatcctcatcttataagcacagacaggaaacttagag
gactcgttgacttgtccaaggtcccatagctgtttcctaggacagagatg
tgacatgaggccaccttaagtcacttccttaatgccaagagagtatggag
ctatgtgaaatctctctagagtgaattacatattaatttatttgtatagc
attcaggttaatccctctgcccaaaaacattgctgaaattttctatcagt
tgtttgtatgatcataaatccaaggagcgctgacagatacttggtaacat
tgtaagaattaaatacaacttatggaatgaggtctacctagaatattaac
aattgcagagccagacattaagtaatttataacatcataagctattggac
taggaaacatttcaaaggcaaggatgattcttagagcataggtttgaaag
aacccatgaaaaaatgaattcacctgtatttaggtttcctgctgttttta
ttattttgagacagggtcatatatagatcatgatgactgcagactttcca
tgtattaacagataactttgaacttctgatccctcttctccacctctggg
taggattatgggatgcatggctatgcacagtgtattcagtgctggagttt
gaaactaggttcaagtgcatgttagacaagcgctctaccagctgaattat
accctacattattattttaattaacttttggcaccaatatttatagtatt
taatgtattatgctagtattacccatgttcccttatttatgttgggataa
atgatttaatatgattagttctttgatggctttagcatagaaccaataca
atagctaaaccgagtagggtattatctgcctgtgcttggcaccagactgc
ttacatttttatataacaggatatctcgagtggctgaactctgtctccta
cttgcagttgcgtgggattttccaggtttcagagagaaattcattctcca
aattacccaacactacagagctaacaccggagtgctcttggatcatcaag
ttgagaaatattcacgtgtttctttgaaaataactgaccttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_13268898_13270071
seq2: B6Ng01-078C07.b_46_1196

seq1  GAATTCCAGACTTATCTCACTCAAAGGGCCTTCTTTTTTCTCTGTAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACTTATCTCACTCAAAGGGCCTTCTTTTTTCTCTGTAGAAT  50

seq1  TTCTCTGTAGAATCCCTGACATTTTGGTATAGGTAAAATTTAATACTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTAGAATCCCTGACATTTTGGTATAGGTAAAATTTAATACTCGC  100

seq1  CCTATATTCTCTAAACATTGTAGCTATTTATTCTATTTGATGGCTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTCTCTAAACATTGTAGCTATTTATTCTATTTGATGGCTTTCTT  150

seq1  GGTTATAGTATCTATGAAATTCTATACAAAATGTATGGAGCTAGTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAGTATCTATGAAATTCTATACAAAATGTATGGAGCTAGTATAAA  200

seq1  AATAAAACAGTAATTTCAGAGTTTAAGGAGTGGTTTCTACAATGTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAGTAATTTCAGAGTTTAAGGAGTGGTTTCTACAATGTTTCTT  250

seq1  ACCATCTTTTATGATCAGCTTGTCATAGGAACAAGATAGCTGAGCTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTTATGATCAGCTTGTCATAGGAACAAGATAGCTGAGCTTCAA  300

seq1  TGTCCATGGAGAGAATGTTGAGTTCCACAGTAGAATCAGGAGCATAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGGAGAGAATGTTGAGTTCCACAGTAGAATCAGGAGCATAAATT  350

seq1  ATCCATATACAGTCAGCACCATTACCATATGGTCCAGGCCAACCCGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATACAGTCAGCACCATTACCATATGGTCCAGGCCAACCCGGGGA  400

seq1  GAAAAAAAAGACAGGGGTGTCTCCTGTCACCATATACCCTCCACAAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAGACAGGGGTGTCTCCTGTCACCATATACCCTCCACAAGCTC  450

seq1  CTGTGAAATGAAAAACAACGTCTTTAAGCACTTGTCCTAGAAGTGCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAATGAAAAACAACGTCTTTAAGCACTTGTCCTAGAAGTGCTTCA  500

seq1  AAGGGGCTGCACATTGGGATTGAGAATAATACACAGTTAAAAGCATGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTGCACATTGGGATTGAGAATAATACACAGTTAAAAGCATGTCC  550

seq1  TGCTCTTCCAAGAGACCCTAGTTCTATTCCCAATATCTACATCATGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCAAGAGACCCTAGTTCTATTCCCAATATCTACATCATGCAGC  600

seq1  TCACAACCACCTCGATCTTCAGGAAACTCAATCTCTCTTCTGGCCTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCACCTCGATCTTCAGGAAACTCAATCTCTCTTCTGGCCTGCAA  650

seq1  GTGCACAAACATACACAACACAACACAACATATCACACACCATTCCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAAACATACACAACACAACACAACATATCACACACCATTCCTAGA  700

seq1  AAAAAATTCCACTATATTGCCAAACACACCTGGAGCAATGGTGGGCAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCCACTATATTGCCAAACACACCTGGAGCAATGGTGGGCAGGG  750

seq1  TTACATTAGAAACATCTACTGCAAACCACTCCAGAAGGAATCCCCTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAGAAACATCTACTGCAAACCACTCCAGAAGGAATCCCCTTCCT  800

seq1  GACTTGGAAGAGTCAGAAGAAAACTGGAATGTCAGAGAGTTTCTGCTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGAAGAGTCAGAAGAAAACTGGAATGTCAGAGAGTTTCTGCTGGA  850

seq1  GCTAAAGGATTCTCTTTGGGTACCACAGTAAGTGCCAATCAGACGGGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGGATTCTCTTTGGGTACCACAGTAAGTGCCAATCAGACGGGAAT  900

seq1  GAATGTCAAACCCATCATAAATCTGCATGAAAAAAAAAGCACAATACAAC  950
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  GAATGTCAAACCCATCATAAATCTGCATGAAAAAAAAAGCAC-ATAC-AC  948

seq1  ATCATCATTAGGCAACTACACACACTTTCTTCATGAGAAGCAAAATTTAA  1000
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  ATCATCATTAGGC-ACTACACACACTTTCTTCATGAG-AGCAAAATTTAA  996

seq1  AGAATGGTTTGTATTTTATGATTTTACCAAAGTAGAAAGAATATCAGGAA  1050
      ||||||| ||||| ||||||| ||||||||||||||||||||||||||||
seq2  AGAATGG-TTGTA-TTTATGA-TTTACCAAAGTAGAAAGAATATCAGGAA  1043

seq1  AATTCTTTTTGTTTAAAACAAAAAGTTACGTTTGAACATATTATTATAAC  1100
      |    | |||||||||||||||||| ||||||||||||||||||||||||
seq2  A----TCTTTGTTTAAAACAAAAAG-TACGTTTGAACATATTATTATAAC  1088

seq1  TATTTTAAGGTGTTTCATATAGCTTTGTTGTGGGATTATTCTAATGAACA  1150
      |||||  ||| |||||||| ||| ||||| ||||||  ||   ||| |||
seq2  TATTT--AGG-GTTTCATA-AGC-TTGTT-TGGGATATTT---ATG-ACA  1128

seq1  TCAGTGTAGACTATATAGCTGACT  1174
      ||| ||||||||||||||||||||
seq2  TCA-TGTAGACTATATAGCTGACT  1151

seq1: chr2_13303407_13304512
seq2: B6Ng01-078C07.g_68_1160 (reverse)

seq1  TCAAGGTCAAAGTCAGTAATGTTCAAAAGAACACGGTGATATTTCTCAAC  50
            |||| |||||| || ||||||  ||||||   ||||||||||||
seq2  ------TCAAGGTCAGTTATTTTCAAAGAAACACGTGAATATTTCTCAAC  44

seq1  TTGAATGATCCAAGAGCACTCC-GTGTTAGCTCTGTAGTTGTTGGGGTAA  99
      ||| |||||||||||||||||| ||||||||||||||| |||| ||||||
seq2  TTG-ATGATCCAAGAGCACTCCGGTGTTAGCTCTGTAG-TGTT-GGGTAA  91

seq1  TTTGGAGAATGAATTTCTCCTCTGGAAACCTGGAAAATCCCACCGCAACC  149
      |||||||||||||||||| |||| |||||||||||||||||| ||||| |
seq2  TTTGGAGAATGAATTTCT-CTCT-GAAACCTGGAAAATCCCA-CGCAA-C  137

seq1  TGCAAGTAGGAGACAGAGTTCAGCCACTCGAGATATCCCTGTTATATAAA  199
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCAAGTAGGAGACAGAGTTCAGCCACTCGAGATAT-CCTGTTATATAAA  186

seq1  AATGTAAGCAGTCTGGTGCCAAGCACAGGCAGATAATACCCTACTCGGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGCAGTCTGGTGCCAAGCACAGGCAGATAATACCCTACTCGGTT  236

seq1  TAGCTATTGTATTGGTTCTATGCTAAAGCCATCAAAGAACTAATCATATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTGTATTGGTTCTATGCTAAAGCCATCAAAGAACTAATCATATT  286

seq1  AAATCATTTATCCCAACATAAATAAGGGAACATGGGTAATACTAGCATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTATCCCAACATAAATAAGGGAACATGGGTAATACTAGCATAA  336

seq1  TACATTAAATACTATAAATATTGGTGCCAAAAGTTAATTAAAATAATAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAATACTATAAATATTGGTGCCAAAAGTTAATTAAAATAATAAT  386

seq1  GTAGGGTATAATTCAGCTGGTAGAGCGCTTGTCTAACATGCACTTGAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTATAATTCAGCTGGTAGAGCGCTTGTCTAACATGCACTTGAACC  436

seq1  TAGTTTCAAACTCCAGCACTGAATACACTGTGCATAGCCATGCATCCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCAAACTCCAGCACTGAATACACTGTGCATAGCCATGCATCCCAT  486

seq1  AATCCTACCCAGAGGTGGAGAAGAGGGATCAGAAGTTCAAAGTTATCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTACCCAGAGGTGGAGAAGAGGGATCAGAAGTTCAAAGTTATCTGT  536

seq1  TAATACATGGAAAGTCTGCAGTCATCATGATCTATATATGACCCTGTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATGGAAAGTCTGCAGTCATCATGATCTATATATGACCCTGTCTC  586

seq1  AAAATAATAAAAACAGCAGGAAACCTAAATACAGGTGAATTCATTTTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAAAAACAGCAGGAAACCTAAATACAGGTGAATTCATTTTTTC  636

seq1  ATGGGTTCTTTCAAACCTATGCTCTAAGAATCATCCTTGCCTTTGAAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCTTTCAAACCTATGCTCTAAGAATCATCCTTGCCTTTGAAATG  686

seq1  TTTCCTAGTCCAATAGCTTATGATGTTATAAATTACTTAATGTCTGGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGTCCAATAGCTTATGATGTTATAAATTACTTAATGTCTGGCTC  736

seq1  TGCAATTGTTAATATTCTAGGTAGACCTCATTCCATAAGTTGTATTTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGTTAATATTCTAGGTAGACCTCATTCCATAAGTTGTATTTAAT  786

seq1  TCTTACAATGTTACCAAGTATCTGTCAGCGCTCCTTGGATTTATGATCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAATGTTACCAAGTATCTGTCAGCGCTCCTTGGATTTATGATCAT  836

seq1  ACAAACAACTGATAGAAAATTTCAGCAATGTTTTTGGGCAGAGGGATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAACTGATAGAAAATTTCAGCAATGTTTTTGGGCAGAGGGATTAA  886

seq1  CCTGAATGCTATACAAATAAATTAATATGTAATTCACTCTAGAGAGATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGCTATACAAATAAATTAATATGTAATTCACTCTAGAGAGATTT  936

seq1  CACATAGCTCCATACTCTCTTGGCATTAAGGAAGTGACTTAAGGTGGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCTCCATACTCTCTTGGCATTAAGGAAGTGACTTAAGGTGGCCT  986

seq1  CATGTCACATCTCTGTCCTAGGAAACAGCTATGGGACCTTGGACAAGTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCACATCTCTGTCCTAGGAAACAGCTATGGGACCTTGGACAAGTCA  1036

seq1  ACGAGTCCTCTAAGTTTCCTGTCTGTGCTTATAAGATGAGGATATACAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTCCTCTAAGTTTCCTGTCTGTGCTTATAAGATGAGGATATACAAG  1086

seq1  AGAATTC  1106
      |||||||
seq2  AGAATTC  1093