BAC Information

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BAC

Clone NameB6Ng01-078D23
Chromosome2 (Build37)
Map Location 53,990,694 - 53,991,865
singlet/doubletsinglet
Overlap genenone
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933, Rprm
Downstream geneLOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078D23.bB6Ng01-078D23.g
ACCDH893995DH893996
length1,1701,178
definitionDH893995|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D23, 5' end.DH893996|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaggacaaggaatcaaagaccagtttatttgaatctggatcac
caaacctcattcctactctttctttacagtgatttctacaaaatctctaa
atcgtttctacaatctaaataatttttatgaaacaaaacaaaacgaggct
gattctgcatacattggaatccttattaacaatatatgtatttaccttgt
cagaaaaaaattagctctgtggaaattttgcatcattattcctggttaat
taatatataaaatgttgaattataaatgcacatgtgggcataaacacata
aatacacacacatataatttgtgcccatatacatgagatagattattaaa
accttgcatatagattcctaaaaggagtataattttatcatcactgaagt
ctccttcaatctttcattcttgaactccatctgcaacaggaatgttaatg
gtcggtttatggacaaggttaatttatcttcagtggcacaaaagtaacat
aaagttgtagatcagcagtaactccgtaaaatgccacctggttacagagt
gttttgacacagtacagcctcatgtgtgccacatttgagactaaaagtgt
atcttgtcagttgtttgattaggaaatgtctatgtagcatgtcagtctgg
gcctggaaaactggaacttcacaagaatgaaaatgtgtaagataatggtg
gcacaatatgcattgaaagaagttaatgtattacccaagcgactaatagt
gcagacattcttgaaaccaagcattcttcttcatccatcttctacgtgat
tattttacaatgggaaccacttgctattcgcctccattccattaagcaac
caaattacatgccaagctagctttataaatagaaccctgagtaggtgggc
catggccaaagggacacagggaatcaattatttatctaatctcatctttt
agaatgaatttgtctcttctacttaaatatatatatataaactgtcaggc
ctatggagacatacgaagaaaggtcatatcattccaattacttaggaaaa
caccgatactttatattttatgaatataataagaaataaatctagaccat
acatgatgaaaatccattatagcctattgaagccatagaattcacctgat
ttatggacaaggacattttg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttctacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctggcgcggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacataatactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaagaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatataatttcctaaacacatgaaactcaag
aaaaacgaagactgaaatgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaaagctgacaccattgcatacacttgcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgcccgggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagaagaacgtagccagagctaaagggatctgcaacccta
tagtggaacacattatgactacagtaccccggagctcttgactctagctg
catatgtatcaaagaatggcctagtcgcatcactgaagaagaaggcccat
tggaaccgctaactttatatgtccagtacagggaatgcaagggcaaaagg
gggaaagtggggtgggttaggggtatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_53990694_53991865
seq2: B6Ng01-078D23.b_44_1213 (reverse)

seq1  CAAAATAGTCTTGTCAATAAATCA-GTG-ATTCTATTGCCTCAATA-GCT  47
      ||||||   |||||| |||||||| ||| ||||||| || |||||| |||
seq2  CAAAATGTCCTTGTCCATAAATCAGGTGAATTCTATGGCTTCAATAGGCT  50

seq1  ATAATGGAATTTTCATCATGTATGGTCTAGATTTATGTCTTATTATATTC  97
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  ATAATGG-ATTTTCATCATGTATGGTCTAGATTTATTTCTTATTATATTC  99

seq1  ATAAAATATTAAAGTATC-GTGTTTTCCTAAGTAATTTTGAATGATTATG  146
      |||||||| ||||||||| |||||||||||||||| || |||||| ||||
seq2  ATAAAATA-TAAAGTATCGGTGTTTTCCTAAGTAA-TTGGAATGA-TATG  146

seq1  ACCTTTCTTCGTATTGTCTCCATAGCCCTGACAGTTTATATATATATATT  196
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  ACCTTTCTTCGTA-TGTCTCCATAGGCCTGACAGTTTATATATATATATT  195

seq1  TAAGTAGAAGAGACAAATTCATTTCTAAAAGATGAGATTAGATAAATAAA  246
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  TAAGTAGAAGAGACAAATTCA-TTCTAAAAGATGAGATTAGATAAAT-AA  243

seq1  TTGATTCCCTGTTGTCCC-TTGGCCATGGCCCACCTACTCAGGGTTCTAT  295
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  TTGATTCCCTG-TGTCCCTTTGGCCATGGCCCACCTACTCAGGGTTCTAT  292

seq1  TTATAAAGCTAGCTTGGCATGTAATTTGGTTGCTTAATGGAATGGAGGCG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGCTAGCTTGGCATGTAATTTGGTTGCTTAATGGAATGGAGGCG  342

seq1  AATAGCAAGTGGTT-CCATTGTAAAATAATCACGTAGAAGATGGATGAAG  394
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATAGCAAGTGGTTCCCATTGTAAAATAATCACGTAGAAGATGGATGAAG  392

seq1  AAGAATGCTTGGTTTCAAGAATGTCTGCACTATTAGTCGCTTGGGTAATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCTTGGTTTCAAGAATGTCTGCACTATTAGTCGCTTGGGTAATA  442

seq1  CATTAACTTCTTTCAATGCATATTGTGCCACCATTATCTTACACATTTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTTCTTTCAATGCATATTGTGCCACCATTATCTTACACATTTTC  492

seq1  ATTCTTGTGAAGTTCCAGTTTTCCAGGCCCAGACTGACATGCTACATAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTGAAGTTCCAGTTTTCCAGGCCCAGACTGACATGCTACATAGA  542

seq1  CATTTCCTAATCAAACAACTGACAAGATACACTTTTAGTCTCAAATGTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTAATCAAACAACTGACAAGATACACTTTTAGTCTCAAATGTGG  592

seq1  CACACATGAGGCTGTACTGTGTCAAAACACTCTGTAACCAGGTGGCATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGAGGCTGTACTGTGTCAAAACACTCTGTAACCAGGTGGCATTT  642

seq1  TACGGAGTTACTGCTGATCTACAACTTTATGTTACTTTTGTGCCACTGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGAGTTACTGCTGATCTACAACTTTATGTTACTTTTGTGCCACTGAA  692

seq1  GATAAATTAACCTTGTCCATAAACCGACCATTAACATTCCTGTTGCAGAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTAACCTTGTCCATAAACCGACCATTAACATTCCTGTTGCAGAT  742

seq1  GGAGTTCAAGAATGAAAGATTGAAGGAGACTTCAGTGATGATAAAATTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCAAGAATGAAAGATTGAAGGAGACTTCAGTGATGATAAAATTAT  792

seq1  ACTCCTTTTAGGAATCTATATGCAAGGTTTTAATAATCTATCTCATGTAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTTAGGAATCTATATGCAAGGTTTTAATAATCTATCTCATGTAT  842

seq1  ATGGGCACAAATTATATGTGTGTGTATTTATGTGTTTATGCCCACATGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCACAAATTATATGTGTGTGTATTTATGTGTTTATGCCCACATGTG  892

seq1  CATTTATAATTCAACATTTTATATATTAATTAACCAGGAATAATGATGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAATTCAACATTTTATATATTAATTAACCAGGAATAATGATGCA  942

seq1  AAATTTCCACAGAGCTAATTTTTTTCTGACAAGGTAAATACATATATTGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCACAGAGCTAATTTTTTTCTGACAAGGTAAATACATATATTGT  992

seq1  TAATAAGGATTCCAATGTATGCAGAATCAGCCTCGTTTTGTTTTGTTTCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGATTCCAATGTATGCAGAATCAGCCTCGTTTTGTTTTGTTTCA  1042

seq1  TAAAAATTATTTAGATTGTAGAAACGATTTAGAGATTTTGTAGAAATCAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTATTTAGATTGTAGAAACGATTTAGAGATTTTGTAGAAATCAC  1092

seq1  TGTAAAGAAAGAGTAGGAATGAGGTTTGGTGATCCAGATTCAAATAAACT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGAAAGAGTAGGAATGAGGTTTGGTGATCCAGATTCAAATAAACT  1142

seq1  GGTCTTTGATTCCTTGTCCTAAGAATTC  1172
      ||||||||||||||||||||||||||||
seq2  GGTCTTTGATTCCTTGTCCTAAGAATTC  1170