BAC Information

Click to search

BAC

Clone NameB6Ng01-078E03
Chromosome1 (Build37)2 (Build37)
Map Location 174,664,681 - 174,665,22563,835,123 - 63,835,657
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
Downstream geneLOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078E03.bB6Ng01-078E03.g
ACCDH894003DH894004
length1,011530
definitionDH894003|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E03, 5' end.DH894004|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(174,664,681 - 174,665,225)(63,835,123 - 63,835,657)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggactaaaacctacttggtcaggattgatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctccctttttcatttttgattttgttaa
tttaggattttgtccctgtgcccttttagtgagttctagctaagggttta
tctatcttgttgattttctcaaagaaccaactcctcgtttggttaattct
ttgaatagttcttcttgtttcacttggttgatttcacccctgagtttgat
tatttcctgccgtctactcctctgggttgaatttgcttcctttttttcta
gggcttttagatgtgtgtcaagctgctagtatgtgctgtctcccgtttct
tcttggaggtactcgagctatgagtttccctcttaaaaatgctttcatgt
ggtccataggt
ctactattggccttatgattcctgttcgctattcagtttgaccaggtaga
aattcctgtgtttaaaataaagctagcagcaaatattttcccatacatat
ctgcatgagacagtcaagcaaacagtcaatcacaaatgcaatctgagaat
ccaatctctttcagttaggttttacatcatctcaggcttagatccaccct
gctccctctccatcctggcatgtttgctagtgaacatcttgtctccttaa
aaatttcatgtagcctgtcaattgtgaaaaaatagaaaacagagacaaca
ttgaaaacctcaaaattatactctgaagaaacaacgttctggagtctctg
caacatgaacgcttatattgttattagaaaaaaagtagtgttagggccag
ccagatggatcagcccctaagggaactttctactaagtatgggaatctga
gttccttccccaagccctacatggtaccaagcagggaaccaactcaaaaa
tgttgtctcctttcacttttatgttgctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174664681_174665225
seq2: B6Ng01-078E03.b_512_1056 (reverse)

seq1  ACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCGCTG  50
      ||||||||  ||| |||||||||||| ||||||||||||||||||| | |
seq2  ACCTATGGACCAC-ATGAAAGCATTTTTAAGAGGGAAACTCATAGCTC-G  48

seq1  AGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGACAAC  100
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTACCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGAC-AC  97

seq1  ACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTA  150
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  ACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCAACCCAGAGGAGTA  147

seq1  GACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGT-GAAACA  196

seq1  AGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAA  246

seq1  AATCAACAAGATAGATAAACCCTTAGCTAG-ACTCACT-AAAGGGCACAG  298
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  AATCAACAAGATAGATAAACCCTTAGCTAGAACTCACTAAAAGGGCACAG  296

seq1  GGACAAAATCCT-AATTAACAAAATCAGAAATG-AAAAGGGAGACATAAC  346
      |||||||||||| |||||||||||||| ||||| ||||||||||||||||
seq2  GGACAAAATCCTAAATTAACAAAATCAAAAATGAAAAAGGGAGACATAAC  346

seq1  AACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGC  396

seq1  TATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGAC  446

seq1  AGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAG  496

seq1  TCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACC  545
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACC  545

seq1: chr2_63835123_63835657
seq2: B6Ng01-078E03.g_68_603

seq1  GAATTCCTACTATTGGCCTTATGATTCCTGTTCGCTATTCAGTTTGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTATTGGCCTTATGATTCCTGTTCGCTATTCAGTTTGACCA  50

seq1  GGTAGAAATTCCTGTGTTTAAAATAAAGCTAGCAGCAAATATTTTCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAATTCCTGTGTTTAAAATAAAGCTAGCAGCAAATATTTTCCCAT  100

seq1  ACATATCTGCATGAGACAGTCAAGCAAACAGTCAATCACAAATGCAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTGCATGAGACAGTCAAGCAAACAGTCAATCACAAATGCAATCT  150

seq1  GAGAATCCAATCTCTTTCAGTTAGGTTTTACATCATCTCAGGCTTAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCAATCTCTTTCAGTTAGGTTTTACATCATCTCAGGCTTAGATC  200

seq1  CACCCTGCTCCCTCTCCATCCTGGCATGTTTGCTAGTGAACATCTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCTCCCTCTCCATCCTGGCATGTTTGCTAGTGAACATCTTGTCT  250

seq1  CCTTAAAAATTTCATGTAGCCTGTCAATTGTGAAAAAATAGAAAACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAAATTTCATGTAGCCTGTCAATTGTGAAAAAATAGAAAACAGAG  300

seq1  ACAACATTGAAAACCTCAAAATTATACTCTGAAGAAACAACGTTCTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTGAAAACCTCAAAATTATACTCTGAAGAAACAACGTTCTGGAG  350

seq1  TCTCTGCAACATGAACGCTTATATTGTTATTAGAAAAAAAGTAGTGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAACATGAACGCTTATATTGTTATTAGAAAAAAAGTAGTGTTAG  400

seq1  GGCCAGCCAGATGGATCAGCCCCTAAGGGAACTTTCTACTAAGTATGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCAGATGGATCAGCCCCTAAGGGAACTTTCTACTAAGTATGGGA  450

seq1  ATCTGAGTTCCTTCCCCAAGCCCTACATGGTACCAAGCAGGGAACCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTGAGTTCCTTCCCCAAGCCCTACATGGTACCAAGCAGGGAACCAACT  500

seq1  CAAAAATGTTGTCACC-TTCACATTCATGTTGCTGC  535
      ||||||||||||| || ||||| || ||||||||||
seq2  CAAAAATGTTGTCTCCTTTCACTTTTATGTTGCTGC  536