BAC Information

Click to search

BAC

Clone NameB6Ng01-078F23
Chromosome2 (Build37)
Map Location 154,225,477 - 154,358,222
singlet/doubletdoublet
Overlap geneSnta1, Cbfa2t2
Upstream geneAsxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1
Downstream geneApba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078F23.bB6Ng01-078F23.g
ACCDH894088DH894089
length1,1501,148
definitionDH894088|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F23, 5' end.DH894089|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,225,477 - 154,226,639)(154,357,075 - 154,358,222)
sequence
gaattcactggtgacacctgttcttccaggacattctcagaattctatac
cccccaagctgcctggccaagttcacatccaaatgacagacctgccttcc
aggtcaccttaggagtaggttagggctggggaagttcagaacaacgtgac
cagtggtttggctctcaggaaacctagactccagcaagctcctaagagtc
ctggttactacttgggaacattgaatgtctaacccaaacaaacttttcaa
agtctcaagggacaagcacaacccatcatcctcctgtcctgtaagctgtt
aaatcactcctgtagtgcaggcttttgagcccagttcctcacccggcacc
cctccctccatattggcctgttgtgctgccttgaagagaactcccctttc
caggaggcagctggcctagagaccaggtcaaaaagacttcaaggctgaga
atatagcttagtggtagaaaggcacctcatatgtatgacccttaagttcg
gctccaggtctctcaccaccacatcaacactaacgggatctaaagagagg
gagggagagagaatgagaattcaagtaaaaaaaaatgtaaagcagaacat
agtaattaagatatataatcctgccgggcagtggtagcacacctttagtc
ccagcacttgggaggcagaggcaagcggatttctgagttcgaggccagcc
tggtctacagagtgagttccaggacagccaaggctacacagagaaaccct
gtctcgaaaaaccaaaccaaacaaacaaatccaggcatgatggtattata
gcctgtaacctccacatttcaagagatgaaggcacgaaaattaggagttc
aaagtcagcctgggctactagaaactacaccaaataaccaaacataaaat
gaaaggagtgggagatgtctcaagtatctttttgtagtattcttttgttt
ttttgaaacagagtctcactatgtaggccttggcttatctggaactatat
atacctggctttcatcaactatagagatctactgctctttctctgagtgc
tgagagtaagaatgtgtgtgcaattacacctgccatcattatcctttaat
agagtgactgcggctgcggtggtgttgcacacctttattccagtacttgg

gaattcttcccccaaacagaaaaataaataaatgtttaaaaaaaaaaaaa
aaaaaaaaaaaaaaagaagttacaagccaggagttgtggtgtacatcttt
gatcaatctcagtacttgggaagcagaaagttctacgctggaggccagcc
taatctacatagcaagttccagaacagtcagggatacacaaagaccctgt
cttaaataaataacacaacaacttggaaattttttgttgaattcaaatat
attagtgctagggcttaatgcacgttccctgcagttccagctcctctaga
ggcagctttatcaacttagtctcaaaataaaaacaacaaaaggctgggat
cacacttgccaaatacacccaaggccctaaatgtaatcatctgtactgtg
accagggagggtggcaggatgtaactggtactgtcacattgtttctgccc
ttacatccttttttcatctttatgacctacctgccttctcctacgtgtac
caggcacaaatgaactctaaattctgtcttaatctcctaagtggtataat
tatcatatctggtctaatttttcgtatttgtttttattctatcaaagcat
cctgggccctgggtaaggtattgggagtctaccttatctgcctgcccagt
ttgtaatttagaaccaacatttacctaatgagattactgtgaggaccaga
agaagcatgcatgcacagccaggtgtccatccacctgcacacagtgagcc
tactacatctctatagctgggtatcttcatctgtatgtactgaatctgct
ctaggactgctagtcattatcacacaatgggacacatttcacttcatgga
agctaaaatagtgtgtgtgtgtttggtagactgttatgaatacaaaagaa
tagtttattattttagtattaatcgtcaagtaagaaaaaagtctcttggt
aatggctaaaaatcccaccatctaattcagggagtggaacttctttcttc
ccagcatttagttgcaagcagcgggcttgctttcctttagccacccaggc
cagcttatagcccagtgtagctctgacctcttgggactctttcttgctca
ttgatgaccaggaaagctcttcttgcagctgcgtttgcttcgctatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154225477_154226639
seq2: B6Ng01-078F23.b_42_1191

seq1  GAATTCACTGGTGACACCTGTTCTTCCAGGACATTCTCAGAATTCTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTGACACCTGTTCTTCCAGGACATTCTCAGAATTCTATAC  50

seq1  CCCCCAAGCTGCCTGGCCAAGTTCACATCCAAATGACAGACCTGCCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGCTGCCTGGCCAAGTTCACATCCAAATGACAGACCTGCCTTCC  100

seq1  AGGTCACCTTAGGAGTAGGTTAGGGCTGGGGAAGTTCAGAACAACGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCTTAGGAGTAGGTTAGGGCTGGGGAAGTTCAGAACAACGTGAC  150

seq1  CAGTGGTTTGGCTCTCAGGAAACCTAGACTCCAGCAAGCTCCTAAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTTGGCTCTCAGGAAACCTAGACTCCAGCAAGCTCCTAAGAGTC  200

seq1  CTGGTTACTACTTGGGAACATTGAATGTCTAACCCAAACAAACTTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTACTACTTGGGAACATTGAATGTCTAACCCAAACAAACTTTTCAA  250

seq1  AGTCTCAAGGGACAAGCACAACCCATCATCCTCCTGTCCTGTAAGCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAGGGACAAGCACAACCCATCATCCTCCTGTCCTGTAAGCTGTT  300

seq1  AAATCACTCCTGTAGTGCAGGCTTTTGAGCCCAGTTCCTCACCCGGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTCCTGTAGTGCAGGCTTTTGAGCCCAGTTCCTCACCCGGCACC  350

seq1  CCTCCCTCCATATTGGCCTGTTGTGCTGCCTTGAAGAGAACTCCCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCATATTGGCCTGTTGTGCTGCCTTGAAGAGAACTCCCCTTTC  400

seq1  CAGGAGGCAGCTGGCCTAGAGACCAGGTCAAAAAGACTTCAAGGCTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCAGCTGGCCTAGAGACCAGGTCAAAAAGACTTCAAGGCTGAGA  450

seq1  ATATAGCTTAGTGGTAGAAAGGCACCTCATATGTATGACCCTTAAGTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTTAGTGGTAGAAAGGCACCTCATATGTATGACCCTTAAGTTCG  500

seq1  GCTCCAGGTCTCTCACCACCACATCAACACTAACGGGATCTAAAGAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGTCTCTCACCACCACATCAACACTAACGGGATCTAAAGAGAGG  550

seq1  GAGGGAGAGAGAATGAGAATTCAAGTAAAAAAAAATGTAAAGCAGAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGAGAATGAGAATTCAAGTAAAAAAAAATGTAAAGCAGAACAT  600

seq1  AGTAATTAAGATATATAATCCTGCCGGGCAGTGGTAGCACACCTTTAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTAAGATATATAATCCTGCCGGGCAGTGGTAGCACACCTTTAGTC  650

seq1  CCAGCACTTGGGAGGCAGAGGCAAGCGGATTTCTGAGTTCGAGGCCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGAGGCAGAGGCAAGCGGATTTCTGAGTTCGAGGCCAGCC  700

seq1  TGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCT  750

seq1  GTCTCGAAAAACCAAACCAAACAAACAAATCCAGGCATGATGGTATTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAAAAACCAAACCAAACAAACAAATCCAGGCATGATGGTATTATA  800

seq1  GCCTGTAACCTCCACA-TTCAAGAGATGAAGGCACGAAAATTAGGAGTTC  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCCTGTAACCTCCACATTTCAAGAGATGAAGGCACGAAAATTAGGAGTTC  850

seq1  AAAGTCAGCCTGGGCTACTAGAAACTACACCAAATAACCAAAACATAAAA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAGTCAGCCTGGGCTACTAGAAACTACACCAAATAACC-AAACATAAAA  899

seq1  TG-AAGGAGTGGGAGATGTCTCAAGTATCTTTTTTGTTAGTATTCTTTTG  948
      || |||||||||||||||||||||||||||||||   |||||||||||||
seq2  TGAAAGGAGTGGGAGATGTCTCAAGTATCTTTTT--GTAGTATTCTTTTG  947

seq1  TTTTTTTGAAACAGAGTCTCACTATGTAGGCCTTGGCTTATCTGGAACTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAAACAGAGTCTCACTATGTAGGCCTTGGCTTATCTGGAACTA  997

seq1  TATATACCTGGCTTTCCATCAAACTTATAGAGATCTACCTGCCTCTATCT  1048
      ||||||||||||||| ||||||   |||||||||||| ||| |||| |||
seq2  TATATACCTGGCTTT-CATCAA--CTATAGAGATCTA-CTG-CTCTTTCT  1042

seq1  CTGAGTGCTGAGAGTAAAGATGTGTGTGCCATTACACCTGGCATCATTAT  1098
      |||||||||||||||||  |||||||||| |||||||||| |||||||| 
seq2  CTGAGTGCTGAGAGTAAGAATGTGTGTGCAATTACACCTGCCATCATTA-  1091

seq1  TCTTTTAATAAGAAGTGACTGCCGGCTGGGCGGTGGTGTTGCACACCTTT  1148
      || |||||||   |||||||| |||||  |||||||||||||||||||||
seq2  TCCTTTAATA--GAGTGACTG-CGGCT--GCGGTGGTGTTGCACACCTTT  1136

seq1  AATCCCAGTACTTGG  1163
       || |||||||||||
seq2  -ATTCCAGTACTTGG  1150

seq1: chr2_154357075_154358222
seq2: B6Ng01-078F23.g_70_1217 (reverse)

seq1  CCATAGCGGATGTCAAACGGCAGGCTGC-AGAAGATGCTTTCCTGGTCAT  49
      |||||||| |   ||||| ||| ||||| |||||| ||||||||||||||
seq2  CCATAGCGAA--GCAAAC-GCA-GCTGCAAGAAGA-GCTTTCCTGGTCAT  45

seq1  CAATGAGCAAG-AAGAGTCCACAGAGGTCAGAGCTACACTGGGCTATAGG  98
      ||||||||||| ||||||||  |||||||||||||||||||||||||| |
seq2  CAATGAGCAAGAAAGAGTCCCAAGAGGTCAGAGCTACACTGGGCTATAAG  95

seq1  CTGGGCTGGGTGGCTAAAGGGAAGCAAGCCCGCTGCTTGCCACTGAAATG  148
      |||| ||||||||||||||| ||||||||||||||||||| ||| |||||
seq2  CTGGCCTGGGTGGCTAAAGGAAAGCAAGCCCGCTGCTTGCAACT-AAATG  144

seq1  CTGGGTAGAAAGA--GTCCACT-CCTGAATTAGATGGTGGGATTTTTAGC  195
      ||||| |||||||   |||||| |||||||||||||||||||||||||||
seq2  CTGGGAAGAAAGAAGTTCCACTCCCTGAATTAGATGGTGGGATTTTTAGC  194

seq1  CATTACCAAGAGACTTTTTTCTTACTTGACGA-TAATACTAAAATAATAA  244
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATTACCAAGAGACTTTTTTCTTACTTGACGATTAATACTAAAATAATAA  244

seq1  ACTATTCTTTTGTATTCATAACAGTCTACCACACACACACACACTATTTT  294
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTATTCTTTTGTATTCATAACAGTCTACCAAACACACACACACTATTTT  294

seq1  AGCTTCCATGAAGTGAAATGTGTCCCATTGTGTGATAATGACTAGCAGTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCATGAAGTGAAATGTGTCCCATTGTGTGATAATGACTAGCAGTC  344

seq1  CTAGAGCAGATTCAGTACATACAGATGAAGATACCCAGCTATAGAGATGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCAGATTCAGTACATACAGATGAAGATACCCAGCTATAGAGATGT  394

seq1  AGTAGGCTCACTGTGTGCAGGTGGATGGACACCTGGCTGTGCATGCATGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTCACTGTGTGCAGGTGGATGGACACCTGGCTGTGCATGCATGC  444

seq1  TTCTTCTGGTCCTCACAGTAATCTCATTAGGTAAATGTTGGTTCTAAATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGGTCCTCACAGTAATCTCATTAGGTAAATGTTGGTTCTAAATT  494

seq1  ACAAACTGGGCAGGCAGATAAGGTAGACTCCCAATACCTTACCCAGGGCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGGGCAGGCAGATAAGGTAGACTCCCAATACCTTACCCAGGGCC  544

seq1  CAGGATGCTTTGATAGAATAAAAACAAATACGAAAAATTAGACCAGATAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCTTTGATAGAATAAAAACAAATACGAAAAATTAGACCAGATAT  594

seq1  GATAATTATACCACTTAGGAGATTAAGACAGAATTTAGAGTTCATTTGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTATACCACTTAGGAGATTAAGACAGAATTTAGAGTTCATTTGTG  644

seq1  CCTGGTACACGTAGGAGAAGGCAGGTAGGTCATAAAGATGAAAAAAGGAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTACACGTAGGAGAAGGCAGGTAGGTCATAAAGATGAAAAAAGGAT  694

seq1  GTAAGGGCAGAAACAATGTGACAGTACCAGTTACATCCTGCCACCCTCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGCAGAAACAATGTGACAGTACCAGTTACATCCTGCCACCCTCCC  744

seq1  TGGTCACAGTACAGATGATTACATTTAGGGCCTTGGGTGTATTTGGCAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAGTACAGATGATTACATTTAGGGCCTTGGGTGTATTTGGCAAG  794

seq1  TGTGATCCCAGCCTTTTGTTGTTTTTATTTTGAGACTAAGTTGATAAAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCCAGCCTTTTGTTGTTTTTATTTTGAGACTAAGTTGATAAAGC  844

seq1  TGCCTCTAGAGGAGCTGGAACTGCAGGGAACGTGCATTAAGCCCTAGCAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTAGAGGAGCTGGAACTGCAGGGAACGTGCATTAAGCCCTAGCAC  894

seq1  TAATATATTTGAATTCAACAAAAAATTTCCAAGTTGTTGTGTTATTTATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTTGAATTCAACAAAAAATTTCCAAGTTGTTGTGTTATTTATT  944

seq1  TAAGACAGGGTCTTTGTGTATCCCTGACTGTTCTGGAACTTGCTATGTAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGGGTCTTTGTGTATCCCTGACTGTTCTGGAACTTGCTATGTAG  994

seq1  ATTAGGCTGGCCTCCAGCGTAGAACTTTCTGCTTCCCAAGTACTGAGATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCTGGCCTCCAGCGTAGAACTTTCTGCTTCCCAAGTACTGAGATT  1044

seq1  GATCAAAGATGTACACCACAACTCCTGGCTTGTAACTTCTTTTTTTTTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGATGTACACCACAACTCCTGGCTTGTAACTTCTTTTTTTTTTT  1094

seq1  TTTTTTTTTTTTTTTTTAAACATTTATTTATTTTTCTGTTTGGGGGAAGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTAAACATTTATTTATTTTTCTGTTTGGGGGAAGA  1144

seq1  ATTC  1148
      ||||
seq2  ATTC  1148