BAC Information

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BAC

Clone NameB6Ng01-078H21
Chromosome2 (Build37)
Map Location 43,851,321 - 44,011,767
singlet/doubletdoublet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078H21.bB6Ng01-078H21.g
ACCDH894175DH894176
length1,0991,222
definitionDH894175|Mus musculus domesticus DNA, BAC clone: B6Ng01-078H21, 5' end.DH894176|Mus musculus domesticus DNA, BAC clone: B6Ng01-078H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,010,640 - 44,011,767)(43,851,321 - 43,852,654)
sequence
gaattccaacctgttttctacatttacaacaaattttagtaaaggttctt
gggcggaaaaccaaatgagtttttattaaatcactggccagagaatcaaa
acaaaggactgacctttcttcaaccaacttcagagcaaagcactctacaa
gcagaactccttggaaggaggagagttctaagcttgggaacatcatatgc
tttaaaagtatctgtgtgactccctctttcctctttgacttatcaaaaca
acaaactttcctttatggtgcttaaaatattataaaaggagacaagacta
tttcttttttaaaaaaaatgactgaaacctttaaaaacatctgtactcaa
ggtaataatgccgtctgcaccttctgtagacatgttattctttaggttgg
tttgccagaagaatattaaaggtcagttaaggacacaagggaacatcaca
gagtcaagaatccatccatcatagcgaaagaagaaaggtgccaaatgcac
tcttctatcttagggtcccctcttctgctcttgagataagtttcactcac
ccatgcttagttatctgctcatggtttcagggatttttaaactctgccac
ctaccagtgttcattctgaaatcttgttcttaaaactgaactgaagtttt
gttactcaaccagtgagaaatatttctctcatcctcaccctgccgagaag
gaccaggatgctgcaggattgtgtcccaccaaggccagttttcattctag
gtgccagatatatactgctggacaaagactttgaaaataaaggtggctat
ttataagctaatatttctgtgtggcctctgatgacatttgctaagtagaa
acagtgtgactgttttccttttcgttcttttttgtctttctttggtaaat
ggagtatgtgagaattgatttaaactaagaatttaaataactcttttact
gactcgctatgaaaaaaatgctgattatcctagacttaaatgtagtatct
gttaaatattaaattcacatattagcttgtagaaaaggagaaattatgca
tgtctttaaatatctgtggtgcctcttccagtttccttatgcttaaaac
gaattctctgcaggagaagaaacaacccagcagctgtcaatcacacactt
gcttctgattatggatagaaactttcttcccacttcccattctccaggct
gggatttttttctagtgtgaaattgtacaggttttgttcatggaaagaga
tatgttgtatgctaaagtaaagcactgaaattttttaaaggtcaagtcaa
tgtttgttaaatttgggttggtggtttctgcataaaaatacaaatttctc
tatctagaagttgacagaatcattcaaactgtactttaagcacacatgca
cattgtcctcatgattttgaactgtccattgtttttattttgtactttta
gatagatagacagacagacagataggtagatagatagataaaaacgtgta
acacactgcttgaatatatatgcattatatatctctatctctatacatat
acctatccctatcacctatacctatacctctatctattgatcaatagatc
aatcaatcgatctatacatagatatcaaaccacacagaaatttgatagag
ataatagcattatgactcagtgcccaagtgcttgcacacacacaggctct
agactcagtcctcagaagtacgaaacaatgtaacctgacaacaacaaaaa
gttactggattttgaagctagaacttcttgtagcaaaatctttggggtat
tgaagagttcttggatagtacctttttcccagaatactttgtattagtta
tcttttccctgaatactggacacaatctacttacattaaaaaaaaaaaaa
agtttcattagctcagagtattggaagttcacaggtgtagcatcttcatc
cagtcagattcagtgggatacatatcagtggtatcttatgataaattatg
ataaaactgtgtgagatgcaagaatctcatcttacaccagaagtcaagaa
aactggctgtacttcctcgtacacctcctatgataaagaacaccctcaag
cctctaatgtaaaagctattcactttcccaaatgatgatcaacctgtggc
acagactggtgacacatactgaggacaagagcttaaaggaattgatgtgt
ctgttgactgatgccttgcaggcgagctgttacctctatgaagtcaggga
cgagaaagaatctggctgaatgcccttctcaattccttggaactcattga
tacatggtcctgaccaccaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44010640_44011767
seq2: B6Ng01-078H21.b_44_1142 (reverse)

seq1  GTTTATAAGCAATAAGGAGAAACTCTGAAAGAGGCA-CACAGATTAATAT  49
      |||| ||||| ||||||| |    ||| |||||||| |||||||  || |
seq2  GTTT-TAAGC-ATAAGGAAA----CTGGAAGAGGCACCACAGAT--AT-T  41

seq1  AAAAGACATTGGCCATAATTTTCTCCTGTTTCTACAGGCCTAAATATGTT  99
       ||||||||    ||||| |||||||| |||||||| ||   |||||| |
seq2  TAAAGACAT---GCATAA-TTTCTCCT-TTTCTACAAGC--TAATATG-T  83

seq1  GAATTTAAATATTTAACAGATACTACATTTAAAGTCTAAGGATAAATCAG  149
      |||||| ||||||||||||||||||||||| |||||| ||||| ||||||
seq2  GAATTT-AATATTTAACAGATACTACATTT-AAGTCT-AGGAT-AATCAG  129

seq1  CATTTTTTTTCATAGCGAGGTCAGTAAAAGAGTTATTTAAATTCCTTAGT  199
      || ||||||||||||||| |||||||||||||||||||||||| ||||| 
seq2  CA-TTTTTTTCATAGCGA-GTCAGTAAAAGAGTTATTTAAATT-CTTAG-  175

seq1  TTTAAATCAATTCTCACATACTCCATTTACCAAAAAAAAAAAAAAAAAAA  249
      |||||||||||||||||||||||||||||||      ||| ||| | |||
seq2  TTTAAATCAATTCTCACATACTCCATTTACC------AAAGAAAGACAAA  219

seq1  AAAGAACGAAAAGGAAAACAGTCACACTGTTTCTACTTAGCAAATGTCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACGAAAAGGAAAACAGTCACACTGTTTCTACTTAGCAAATGTCAT  269

seq1  CAGAGGCCACACAGAAATATTAGCTTATAAATAGCCACC-TTATTTTCAA  348
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGAGGCCACACAGAAATATTAGCTTATAAATAGCCACCTTTATTTTCAA  319

seq1  AGTCTTTGTCCAGCAGTATATATCTGGCACCTAGAATGAAAACTGGCCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGTCCAGCAGTATATATCTGGCACCTAGAATGAAAACTGGCCTT  369

seq1  GGTGGGACACAATCCTGCAGCATCCTGGTCCTTCTCGGCAGGGTGAGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACACAATCCTGCAGCATCCTGGTCCTTCTCGGCAGGGTGAGGAT  419

seq1  GAGAGAAATATTTCTCACTGGTTGAGTAACAAAACTTCAGTTCAGTTTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATATTTCTCACTGGTTGAGTAACAAAACTTCAGTTCAGTTTTA  469

seq1  AGAACAAGATTTCAGAATGAACACTGGTAGGTGGCAGAGTTTAAAAATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGATTTCAGAATGAACACTGGTAGGTGGCAGAGTTTAAAAATCC  519

seq1  CTGAAACCATGAGCAGATAACTAAGCATGGGTGAGTGAAACTTATCTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCATGAGCAGATAACTAAGCATGGGTGAGTGAAACTTATCTCAA  569

seq1  GAGCAGAAGAGGGGACCCTAAGATAGAAGAGTGCATTTGGCACCTTTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAGAGGGGACCCTAAGATAGAAGAGTGCATTTGGCACCTTTCTT  619

seq1  CTTTCGCTATGATGGATGGATTCTTGACTCTGTGATGTTCCCTTGTGTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGCTATGATGGATGGATTCTTGACTCTGTGATGTTCCCTTGTGTCC  669

seq1  TTAACTGACCTTTAATATTCTTCTGGCAAACCAACCTAAAGAATAACATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGACCTTTAATATTCTTCTGGCAAACCAACCTAAAGAATAACATG  719

seq1  TCTACAGAAGGTGCAGACGGCATTATTACCTTGAGTACAGATGTTTTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAAGGTGCAGACGGCATTATTACCTTGAGTACAGATGTTTTTAA  769

seq1  AGGTTTCAGTCATTTTTTTTAAAAAAGAAATAGTCTTGTCTCCTTTTATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCAGTCATTTTTTTTAAAAAAGAAATAGTCTTGTCTCCTTTTATA  819

seq1  ATATTTTAAGCACCATAAAGGAAAGTTTGTTGTTTTGATAAGTCAAAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAGCACCATAAAGGAAAGTTTGTTGTTTTGATAAGTCAAAGAG  869

seq1  GAAAGAGGGAGTCACACAGATACTTTTAAAGCATATGATGTTCCCAAGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGGAGTCACACAGATACTTTTAAAGCATATGATGTTCCCAAGCT  919

seq1  TAGAACTCTCCTCCTTCCAAGGAGTTCTGCTTGTAGAGTGCTTTGCTCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCTCCTCCTTCCAAGGAGTTCTGCTTGTAGAGTGCTTTGCTCTG  969

seq1  AAGTTGGTTGAAGAAAGGTCAGTCCTTTGTTTTGATTCTCTGGCCAGTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGTTGAAGAAAGGTCAGTCCTTTGTTTTGATTCTCTGGCCAGTGA  1019

seq1  TTTAATAAAAACTCATTTGGTTTTCCGCCCAAGAACCTTTACTAAAATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAAACTCATTTGGTTTTCCGCCCAAGAACCTTTACTAAAATTT  1069

seq1  GTTGTAAATGTAGAAAACAGGTTGGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  GTTGTAAATGTAGAAAACAGGTTGGAATTC  1099

seq1: chr2_43851321_43852654
seq2: B6Ng01-078H21.g_70_1291

seq1  GAATTCTCTGCAGGAGAAGAAACAACCCAGCAGCTGTCAATCACACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAGGAGAAGAAACAACCCAGCAGCTGTCAATCACACACTT  50

seq1  GCTTCTGATTATGGATAGAAACTTTCTTCCCACTTCCCATTCTCCAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGATTATGGATAGAAACTTTCTTCCCACTTCCCATTCTCCAGGCT  100

seq1  GGGATTTTTTTCTAGTGTGAAATTGTACAGGTTTTGTTCATGGAAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTTTCTAGTGTGAAATTGTACAGGTTTTGTTCATGGAAAGAGA  150

seq1  TATGTTGTATGCTAAAGTAAAGCACTGAAATTTTTTAAAGGTCAAGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTATGCTAAAGTAAAGCACTGAAATTTTTTAAAGGTCAAGTCAA  200

seq1  TGTTTGTTAAATTTGGGTTGGTGGTTTCTGCATAAAAATACAAATTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTAAATTTGGGTTGGTGGTTTCTGCATAAAAATACAAATTTCTC  250

seq1  TATCTAGAAGTTGACAGAATCATTCAAACTGTACTTTAAGCACACATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAAGTTGACAGAATCATTCAAACTGTACTTTAAGCACACATGCA  300

seq1  CATTGTCCTCATGATTTTGAACTGTCCATTGTTTTTATTTTGTACTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCTCATGATTTTGAACTGTCCATTGTTTTTATTTTGTACTTTTA  350

seq1  GATAGATAGACAGACAGACAGATAGGTAGATAGATAGATAAAAACGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGACAGACAGACAGATAGGTAGATAGATAGATAAAAACGTGTA  400

seq1  ACACACTGCTTGAATATATATGCATTATATATCTCTATCTCTATACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGCTTGAATATATATGCATTATATATCTCTATCTCTATACATAT  450

seq1  ACCTATCCCTATCACCTATACCTATACCTCTATCTATTGATCAATAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCCCTATCACCTATACCTATACCTCTATCTATTGATCAATAGATC  500

seq1  AATCAATCGATCTATACATAGATATCAAACCACACAGAAATTTGATAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCGATCTATACATAGATATCAAACCACACAGAAATTTGATAGAG  550

seq1  ATAATAGCATTATGACTCAGTGCCCAAGTGCTTGCACACACACAGGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCATTATGACTCAGTGCCCAAGTGCTTGCACACACACAGGCTCT  600

seq1  AGACTCAGTCCTCAGAAGTACGAAACAATGTAACCTGACAACAACAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGTCCTCAGAAGTACGAAACAATGTAACCTGACAACAACAAAAA  650

seq1  GTTACTGGATTTTGAAGCTAGAACTTCTTGTAGCAAAATCTTTGGGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGGATTTTGAAGCTAGAACTTCTTGTAGCAAAATCTTTGGGGTAT  700

seq1  TGAAGAGTTCTTGGATAGTACCTTTTTCCCAGAATACTTTGTATTAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTTCTTGGATAGTACCTTTTTCCCAGAATACTTTGTATTAGTTA  750

seq1  TCTTTTCCCTGAATACTGGACACAATCTACTTACATT-AAAAAAAAAAAA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTTTTCCCTGAATACTGGACACAATCTACTTACATTAAAAAAAAAAAAA  800

seq1  AGTTTCATTAGCTCAGAGTATTGGAAGTTCACAGGTGTAGCATCTTCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATTAGCTCAGAGTATTGGAAGTTCACAGGTGTAGCATCTTCATC  850

seq1  CAGTCAGATTCAGTGGGATACATATCAGTGGTATCTTATGATAAATTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGATTCAGTGGGATACATATCAGTGGTATCTTATGATAAATTATG  900

seq1  ATAAAACTGTGTGAGATGCAAGAATCTCATCTTACACCAGAAGTCAAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGTGTGAGATGCAAGAATCTCATCTTACACCAGAAGTCAAGAA  950

seq1  AACTGGCTGTACTTCCCCGTACACCTCCTATGATTAAAGAACCACCCTCA  999
      |||||||||||||||| |||||||||||||||| ||||||| ||||||||
seq2  AACTGGCTGTACTTCCTCGTACACCTCCTATGA-TAAAGAA-CACCCTCA  998

seq1  AGCCTCTAATGTAAAAGGCTATTCACTTCCCAAAATGATGATCAACCTGT  1049
      |||||||||||||||| ||||||||||| || ||||||||||||||||||
seq2  AGCCTCTAATGTAAAA-GCTATTCACTTTCCCAAATGATGATCAACCTGT  1047

seq1  GGCCACAGACT-GTGACACATACTTGAGGACAAGAGCTT-AAGGAATGGA  1097
      || |||||||| ||||||||||| ||||||||||||||| ||||||| | 
seq2  GG-CACAGACTGGTGACACATAC-TGAGGACAAGAGCTTAAAGGAATTG-  1094

seq1  ATGTGTCTGTTGACTGATGGCTTGCAGGGCAGAGCTGTTCACCTCATGGA  1147
      ||||||||||||||||||| ||||||||   |||||||| |||||   ||
seq2  ATGTGTCTGTTGACTGATGCCTTGCAGG--CGAGCTGTT-ACCTCTATGA  1141

seq1  GGCCAGGGAGCAGAGAAAGAAAATGCCTGCCCTAGATGCCTTTCTTCATT  1197
       | ||||||   |||||||||  || |||      ||||| ||||  |||
seq2  AGTCAGGGA--CGAGAAAGAATCTGGCTG-----AATGCCCTTCTCAATT  1184

seq1  TTCCCCTTGAACTCCATTGGATACATGGTCCTGACCA-CATTCTGAGTTG  1246
         || | ||||| |||| |||||||||||||||||| || ||       
seq2  ---CCTTGGAACT-CATT-GATACATGGTCCTGACCACCAATC-------  1222

seq1  GTTTTCACTCTAGGGAACTCTCATTGACAGCATCCTATTAGCTACATGGG  1296
                                                        
seq2  --------------------------------------------------  1222

seq1  AAGCCTAGCTTTACTAACCTCCCAAGCACATCTCAATC  1334
                                            
seq2  --------------------------------------  1222