BAC Information

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BAC

Clone NameB6Ng01-078K15
Chromosome2 (Build37)
Map Location 88,428,104 - 88,560,181
singlet/doubletdoublet
Overlap geneOlfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196
Upstream geneOlfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528
Downstream geneOlfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078K15.bB6Ng01-078K15.g
ACCDH894300DH894301
length1,1751,200
definitionDH894300|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K15, 5' end.DH894301|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,558,989 - 88,560,181)(88,428,104 - 88,429,322)
sequence
gaattcattttatattgcctaaattcaaacagattctgaaaattaggtac
attgtagcctctggaatatttttgaacagctcaaagggaaattttaggga
gtaatgctgttctcaaggtcaatgtcttataccattatgtgttaacatat
tccctatggagggcagaaatacatttttttcttctagcatcctatgggaa
agctgctatcaaaaagtatgtgcaattgagactcacttagccagtcctca
aacaggtgaaaagtatgtttacatttgtgaattcagagatgcattattag
agatttggtgaattatatatattttaatatggccttatgtactgtgtgaa
tatatttttagaatactttactaatacttgaaaagaagtattaaaattaa
aaactataattttaaaggtttactgttattataaatatgaaatactatca
ttggaaaaaaggaaattttctaaaatcagtgaattccttataagcaatga
ttatgagaaaggcattagttttgttttagaagaaatgatgcatttgatat
attacagtttatgattatttgaagaggtattaaactatacacacatttcc
ccaatgttatcatgtaaagttgctaaatgagattaggctgagctatccat
gtgcacccaaaacttaaaagattttatgtcgaactaaaattagtagaaat
gagtaatagagaataataactttgacaaatcttctggaatgtgtcagctt
tttgatgaacaagaacaatatttgagctgactagtgtatattatagtata
ggttgagtattttttttaaatgcttctaaaatgatgttacaaagctttta
cttacaattgacatgaacttggaatttacttttaaaatgtggcaactact
ttctagataatgttcaggtcaacaatggcactaatggtgcttaaagtata
tgtaatgacattgatgaaaaaatacattcacaggggtggtgctgatatct
tcctagtaatatttcccaaaaacttcggtgacattttatctacctttagc
cctcccagtgtatctgatttctgtctactagagtagaatgaatgataaat
gtaattttgaacactggaagaactaggaaagattgcgaccttacaaaatt
ggaataggtggattctgcttctctg
gaattctcagagcacttcattaataaacatacaattctgtagaagcacaa
tatgttcagatacaattatgtttcaatttttaaaaatttaagatagatct
aatgtctattgtaagtatttacatttggttaatttactgtattttgtata
tgggaagattgaagacaatgttaaaacttatatacttttctgttttaaca
tccagaatactgtgttttataaaattggtttgatataagatataatacac
atttatcatattctacccccatatttattattttcgctttctccctattg
ttgttatttctatccatttctccagacaggttaacttctatatttacctc
atttacacatacacaatcttatgagtcttcatgagctctacattgcacgt
gggctttttgcagaattatatgttcagtagtcagtaagtaacctcataaa
agatctaacaatgctcactctgctttatgactttgctcactgcaaaatgc
atgctgtggtgtgtttctgcagttaggggactctatggctctgaaataat
ggcaaaaggaaagaagagaagagagattagtttgactcttattgaggaca
gtttgactgccagactacattgtttgagatgtgtgttagaaatagagaga
taattttgactgatttccagatctgaagaaaaaaaaatggggggtcattt
tatattgttccatagacatgtttcctattttaaactattttagttttgtg
attgcttataggaattcttacctggaagctgtaatactagatacagttaa
gatcaaaatatcttacgtattgatggagaagtcctatatgtgtcctcttt
gaggccagccttccactattttattacaataattttgagatgcataaatc
cacagtgtaccatatacaagagaagtggtaaaattcatttattctggttc
ccaaagatgtattcactctacattttagtactcttgaattttaaagacct
tgattagtgataggagaagttgtggtagtatgcatttttcatttacaaag
aactctctgccacactctagtttaaaattatatggagagtaaaagattta
ttttgattcaataatacatgacttatttttgtcctagcagaaaaatttat
acgtactagacctttccaattaccatttggctgccgtgaaagtttttttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_88558989_88560181
seq2: B6Ng01-078K15.b_41_1215 (reverse)

seq1  CAGAGAAGCAGAAATTCAAACTATTCAATATTTGTAAGGTCTGCTATCTT  50
      |||||||||||||  || | |||||| |  ||||||||||| || ||| |
seq2  CAGAGAAGCAGAA--TCCACCTATTCCAATTTTGTAAGGTC-GCAATC-T  46

seq1  TTCCTAGTCTTCTCAATTGTTCAAAAATTACTATTTAATCATTCATTCTA  100
      |||||||| |  || | ||||| |||||||| |||| |||||||||||| 
seq2  TTCCTAGT-TCTTCCAGTGTTC-AAAATTAC-ATTT-ATCATTCATTCT-  91

seq1  ACTCTTAGTAGACAGAAATCAGATACACTGTGAAGGGCTTAAAGGTAGAT  150
      |||| ||||||||||||||||||||||||| | ||||| |||||||||||
seq2  ACTC-TAGTAGACAGAAATCAGATACACTG-GGAGGGC-TAAAGGTAGAT  138

seq1  AAAATGTCACCGAAAGTTTGTGAGGAAATAATTACTTAGGAAGATATCAG  200
      |||||||||||| |||||| || |||||| ||||| ||||||||||||||
seq2  AAAATGTCACCG-AAGTTTTTG-GGAAAT-ATTAC-TAGGAAGATATCAG  184

seq1  CACCACCCCTGTGAATGTTATTTTTTCATCAATGTCATTACATATACTTT  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACCACCCCTGTGAATG-TATTTTTTCATCAATGTCATTACATATACTTT  233

seq1  AAGCACCATTAGTGCCATTGTTGACCTGAACATTATCTAGAAAGTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGCACCATTAGTGCCATTGTTGACCTGAACATTATCTAGAAAGTAG-TT  282

seq1  GCCACATTTTAAAAGTAAATTCCAAGTTCATGTCAATTGTAAGTAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATTTTAAAAGTAAATTCCAAGTTCATGTCAATTGTAAGTAAAAGC  332

seq1  TTTGTAACATCATTTTAGAAGCATTTAAAAAAAATACTCAACCTATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACATCATTTTAGAAGCATTTAAAAAAAATACTCAACCTATACTA  382

seq1  TAATATACACTAGTCAGCTCAAATATTGTTCTTGTTCATCAAAAAGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACACTAGTCAGCTCAAATATTGTTCTTGTTCATCAAAAAGCTGA  432

seq1  CACATTCCAGAAGATTTGTCAAAGTTATTATTCTCTATTACTCATTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCCAGAAGATTTGTCAAAGTTATTATTCTCTATTACTCATTTCTA  482

seq1  CTAATTTTAGTTCGACATAAAATCTTTTAAGTTTTGGGTGCACATGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTAGTTCGACATAAAATCTTTTAAGTTTTGGGTGCACATGGATA  532

seq1  GCTCAGCCTAATCTCATTTAGCAACTTTACATGATAACATTGGGGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCTAATCTCATTTAGCAACTTTACATGATAACATTGGGGAAATG  582

seq1  TGTGTATAGTTTAATACCTCTTCAAATAATCATAAACTGTAATATATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATAGTTTAATACCTCTTCAAATAATCATAAACTGTAATATATCAA  632

seq1  ATGCATCATTTCTTCTAAAACAAAACTAATGCCTTTCTCATAATCATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCATTTCTTCTAAAACAAAACTAATGCCTTTCTCATAATCATTGC  682

seq1  TTATAAGGAATTCACTGATTTTAGAAAATTTCCTTTTTTCCAATGATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGGAATTCACTGATTTTAGAAAATTTCCTTTTTTCCAATGATAGT  732

seq1  ATTTCATATTTATAATAACAGTAAACCTTTAAAATTATAGTTTTTAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATATTTATAATAACAGTAAACCTTTAAAATTATAGTTTTTAATTT  782

seq1  TAATACTTCTTTTCAAGTATTAGTAAAGTATTCTAAAAATATATTCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTCTTTTCAAGTATTAGTAAAGTATTCTAAAAATATATTCACAC  832

seq1  AGTACATAAGGCCATATTAAAATATATATAATTCACCAAATCTCTAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATAAGGCCATATTAAAATATATATAATTCACCAAATCTCTAATAA  882

seq1  TGCATCTCTGAATTCACAAATGTAAACATACTTTTCACCTGTTTGAGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCTGAATTCACAAATGTAAACATACTTTTCACCTGTTTGAGGAC  932

seq1  TGGCTAAGTGAGTCTCAATTGCACATACTTTTTGATAGCAGCTTTCCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAGTGAGTCTCAATTGCACATACTTTTTGATAGCAGCTTTCCCAT  982

seq1  AGGATGCTAGAAGAAAAAAATGTATTTCTGCCCTCCATAGGGAATATGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTAGAAGAAAAAAATGTATTTCTGCCCTCCATAGGGAATATGTT  1032

seq1  AACACATAATGGTATAAGACATTGACCTTGAGAACAGCATTACTCCCTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAATGGTATAAGACATTGACCTTGAGAACAGCATTACTCCCTAA  1082

seq1  AATTTCCCTTTGAGCTGTTCAAAAATATTCCAGAGGCTACAATGTACCTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCTTTGAGCTGTTCAAAAATATTCCAGAGGCTACAATGTACCTA  1132

seq1  ATTTTCAGAATCTGTTTGAATTTAGGCAATATAAAATGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGAATCTGTTTGAATTTAGGCAATATAAAATGAATTC  1175

seq1: chr2_88428104_88429322
seq2: B6Ng01-078K15.g_70_1269

seq1  GAATTCTCAGAGCACTTCATTAATAAACATACAATTCTGTAGAAGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGCACTTCATTAATAAACATACAATTCTGTAGAAGCACAA  50

seq1  TATGTTCAGATACAATTATGTTTCAATTTTTAAAAATTTAAGATAGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGATACAATTATGTTTCAATTTTTAAAAATTTAAGATAGATCT  100

seq1  AATGTCTATTGTAAGTATTTACATTTGGTTAATTTACTGTATTTTGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTATTGTAAGTATTTACATTTGGTTAATTTACTGTATTTTGTATA  150

seq1  TGGGAAGATTGAAGACAATGTTAAAACTTATATACTTTTCTGTTTTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGATTGAAGACAATGTTAAAACTTATATACTTTTCTGTTTTAACA  200

seq1  TCCAGAATACTGTGTTTTATAAAATTGGTTTGATATAAGATATAATACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATACTGTGTTTTATAAAATTGGTTTGATATAAGATATAATACAC  250

seq1  ATTTATCATATTCTACCCCCATATTTATTATTTTCGCTTTCTCCCTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCATATTCTACCCCCATATTTATTATTTTCGCTTTCTCCCTATTG  300

seq1  TTGTTATTTCTATCCATTTCTCCAGACAGGTTAACTTCTATATTTACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTCTATCCATTTCTCCAGACAGGTTAACTTCTATATTTACCTC  350

seq1  ATTTACACATACACAATCTTATGAGTCTTCATGAGCTCTACATTGCACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACATACACAATCTTATGAGTCTTCATGAGCTCTACATTGCACGT  400

seq1  GGGCTTTTTGCAGAATTATATGTTCAGTAGTCAGTAAGTAACCTCATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTTGCAGAATTATATGTTCAGTAGTCAGTAAGTAACCTCATAAA  450

seq1  AGATCTAACAATGCTCACTCTGCTTTATGACTTTGCTCACTGCAAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAACAATGCTCACTCTGCTTTATGACTTTGCTCACTGCAAAATGC  500

seq1  ATGCTGTGGTGTGTTTCTGCAGTTAGGGGACTCTATGGCTCTGAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGGTGTGTTTCTGCAGTTAGGGGACTCTATGGCTCTGAAATAAT  550

seq1  GGCAAAAGGAAAGAAGAGAAGAGAGATTAGTTTGACTCTTATTGAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGGAAAGAAGAGAAGAGAGATTAGTTTGACTCTTATTGAGGACA  600

seq1  GTTTGACTGCCAGACTACATTGTTTGAGATGTGTGTTAGAAATAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACTGCCAGACTACATTGTTTGAGATGTGTGTTAGAAATAGAGAGA  650

seq1  TAATTTTGACTGATTTCCAGATCTGAAGAAAAAAAAATGGGGGGTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGACTGATTTCCAGATCTGAAGAAAAAAAAATGGGGGGTCATTT  700

seq1  TATATTGTTCCATAGACATGTTTCCTATTTTAAACTATTTTAGTTTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTTCCATAGACATGTTTCCTATTTTAAACTATTTTAGTTTTGTG  750

seq1  ATTGCTTATAGGAATTCTTACCTGGAAGCTGTAATACTAGATACAGTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTATAGGAATTCTTACCTGGAAGCTGTAATACTAGATACAGTTAA  800

seq1  GATCAAAATATCTTACGTATTGATGGAGAAGTCCTATATGTGTCCTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAATATCTTACGTATTGATGGAGAAGTCCTATATGTGTCCTCTTT  850

seq1  GAGGCCCAGCCTTCCACTATTTTATTACAATAATTTTGAGATGCATAAAT  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGG-CCAGCCTTCCACTATTTTATTACAATAATTTTGAGATGCATAAAT  899

seq1  CCACAGTGTACCATATACAAGGAGAAGTGGTAAAATTCATTTATTCTGGT  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCACAGTGTACCATATACAA-GAGAAGTGGTAAAATTCATTTATTCTGGT  948

seq1  TCCCAAAGATGTATTCACTCTACATTTTTAGTACTCTTGAATTTTAAAGA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCCAAAGATGTATTCACTCTACA-TTTTAGTACTCTTGAATTTTAAAGA  997

seq1  CCTTGATTTAGTGATAGGAGAAGTTGGTGTTAGTATGCATTTTACATTTA  1050
      |||||| |||||||||||||||||| ||| ||||||||||||| ||||||
seq2  CCTTGA-TTAGTGATAGGAGAAGTT-GTGGTAGTATGCATTTTTCATTTA  1045

seq1  CAAAGAACTCTCTGCCAACACTCTAGTTTAAATATTAATATGGAGAGTAA  1100
      |||||||||||||||| ||||||||||||||| ||| |||||||||||||
seq2  CAAAGAACTCTCTGCC-ACACTCTAGTTTAAA-ATT-ATATGGAGAGTAA  1092

seq1  AAAGAATGTATTTGAATCAAATAATACATGACTTATATTTATGTCCTAGC  1150
      ||   || |||||  ||  ||||||||||||||  ||||| |||||||||
seq2  AA--GATTTATTTTGATTCAATAATACATGACT--TATTTTTGTCCTAGC  1138

seq1  AAAGAAAATTTTAATACTTACTAAGACTTTTTCAAATTATACATTTGGCT  1200
        |||||| ||| |||| |||| ||||  |||| |||||  |||||||||
seq2  --AGAAAAATTT-ATACGTACT-AGAC-CTTTCCAATTA-CCATTTGGCT  1182

seq1  GCTGTAGAAAGTTTTTTTT  1219
      || || |||||||||||||
seq2  GCCGT-GAAAGTTTTTTTT  1200