BAC Information

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BAC

Clone NameB6Ng01-079D02
Chromosome2 (Build37)
Map Location 100,658,376 - 100,659,515
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079D02.bB6Ng01-079D02.g
ACCDH894677DH894678
length1,1061,164
definitionDH894677|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D02, 5' end.DH894678|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgaaaataaactcattttaaatattctatcatagattgtttag
tctgccagcagattgatgaaatcatgctattcattcaaatttaggaagca
atatatagattattctttttaaaattataaaataatacaaaatttaattt
tgaggcattgttaaagatccatcagtgggaaacctgtttaaatgcctaga
ctgcaagagctctcaagtttacaaactgtgacacccctgatctgtgctgt
aaaagagctcctgggaaacatcttcaaatgcaatttactatgggaaccac
tgggaaagccaattcagtaaaggaggagcattctttttttcgtatgtttc
cttactatcaagacattcaaataggctctgtgtttattcctgccaacttc
tattattaaatataagcagtaaatcaataataaacgagctaatgacagga
agcttaattactgctcaagtctacaattcaatttaaaagttcagatgaaa
atcctgatttcggtaagtaaccagatgctactgagaactataacacagta
tgatacaggacagtatcaagagcgtaaaatctgataaacatttagtaatg
gaaactagatcctgaatagttaggaataacagggaatgagaatagatttg
cacctctttgaagaaggtgtgttgttttatgtttgttgggattcctccta
cggttccacatcctccatttccttcctctcaggcaagatgtccagacttc
tcagctcaccaggctggcagaatgaaacagagtccagaatgggtgtggtc
tgcaggatcctggtctggctgagattgaatgctgaggtggagaagagctt
ctctgaggtttttattgaaaccgttctcttagacagtcttagcttgtgtg
taaacttttattcagtaggcttgtatgcatacccattattcagatgacca
gagctgtaatgactttggaaagtgggagcgtttcaggtagatgtaaatca
ctgctagagtcaaagtacacaatgctcatctgtatagtgagattcagatc
cagtactttctaagcgatcttgggggtgggggagagaagtgactgtatgt
tgctaa
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
ttaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtatatataatggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagggagaattttattgaggatttttgc
atcgatattcataagagaaattggtttgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattgtggcttcataaaacgagttg
ggtagagtaccttctacctttattttgtgaaatagtttgtgcagaactgg
aattagatcttttttgaaggtcttatagaactctgcactaagcccgcctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggtgatatgtgactgttaagatcgttaacttgatcctgatttaactt
tggtacctggtatctgtccagaaatttgtccatttcatccaggttttcca
gttttgttgagtataaacttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttttgattttgttaat
taggattttgtccctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccctctactcctcttgggtgaattttcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtgtgtgctctctccagttccttc
ttgaggcactcagagctctgagtttccttcttagaatgctttcggctgtg
agatggctcatttggtagagcactgactgctcttctgagtcagagttcaa
atcccagcacattgttgctccaacattgggaatggaatctgaactcctct
ctggggtgttctgaagaagctcacgatggttacctacgttaaaaaataat
taataatctatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100658376_100659515
seq2: B6Ng01-079D02.b_45_1150

seq1  GAATTCTTGAAAATAAACTCATTTTAAATATTCTATCATAGATTGTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAAATAAACTCATTTTAAATATTCTATCATAGATTGTTTAG  50

seq1  TCTGCCAGCAGATTGATGAAATCATGCTATTCATTCAAATTTAGGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGCAGATTGATGAAATCATGCTATTCATTCAAATTTAGGAAGCA  100

seq1  ATATATAGATTATTCTTTTTAAAATTATAAAATAATACAAAATTTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGATTATTCTTTTTAAAATTATAAAATAATACAAAATTTAATTT  150

seq1  TGAGGCATTGTTAAAGATCCATCAGTGGGAAACCTGTTTAAATGCCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATTGTTAAAGATCCATCAGTGGGAAACCTGTTTAAATGCCTAGA  200

seq1  CTGCAAGAGCTCTCAAGTTTACAAACTGTGACACCCCTGATCTGTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAGCTCTCAAGTTTACAAACTGTGACACCCCTGATCTGTGCTGT  250

seq1  AAAAGAGCTCCTGGGAAACATCTTCAAATGCAATTTACTATGGGAACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCTCCTGGGAAACATCTTCAAATGCAATTTACTATGGGAACCAC  300

seq1  TGGGAAAGCCAATTCAGTAAAGGAGGAGCATTCTTTTTTTCGTATGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGCCAATTCAGTAAAGGAGGAGCATTCTTTTTTTCGTATGTTTC  350

seq1  CTTACTATCAAGACATTCAAATAGGCTCTGTGTTTATTCCTGCCAACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTATCAAGACATTCAAATAGGCTCTGTGTTTATTCCTGCCAACTTC  400

seq1  TATTATTAAATATAAGCAGTAAATCAATAATAAACGAGCTAATGACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAAATATAAGCAGTAAATCAATAATAAACGAGCTAATGACAGGA  450

seq1  AGCTTAATTACTGCTCAAGTCTACAATTCAATTTAAAAGTTCAGATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAATTACTGCTCAAGTCTACAATTCAATTTAAAAGTTCAGATGAAA  500

seq1  ATCCTGATTTCGGTAAGTAACCAGATGCTACTGAGAACTATAACACAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGATTTCGGTAAGTAACCAGATGCTACTGAGAACTATAACACAGTA  550

seq1  TGATACAGGACAGTATCAAGAGCGTAAAATCTGATAAACATTTAGTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGGACAGTATCAAGAGCGTAAAATCTGATAAACATTTAGTAATG  600

seq1  GAAACTAGATCCTGAATAGTTAGGAATAACAGGGAATGAGAATAGATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGATCCTGAATAGTTAGGAATAACAGGGAATGAGAATAGATTTG  650

seq1  CACCTCTTTGAAGAAGGTGTGTTGTTTTATGTTTGTTGGGATTCCTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTTTGAAGAAGGTGTGTTGTTTTATGTTTGTTGGGATTCCTCCTA  700

seq1  CGGTTCCACATCCTCCATTTCCTTCCTCTCAGGCAAGATGTCCAGACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCCACATCCTCCATTTCCTTCCTCTCAGGCAAGATGTCCAGACTTC  750

seq1  TCAGCTCACCAGGCTGGCAGAATGAAACAGAGTCCAGAATGGGTGTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCACCAGGCTGGCAGAATGAAACAGAGTCCAGAATGGGTGTGGTC  800

seq1  TGCAGGATCCTGGTCTGGCTGAGATTGAATGCTGAGGTGGAGAAGAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATCCTGGTCTGGCTGAGATTGAATGCTGAGGTGGAGAAGAGCTT  850

seq1  CTCTGAGGTTTTTATTGAAACCGTTCTCTTAGACAGTCTTAGCTTGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGTTTTTATTGAAACCGTTCTCTTAGACAGTCTTAGCTTGTGTG  900

seq1  TAAACTTTTATTCAGGTAGGCTTGTATGCATACCCATTATTCAGGATGAA  950
      |||||||||||||| |||||||||||||||||||||||||||| |||| |
seq2  TAAACTTTTATTCA-GTAGGCTTGTATGCATACCCATTATTCA-GATG-A  947

seq1  CCAGAGCTGTAAATGAACTTTGGAAAGTGGGAAGGCGTTTTCAGGGTAGA  1000
      |||||||||| |||| ||||||||||||||||  ||| ||||| ||||||
seq2  CCAGAGCTGT-AATG-ACTTTGGAAAGTGGGA--GCG-TTTCA-GGTAGA  991

seq1  TGTAAAATCACTGGCTAGAGTTCAAAGTACCACAAATGCCTCATCTGTAT  1050
      ||| |||||||| ||||||| |||||||| ||| |||| |||||||||||
seq2  TGT-AAATCACT-GCTAGAG-TCAAAGTA-CAC-AATG-CTCATCTGTAT  1035

seq1  AGTGAGGTATTCCAGGAATCCCAGGTACTTTCTAGGCAGATTCTTATGGG  1100
      ||||||  ||| |||  ||||   |||||||||| || || ||||   ||
seq2  AGTGAG--ATT-CAG--ATCC--AGTACTTTCTAAGC-GA-TCTT---GG  1073

seq1  GGGTGGGGGGAAGAGAAAGTTGAACTTGTATGTTTGCTAA  1140
      |||||||||  ||||||   |||   |||||| |||||||
seq2  GGGTGGGGG--AGAGAA--GTGA--CTGTATG-TTGCTAA  1106