BAC Information

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BAC

Clone NameB6Ng01-079G10
Chromosome2 (Build37)
Map Location 35,011,444 - 35,169,096
singlet/doubletdoublet
Overlap geneRab14, Gsn
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371
Downstream geneStom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079G10.bB6Ng01-079G10.g
ACCDH894820DH894821
length1,0451,179
definitionDH894820|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G10, 5' end.DH894821|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,168,044 - 35,169,096)(35,011,444 - 35,012,646)
sequence
gaattctgaagagcttagtccaaaagtcatacttctgaggggtcctccct
ctgcactgctgcctggagtgtgacttggctggttgaaagctgtacggcag
ctctgaaaattgcacacatgggggaacttgtatacttaaggaggggacgc
tctgatctggctaccatgccttcaagacatcagaattgctggacaacttt
acacctatattctaactcgatgaatactcagttacctaaaacagctttgt
gccaactaaagatttcgctaaggaagccataatgtctccagcaccaagtg
ctgtgctcagcagtttgcatctttcacttgcatgcacaggccttcctggt
gtgtgtggaccagcccacaggaactctgtggataagttagggctgtctgt
ctcttatagtgatgcctgtggcatcaggcagagagcagatccaggctcag
gtgatgccaggatctgcttaaaggagatactgaaaagatgcaggcagctt
ttttgaatctgctctgtagcctgaagggttaggtaagaggaagccgaaag
tcattgttaaaacaggttttaggaatctagaaacttggcactcataacaa
aaattgtggatcttccctaaaagattctggggaagggccagcaagacagc
tccatgagtaaaggcacctgcctccaccctaacgacctgagttcaattcc
caggacacacagtggaaagagaaccaactcccccttgttgttctctgatc
tccccagatatgccacgacacccacacatacaggacaatttttttttaaa
gattctggggtaaggaactagaaaggtgaatcaaaggtgaggagaacttg
ttcttgcagaggaccccaggctctgtcccagcactctattacagggagct
caccagagatgaccattcagacacagcttatagtcactgaaatagcctga
atgccagtatgggacagtatttggggacccagtatagccccaaatgttca
gagcacgacatttgagacagaaacctcattctgcatcttgtgcta
gaattctcgaccgccataggaggttccatacttgccaccatttttagaat
ctttctctccagtctgtggagaaaacactgtgattcagtgtcagctgccc
gactctgttactgttcagcctcacacagtgcttggcctgaacctgtggtc
tccccacggaccactttgctctgcctctgcaccttcacatgccttcccca
agccctgtctgtctgtcctgcctttcaaaacaaaagtgacgatgggcagt
cagcggaggtggctcaggctttaagttaaagcacttgttgctttcgcaga
gggtgcaggttcaatttccagcacccacatagtggctcatacgcgtctat
aactccagtttcaggagatacagcctcttctgaactcttgggtaccaggc
actcagtggtgcacatgcagacatgcaagcaaaacatttatacacataaa
accttttaaaaacatgaaaggtaaggggtcccttttgaagtaggccttct
ttctcctcaggtatcttgtacagtgcagggttagtcaccattagcatagt
cctgctggagcagtgctgtgaccagccagagtcactgaggggaatagccg
gccctccatctgtgggcgcctgtgtttagcatggggtcagctagttcaca
tgcctctgttgtctgctcgggtacatgaaatgctgtcttctgtgctagtc
catgagttatggcagttccctagcttttgtcatttaatgtagaccagcct
gggcctcagtgtgatagggaggcctgtgaggcagcagagtgagagagacg
tgaccactgctgtctaggagtggacggctctcgtgagagccacactgagg
agactggaacttgcttcttgcttgtggggggataaagcttcttttcacgt
gcgtggacattttggggagaggacagagtggcaggcatagccacttctcc
cacggtagcagtataaatgatactcaggaattgggtacacttagtcagag
aaagcatccatgtgctgagttgattatgtttttttctgcagcagcccatt
tcagattattttgtcttgtagcctcgagttactgaatttgtgtcatgact
tttgcaaatttttatgactgtgatttccaacatagaaagtcagtccaaac
acaccaggtgtgagagtgcacatgctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35168044_35169096
seq2: B6Ng01-079G10.b_47_1091 (reverse)

seq1  TAGCACAAGATGCCAGAATGAGGTTTCTGTCTTCAAAATGTTCGTGCTCT  50
      |||||||||||| |||||||||||||||||||   ||||| |||||||||
seq2  TAGCACAAGATG-CAGAATGAGGTTTCTGTCT--CAAATG-TCGTGCTCT  46

seq1  GAACATTTGGGGCTATACCTGGGTCCCCAAATACTTGTCCCATACTGGCA  100
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  GAACATTTGGGGCTATA-CTGGGTCCCCAAATAC-TGTCCCATACTGGCA  94

seq1  TTCCAGGCTATTTCAGTTGACTATAAGCTGTGTCTGAATGGTCATCTCTG  150
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TT-CAGGCTATTTCAG-TGACTATAAGCTGTGTCTGAATGGTCATCTCTG  142

seq1  GTGAGCTCCCTGTAATAGAGTGCTGGGACAGAGCCTGGGGTCCTCTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCCCTGTAATAGAGTGCTGGGACAGAGCCTGGGGTCCTCTGCAA  192

seq1  GAACAAGTTCTCCTCACCTTTGATTCACCTTTCTAGTTCCTTACCCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTTCTCCTCACCTTTGATTCACCTTTCTAGTTCCTTACCCCAGA  242

seq1  ATCTTTAAAAAAAAATTGTCCTGTATGTGTGGGTGTCGTGGCATATCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAAAAAAAATTGTCCTGTATGTGTGGGTGTCGTGGCATATCTGG  292

seq1  GGAGATCAGAGAACAACAAGGGGGAGTTGGTTCTCTTTCCACTGTGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCAGAGAACAACAAGGGGGAGTTGGTTCTCTTTCCACTGTGTGTC  342

seq1  CTGGGAATTGAACTCAGGTCGTTAGGGTGGAGGCAGGTGCCTTTACTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATTGAACTCAGGTCGTTAGGGTGGAGGCAGGTGCCTTTACTCAT  392

seq1  GGAGCTGTCTTGCTGGCCCTTCCCCAGAATCTTTTAGGGAAGATCCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTCTTGCTGGCCCTTCCCCAGAATCTTTTAGGGAAGATCCACAA  442

seq1  TTTTTGTTATGAGTGCCAAGTTTCTAGATTCCTAAAACCTGTTTTAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTATGAGTGCCAAGTTTCTAGATTCCTAAAACCTGTTTTAACAA  492

seq1  TGACTTTCGGCTTCCTCTTACCTAACCCTTCAGGCTACAGAGCAGATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCGGCTTCCTCTTACCTAACCCTTCAGGCTACAGAGCAGATTCA  542

seq1  AAAAAGCTGCCTGCATCTTTTCAGTATCTCCTTTAAGCAGATCCTGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTGCCTGCATCTTTTCAGTATCTCCTTTAAGCAGATCCTGGCAT  592

seq1  CACCTGAGCCTGGATCTGCTCTCTGCCTGATGCCACAGGCATCACTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAGCCTGGATCTGCTCTCTGCCTGATGCCACAGGCATCACTATAA  642

seq1  GAGACAGACAGCCCTAACTTATCCACAGAGTTCCTGTGGGCTGGTCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGACAGCCCTAACTTATCCACAGAGTTCCTGTGGGCTGGTCCACA  692

seq1  CACACCAGGAAGGCCTGTGCATGCAAGTGAAAGATGCAAACTGCTGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGGAAGGCCTGTGCATGCAAGTGAAAGATGCAAACTGCTGAGCA  742

seq1  CAGCACTTGGTGCTGGAGACATTATGGCTTCCTTAGCGAAATCTTTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGGTGCTGGAGACATTATGGCTTCCTTAGCGAAATCTTTAGTT  792

seq1  GGCACAAAGCTGTTTTAGGTAACTGAGTATTCATCGAGTTAGAATATAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAAGCTGTTTTAGGTAACTGAGTATTCATCGAGTTAGAATATAGG  842

seq1  TGTAAAGTTGTCCAGCAATTCTGATGTCTTGAAGGCATGGTAGCCAGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTTGTCCAGCAATTCTGATGTCTTGAAGGCATGGTAGCCAGATC  892

seq1  AGAGCGTCCCCTCCTTAAGTATACAAGTTCCCCCATGTGTGCAATTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGTCCCCTCCTTAAGTATACAAGTTCCCCCATGTGTGCAATTTTCA  942

seq1  GAGCTGCCGTACAGCTTTCAACCAGCCAAGTCACACTCCAGGCAGCAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCCGTACAGCTTTCAACCAGCCAAGTCACACTCCAGGCAGCAGTG  992

seq1  CAGAGGGAGGACCCCTCAGAAGTATGACTTTTGGACTAAGCTCTTCAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAGGACCCCTCAGAAGTATGACTTTTGGACTAAGCTCTTCAGAA  1042

seq1  TTC  1053
      |||
seq2  TTC  1045

seq1: chr2_35011444_35012646
seq2: B6Ng01-079G10.g_68_1246

seq1  GAATTCTCGACCGCCATAGGAGGTTCCATACTTGCCACCATTTTTAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGACCGCCATAGGAGGTTCCATACTTGCCACCATTTTTAGAAT  50

seq1  CTTTCTCTCCAGTCTGTGGAGAAAACACTGTGATTCAGTGTCAGCTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCCAGTCTGTGGAGAAAACACTGTGATTCAGTGTCAGCTGCCC  100

seq1  GACTCTGTTACTGTTCAGCCTCACACAGTGCTTGGCCTGAACCTGTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTTACTGTTCAGCCTCACACAGTGCTTGGCCTGAACCTGTGGTC  150

seq1  TCCCCACGGACCACTTTGCTCTGCCTCTGCACCTTCACATGCCTTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACGGACCACTTTGCTCTGCCTCTGCACCTTCACATGCCTTCCCCA  200

seq1  AGCCCTGTCTGTCTGTCCTGCCTTTCAAAACAAAAGTGACGATGGGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTCTGTCTGTCCTGCCTTTCAAAACAAAAGTGACGATGGGCAGT  250

seq1  CAGCGGAGGTGGCTCAGGCTTTAAGTTAAAGCACTTGTTGCTTTCGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGAGGTGGCTCAGGCTTTAAGTTAAAGCACTTGTTGCTTTCGCAGA  300

seq1  GGGTGCAGGTTCAATTTCCAGCACCCACATAGTGGCTCATACGCGTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAGGTTCAATTTCCAGCACCCACATAGTGGCTCATACGCGTCTAT  350

seq1  AACTCCAGTTTCAGGAGATACAGCCTCTTCTGAACTCTTGGGTACCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGTTTCAGGAGATACAGCCTCTTCTGAACTCTTGGGTACCAGGC  400

seq1  ACTCAGTGGTGCACATGCAGACATGCAAGCAAAACATTTATACACATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGGTGCACATGCAGACATGCAAGCAAAACATTTATACACATAAA  450

seq1  ACCTTTTAAAAACATGAAAGGTAAGGGGTCCCTTTTGAAGTAGGCCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTAAAAACATGAAAGGTAAGGGGTCCCTTTTGAAGTAGGCCTTCT  500

seq1  TTCTCCTCAGGTATCTTGTACAGTGCAGGGTTAGTCACCATTAGCATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCAGGTATCTTGTACAGTGCAGGGTTAGTCACCATTAGCATAGT  550

seq1  CCTGCTGGAGCAGTGCTGTGACCAGCCAGAGTCACTGAGGGGAATAGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGAGCAGTGCTGTGACCAGCCAGAGTCACTGAGGGGAATAGCCG  600

seq1  GCCCTCCATCTGTGGGCGCCTGTGTTTAGCATGGGGTCAGCTAGTTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCATCTGTGGGCGCCTGTGTTTAGCATGGGGTCAGCTAGTTCACA  650

seq1  TGCCTCTGTTGTCTGCTCGGGTACATGAAATGCTGTCTTCTGTGCTAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGTTGTCTGCTCGGGTACATGAAATGCTGTCTTCTGTGCTAGTC  700

seq1  CATGAGTTATGGCAGTTCCCTAGCTTTTGTCATTTAATGTAGACCAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTATGGCAGTTCCCTAGCTTTTGTCATTTAATGTAGACCAGCCT  750

seq1  GGGCCTCAGTGTGATAGGGAGGCCTGTGAGGCAGGCAGAGTGAGAGAGAC  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGCCTCAGTGTGATAGGGAGGCCTGTGAGGCA-GCAGAGTGAGAGAGAC  799

seq1  GTGACCACTGCTGTCTAGGAGTGGACGGCTCTCGTGAGAGCCACACTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACTGCTGTCTAGGAGTGGACGGCTCTCGTGAGAGCCACACTGAG  849

seq1  GAGACTGGAACTTGCTTCTTGCTTGTGGGGGGATAAAGCTTCTTTTCACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGAACTTGCTTCTTGCTTGTGGGGGGATAAAGCTTCTTTTCACG  899

seq1  TGCGTGGACATTTTGGGAAGAGGACAGAGTGGGCAGGGCATAGGCCCACT  950
      ||||||||||||||||| |||||||||||| |||| |||||||  |||||
seq2  TGCGTGGACATTTTGGGGAGAGGACAGAGT-GGCA-GGCATAG--CCACT  945

seq1  TCTCCCACGGTAGCAGTATAAATGATTACTCCAGGAAAATTGGGTAACAC  1000
      ||||||||||||||||||||||||| |||| ||||  |||||||| ||||
seq2  TCTCCCACGGTAGCAGTATAAATGA-TACT-CAGG--AATTGGGT-ACAC  990

seq1  TTAGTCAGAGAAAAGCATCCATGTGCTGAGTTTGATTTCATG-TTTTTTC  1049
      |||||||||| ||||||||||||||||||| ||||||  ||| |||||||
seq2  TTAGTCAGAG-AAAGCATCCATGTGCTGAG-TTGATT--ATGTTTTTTTC  1036

seq1  TGCCAAGCAGCCCATTTTCAGATAATTTTGTCTTGTTAGCCTCGAGTTAC  1099
      |||  ||||||||| |||||||| ||||||||||| ||||||||||||||
seq2  TGC--AGCAGCCCA-TTTCAGATTATTTTGTCTTG-TAGCCTCGAGTTAC  1082

seq1  TGAATTTTGTGTCATGACTTTTTGCCAAATCTTTTATGACAGTTGTATTC  1149
      |||| |||||||||||||||||   ||||| ||||||||| | ||  |||
seq2  TGAA-TTTGTGTCATGACTTTT--GCAAAT-TTTTATGACTG-TGATTTC  1127

seq1  CAACATAAAGAAGTCAGTCACAAAACAGCACAGTGTGTGGAGT-TGCATG  1198
      ||||||| | |||||||||  || ||| ||  |||||  ||||   ||||
seq2  CAACATAGA-AAGTCAGTCCAAACACACCA-GGTGTG-AGAGTGCACATG  1174

seq1  CTCTG  1203
      |||||
seq2  CTCTG  1179