BAC Information

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BAC

Clone NameB6Ng01-079H16
Chromosome2 (Build37)
Map Location 56,282,502 - 56,426,400
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079H16.bB6Ng01-079H16.g
ACCDH894878DH894879
length5901,124
definitionDH894878|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H16, 5' end.DH894879|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,282,502 - 56,283,097)(56,425,252 - 56,426,400)
sequence
caatttagaatatatatttcactttctttttcttttttttaattaatatt
tttattacatattttcctcaattatatttccaatgctatcccaaaagtcc
cccataccctctcccccacttccctacccactcattcacattttttttgg
ccctggcgtttcccctgtactggggcatatacagtttgcatgtccaatgg
gcctctctttccagtgatggccgactaggccatcttttgatatatttcac
tttcttatttaacagcaagattgcattaaacctattttacactgttcttt
atttacaaacatttatcttcctatagagtgaaaactgtctcaaagttcag
aacaaaatattatgtggtccaggactatttctatatcacctctctactaa
gctttcatatatcatttatccaaaacaatacttaaaatatttgattatct
atgtaattcaaacagtgaataatatcacaaaagtatcaagtgatagtaga
aaatatatataagagtaatcctgcttaaaaataaatctaaagtttagttc
aaggaaacttgatatcctaatttctttagcctgtacctgt
gaattcactgagaagtgtgcctttctgatcatttacttaagctctctggt
tttgaaggaaacatcattgctctcttagaactggccagaaagtctggtaa
ttggaagtcaaagttcccttttggagatgatggcctttctcttaatatac
tttggccacttacttaatagggttacacattaataaaaaaatcccacaga
ttaaagctatggggttatttttctaataaaaaaggctccttaaatatctg
gcattttacatcaaattttaatgtttccaatcttgaaatttcagcaaaaa
aatggttgatgtgggttctgttttgataaattataaaggtaaaccttaac
gaccattgaatagaatcacctttgctactcagggtaatagaataaaataa
accaagcaaacacatttttcttactgccacatgcctctccttaataataa
cttttgtcttttttgcagaaatagatgctgtgtaagtctcattaaattac
ctgacgggtggaataaatacacaggccatatagctcggcagtccatagta
aactgagcaagggtcttgatatcgcagagttctgcttatttacacatgcc
ttggactcttctcacagatatgtaaattattccagttaaaactaaatgct
aaagtctacaccattagtcttccacttcatgatctccacatggggctgtt
agaaggataatgtaccatacaatacacggtttacttttaattaatagaaa
aaaatgtgaaatgaatattaaatgtagcttaatgtgaaagaaagctcaaa
gcagtttggtgtaatttatttattttaaaaatattcagtcctgcttcgtg
attagaaaatacgtaataatttactggactagaaggcttgctggagcctt
tggaaggaacaaagaatttgaagaggcctttgcagccagacagaagtctg
gctggatacaaatgctaagattgcagaccaggctctgcttgtttttgcat
ctaacagactgtccatctgagactcacatccctgctggaaattgtccctg
ctctatacatacaagtctagctgctataatctgagagcaaaaagctcatc
aaatagagcttataaacccagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56282502_56283097
seq2: B6Ng01-079H16.b_45_640

seq1  GAATTCCAATTTAGAATATATATTTCACTTTCTTTTTCTTTTTTTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTTAGAATATATATTTCACTTTCTTTTTCTTTTTTTTAATT  50

seq1  AATATTTTTATTACATATTTTCCTCAATTATATTTCCAATGCTATCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTATTACATATTTTCCTCAATTATATTTCCAATGCTATCCCAA  100

seq1  AAGTCCCCCATACCCTCTCCCCCACTTCCCTACCCACTCATTCACATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCCATACCCTCTCCCCCACTTCCCTACCCACTCATTCACATTTT  150

seq1  TTTTGGCCCTGGCGTTTCCCCTGTACTGGGGCATATACAGTTTGCATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCCCTGGCGTTTCCCCTGTACTGGGGCATATACAGTTTGCATGTC  200

seq1  CAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATA  250

seq1  TTTCACTTTCTTATTTAACAGCAAGATTGCATTAAACCTATTTTACACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTTCTTATTTAACAGCAAGATTGCATTAAACCTATTTTACACTG  300

seq1  TTCTTTATTTACAAACATTTATCTTCCTATAGAGTGAAAACTGTCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTTACAAACATTTATCTTCCTATAGAGTGAAAACTGTCTCAAA  350

seq1  GTTCAGAACAAAATATTATGTGGTCCAGGACTATTTCTATATCACCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAACAAAATATTATGTGGTCCAGGACTATTTCTATATCACCTCTC  400

seq1  TACTAAGCTTTCATATATCATTTATCCAAAACAATACTTAAAATATTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGCTTTCATATATCATTTATCCAAAACAATACTTAAAATATTTGA  450

seq1  TTATCTATGTAATTCAAACAGTGAATAATATCACAAAAGTATCAAGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATGTAATTCAAACAGTGAATAATATCACAAAAGTATCAAGTGAT  500

seq1  AGTAGAAAATATATATAAGAGTAATCCTGCTTAAAAATAAATCTAAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAATATATATAAGAGTAATCCTGCTTAAAAATAAATCTAAAGTT  550

seq1  TAGTTCAAGGAAACTTGATATCCTAATTTCTTAAGCCTGTACCTGT  596
      |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGTTCAAGGAAACTTGATATCCTAATTTCTTTAGCCTGTACCTGT  596

seq1: chr2_56425252_56426400
seq2: B6Ng01-079H16.g_70_1193 (reverse)

seq1  GATCTTGGGTTTTAATTAAAAGCTCTATTTGATGAGCTTTTTTGCTCTCA  50
      |||| |||||     ||| |||||||||||||||||| ||||||||||||
seq2  GATC-TGGGT-----TTATAAGCTCTATTTGATGAGC-TTTTTGCTCTCA  43

seq1  GATTTAATAGCAGACCTAGACTTTGTATGGTATAGAGCAGGGGACAATCT  100
      ||||  |||||||  |||||| |||||| |||||||||| |||||||| |
seq2  GATT--ATAGCAG--CTAGAC-TTGTAT-GTATAGAGCA-GGGACAATTT  86

seq1  -CAGCAGGGAATGTGGAGTCTCAGATGGACAAGGTCTGTTAGGATGCAAA  149
       |||||||| |||| ||||||||||||||||  |||||||| ||||||||
seq2  CCAGCAGGG-ATGT-GAGTCTCAGATGGACA--GTCTGTTA-GATGCAAA  131

seq1  AAACCAAGCAGAGCCTGGTCTTGCCAATCTTAGCCTTTGTATCCAGCCCA  199
      ||  |||||||||||||||||   |||||||||| |||||||||||||  
seq2  AA--CAAGCAGAGCCTGGTCT--GCAATCTTAGCATTTGTATCCAGCC--  175

seq1  GGACTTCTGTCTGGCTTGCAAAGGCCTCTTCAAATTCTTTGTTCCTTCCA  249
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGACTTCTGTCTGGC-TGCAAAGGCCTCTTCAAATTCTTTGTTCCTTCCA  224

seq1  AAGGCTCCAGCAAGCCTTCTAGTCCAGTAAATTATTACGTATTTTCTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCAGCAAGCCTTCTAGTCCAGTAAATTATTACGTATTTTCTAAT  274

seq1  CACGAAGCAGGACTGAATATTTTTAAAATAAATAAATTACACCAAACTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAGCAGGACTGAATATTTTTAAAATAAATAAATTACACCAAACTGC  324

seq1  TTTGAGCTTTCTTTCACATTAAGCTACATTTAATATTCATTTCACATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTTTCTTTCACATTAAGCTACATTTAATATTCATTTCACATTTT  374

seq1  TTTCTATTAATTAAAAGTAAACCGTGTATTGTATGGTACATTATCCTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTAATTAAAAGTAAACCGTGTATTGTATGGTACATTATCCTTCT  424

seq1  AACAGCCCCATGTGGAGATCATGAAGTGGAAGACTAATGGTGTAGACTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCCATGTGGAGATCATGAAGTGGAAGACTAATGGTGTAGACTTT  474

seq1  AGCATTTAGTTTTAACTGGAATAATTTACATATCTGTGAGAAGAGTCCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAGTTTTAACTGGAATAATTTACATATCTGTGAGAAGAGTCCAA  524

seq1  GGCATGTGTAAATAAGCAGAACTCTGCGATATCAAGACCCTTGCTCAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGTAAATAAGCAGAACTCTGCGATATCAAGACCCTTGCTCAGTT  574

seq1  TACTATGGACTGCCGAGCTATATGGCCTGTGTATTTATTCCACCCGTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGACTGCCGAGCTATATGGCCTGTGTATTTATTCCACCCGTCAG  624

seq1  GTAATTTAATGAGACTTACACAGCATCTATTTCTGCAAAAAAGACAAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTAATGAGACTTACACAGCATCTATTTCTGCAAAAAAGACAAAAG  674

seq1  TTATTATTAAGGAGAGGCATGTGGCAGTAAGAAAAATGTGTTTGCTTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAAGGAGAGGCATGTGGCAGTAAGAAAAATGTGTTTGCTTGGT  724

seq1  TTATTTTATTCTATTACCCTGAGTAGCAAAGGTGATTCTATTCAATGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTCTATTACCCTGAGTAGCAAAGGTGATTCTATTCAATGGTC  774

seq1  GTTAAGGTTTACCTTTATAATTTATCAAAACAGAACCCACATCAACCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGTTTACCTTTATAATTTATCAAAACAGAACCCACATCAACCATT  824

seq1  TTTTTGCTGAAATTTCAAGATTGGAAACATTAAAATTTGATGTAAAATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTGAAATTTCAAGATTGGAAACATTAAAATTTGATGTAAAATGC  874

seq1  CAGATATTTAAGGAGCCTTTTTTATTAGAAAAATAACCCCATAGCTTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTAAGGAGCCTTTTTTATTAGAAAAATAACCCCATAGCTTTAA  924

seq1  TCTGTGGGATTTTTTTATTAATGTGTAACCCTATTAAGTAAGTGGCCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGATTTTTTTATTAATGTGTAACCCTATTAAGTAAGTGGCCAAA  974

seq1  GTATATTAAGAGAAAGGCCATCATCTCCAAAAGGGAACTTTGACTTCCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAAGAGAAAGGCCATCATCTCCAAAAGGGAACTTTGACTTCCAA  1024

seq1  TTACCAGACTTTCTGGCCAGTTCTAAGAGAGCAATGATGTTTCCTTCAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGACTTTCTGGCCAGTTCTAAGAGAGCAATGATGTTTCCTTCAAA  1074

seq1  ACCAGAGAGCTTAAGTAAATGATCAGAAAGGCACACTTCTCAGTGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAGCTTAAGTAAATGATCAGAAAGGCACACTTCTCAGTGAATTC  1124