BAC Information

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BAC

Clone NameB6Ng01-079L13
Chromosome2 (Build37)
Map Location 35,504,145 - 35,590,478
singlet/doubletdoublet
Overlap geneDab2ip
Upstream geneLOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
Downstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079L13.bB6Ng01-079L13.g
ACCDH895049DH895050
length1,1471,109
definitionDH895049|Mus musculus domesticus DNA, BAC clone: B6Ng01-079L13, 5' end.DH895050|Mus musculus domesticus DNA, BAC clone: B6Ng01-079L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,504,145 - 35,505,309)(35,589,357 - 35,590,478)
sequence
gaattcttacagtggggacctttatgactgggttttaagggacatgcagg
agtttctcaacaaaagagacaatagttagaggaagatagacccaaacagg
aacagaccaatggtcccgagtgacgtgctggaagcaggaaggaaaagctg
agggagaagaaatgtgaggggcgttagtgggagcacagaagcctttgtac
tttgtacccacttgaggttttcagctgttctgtcctctccctaccgtagt
ctccctatgtgtgaacaggcgagtagaaggtggatgaggtggccgaagga
tctaccaatctggccatgtgtgccttctgcagaaggaggcccttttctag
agagggactgttttaggtaggttttggtcagaccaccagatgcaggagtt
gttcaggatgtgcaggtctagggggcagcaacaatctcctggctgaatga
acaggatttgtgcttattcggggagtcagggtgccattcaggatgggtta
aaggatcaagccaactgctcttctcacctaagccttgatcccctgagctt
acatgcccttgtgggagcctgcttggtcagttacaggaagcactagccca
gcctgggcagcttggatagggacatggagaggaaagaaagggaacaaaca
cagctctgcacaccttctttgcagctctagaaccttccagagtgtccctt
ggtctctgccggggcctcccttatgaccgtgagggtgtgaagactgcttc
ttgggctgtgtcacaggctccttacaggcgttctcattcagggtggcatt
ctgggttcagtgaggggaggtggaatggtgtgaggcttttcctctcgacc
tgtgctccagggagacagtgctgacgtcttctccacagagcacctgggag
ggccactgctcccctctgtgggtaagtcaccttgtctccagacctctttc
ttcttttcaacagggcagctgtgagggcttcaagcctgcagtaggcggtt
agccggtgtctaccctgctgctgtgttcagggtcacccttccatactttg
ccagaacccagtagcgggcctatttctcccctccactgtccttacttccc
aaagcaagctatcctgataagatcctgaggtgccgctgggaactagg
gaattcctttggtgtaagttctgaaacgataacactctgtgatctttgtc
ctgcagaataaatggtgtctgctggagtgccctggagacagactgacttt
gcatctatttgtaagatttgttttattgaaattaccaattgtctgtacgc
acagctctttgaattctcctctgaattggctgtgacaactgactggattc
ttcattaattagtgaattaaaaaaaaacactaaacatatgttcatcttat
atttgtgtgtaagtcttggttgtcaaaaaaaaaaaagtctgctttcacac
aattgctactttctgtcatgaaagggtaaaagctgtaaacattttgtaag
agacctttctgagactgaggccttctccctccagactcgaagagtgtgga
gtcccctgacctcatgggtctctctgtgggcaaagccaatcttcacacat
cagcaatgtgtgggctccccctataactgcagggcccctctctagccctc
agggcctcggtgccaaccttttggctggtgggaaggacaggcagaagggc
agaccttggtccccagagaatcaggtgatttgagtagctggacctttgaa
gggctgtttgtcttcttatttcaagacactcagaaataaatgacaaccag
gagtcacaaagatagcagtcaattctaaacatggatgtggaagacatgac
catcttcctatgaattcagcagacagtgtaatatagccatagctcaggat
ttcggtgtgccgcagaccagcagacaacccaccttggtcacaggtctggt
aactactcaatccagacagtgtgatgctcactgggttggtcaggtttgag
aagccctgtatgcccacctctctcccgccgacacaaccacgccttccctc
ctgcagctgctggggaaagcagcatctgtcttgtatctttattttgtatt
ctgccacttccctagcaaagaccatttgggggatgggaaattttagaaaa
tcccattttgtttgttttctgcccgtgttcctcgggaagtacatggagct
ctttctgcgttcttcaccactctacttccttcccaataaggagggattgg
ggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35504145_35505309
seq2: B6Ng01-079L13.b_44_1190

seq1  GAATTCTTACAGTGGGGACCTTTATGACTGGGTTTTAAGGGACATGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAGTGGGGACCTTTATGACTGGGTTTTAAGGGACATGCAGG  50

seq1  AGTTTCTCAACAAAAGAGACAATAGTTAGAGGAAGATAGACCCAAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCAACAAAAGAGACAATAGTTAGAGGAAGATAGACCCAAACAGG  100

seq1  AACAGACCAATGGTCCCGAGTGACGTGCTGGAAGCAGGAAGGAAAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCAATGGTCCCGAGTGACGTGCTGGAAGCAGGAAGGAAAAGCTG  150

seq1  AGGGAGAAGAAATGTGAGGGGCGTTAGTGGGAGCACAGAAGCCTTTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGAAATGTGAGGGGCGTTAGTGGGAGCACAGAAGCCTTTGTAC  200

seq1  TTTGTACCCACTTGAGGTTTTCAGCTGTTCTGTCCTCTCCCTACCGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCCACTTGAGGTTTTCAGCTGTTCTGTCCTCTCCCTACCGTAGT  250

seq1  CTCCCTATGTGTGAACAGGCGAGTAGAAGGTGGATGAGGTGGCCGAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTATGTGTGAACAGGCGAGTAGAAGGTGGATGAGGTGGCCGAAGGA  300

seq1  TCTACCAATCTGGCCATGTGTGCCTTCTGCAGAAGGAGGCCCTTTTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAATCTGGCCATGTGTGCCTTCTGCAGAAGGAGGCCCTTTTCTAG  350

seq1  AGAGGGACTGTTTTAGGTAGGTTTTGGTCAGACCACCAGATGCAGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGACTGTTTTAGGTAGGTTTTGGTCAGACCACCAGATGCAGGAGTT  400

seq1  GTTCAGGATGTGCAGGTCTAGGGGGCAGCAACAATCTCCTGGCTGAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGATGTGCAGGTCTAGGGGGCAGCAACAATCTCCTGGCTGAATGA  450

seq1  ACAGGATTTGTGCTTATTCGGGGAGTCAGGGTGCCATTCAGGATGGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTTGTGCTTATTCGGGGAGTCAGGGTGCCATTCAGGATGGGTTA  500

seq1  AAGGATCAAGCCAACTGCTCTTCTCACCTAAGCCTTGATCCCCTGAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCAAGCCAACTGCTCTTCTCACCTAAGCCTTGATCCCCTGAGCTT  550

seq1  ACATGCCCTTGTGGGAGCCTGCTTGGTCAGTTACAGGAAGCACTAGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCCTTGTGGGAGCCTGCTTGGTCAGTTACAGGAAGCACTAGCCCA  600

seq1  GCCTGGGCAGCTTGGATAGGGACATGGAGAGGAAAGAAAGGGAACAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGCAGCTTGGATAGGGACATGGAGAGGAAAGAAAGGGAACAAACA  650

seq1  CAGCTCTGCACACCTTCTTTGCAGCTCTAGAACCTTCCAGAGTGTCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGCACACCTTCTTTGCAGCTCTAGAACCTTCCAGAGTGTCCCTT  700

seq1  GGTCTCTGCCGGGGCCTCCCTTATGACCGTGAGGGTGTGAAGACTGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGCCGGGGCCTCCCTTATGACCGTGAGGGTGTGAAGACTGCTTC  750

seq1  TTGGGCTGTGTCACAGGCTCCTTACAGGCGTTCTCATTCAGGGTGGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGTGTCACAGGCTCCTTACAGGCGTTCTCATTCAGGGTGGCATT  800

seq1  CTGGGTTCAGTGAAGGGGAGGTGGAATGGTGTGAGGCTTTTCCTCTCGAC  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCAGTG-AGGGGAGGTGGAATGGTGTGAGGCTTTTCCTCTCGAC  849

seq1  CTGTGCTCCAGGGAGACAGTGCTGACGTC-TCCCCACAGAGCACCTGGGA  899
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  CTGTGCTCCAGGGAGACAGTGCTGACGTCTTCTCCACAGAGCACCTGGGA  899

seq1  GGGCCACTGCTCCCCTCTGTGGGTAAGTCACC-TGTCTCCAGACCTCTTT  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGCCACTGCTCCCCTCTGTGGGTAAGTCACCTTGTCTCCAGACCTCTTT  949

seq1  CTTCATCTCCAAACAGGGCAGCTGTGAGGGCTTCAAAGCCTGCAGGTAGG  998
      |||| | ||  ||||||||||||||||||||||| ||||||||| |||||
seq2  CTTCTTTTC--AACAGGGCAGCTGTGAGGGCTTC-AAGCCTGCA-GTAGG  995

seq1  CGGTTAGCCGGTGTCTAACCCTGCTGCTTGTGTTTCAGGGTCCACCCTTC  1048
      |||||||||||||||| |||||||||| |||| |||||||| ||||||| 
seq2  CGGTTAGCCGGTGTCT-ACCCTGCTGC-TGTG-TTCAGGGT-CACCCTT-  1040

seq1  CCATACTTTGCCCAGAACCCCAGGTAGCGGGGCCTATTTCTCCCCCTTCA  1098
      |||||||||| |||||||||   ||||| ||||||||||||||||  || 
seq2  CCATACTTTG-CCAGAACCC--AGTAGC-GGGCCTATTTCTCCCC--TC-  1083

seq1  CACTGTCCCTTACTGCCCCAAAGCAACAGCATCCCTGATAGAGCT-CTGA  1147
      |||||| |||||||  |||||||||  |||   ||||||| || | ||||
seq2  CACTGT-CCTTACT-TCCCAAAGCA--AGCTATCCTGATA-AGATCCTGA  1128

seq1  GGTGCAGCTGGG-ACTAGG  1165
      ||||| |||||| ||||||
seq2  GGTGCCGCTGGGAACTAGG  1147

seq1: chr2_35589357_35590478
seq2: B6Ng01-079L13.g_71_1179 (reverse)

seq1  CCCCCCCCCCCATCACTTCCTTAATGGGGAAGGAAGTAAGAGGTGGTGAA  50
      ||||||||||||   | ||||| || ||||||||||| ||| ||||||||
seq2  CCCCCCCCCCCAATCCCTCCTT-ATTGGGAAGGAAGT-AGA-GTGGTGAA  47

seq1  GAAACGGCAGAAAAGAAGCTCATTGTACTTCCCGAGGGACACGGGCAAGA  100
      |||   |||||||   |||||  |||||||||||||| |||||||| |||
seq2  GAA--CGCAGAAA--GAGCTCCATGTACTTCCCGAGGAACACGGGC-AGA  92

seq1  AAACAAAACAAAATGGGATTTTCTTAAAATTTCCCATCCCCCAAATGGTC  150
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAC-AAACAAAATGGGATTTTC-TAAAATTTCCCATCCCCCAAATGGTC  140

seq1  TTTGCTTAGGGAAGTGGCAGAATACAAAATAAAGATACAAGACAGATGCT  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGC-TAGGGAAGTGGCAGAATACAAAATAAAGATACAAGACAGATGCT  189

seq1  GCTTTCCCCAGCAGCTGGCAGGAGGGAAGGCGTGGTTGGTGTCGGCGGGA  250
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  GCTTTCCCCAGCAGCT-GCAGGAGGGAAGGCGTGGTT-GTGTCGGCGGGA  237

seq1  GAGAGGTGGGCATACAGGGCTTCTCAAACCTGACCAACCCAGTGAGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGGCATACAGGGCTTCTCAAACCTGACCAACCCAGTGAGCATC  287

seq1  ACACTGTCTGGATTGAGTAGTTACCAGACCTGTGACCAAGGTGGGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCTGGATTGAGTAGTTACCAGACCTGTGACCAAGGTGGGTTGTC  337

seq1  TGCTGGTCTGCGGCACACCGAAATCCTGAGCTATGGCTATATTACACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCTGCGGCACACCGAAATCCTGAGCTATGGCTATATTACACTGT  387

seq1  CTGCTGAATTCATAGGAAGATGGTCATGTCTTCCACATCCATGTTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAATTCATAGGAAGATGGTCATGTCTTCCACATCCATGTTTAGAA  437

seq1  TTGACTGCTATCTTTGTGACTCCTGGTTGTCATTTATTTCTGAGTGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGCTATCTTTGTGACTCCTGGTTGTCATTTATTTCTGAGTGTCTT  487

seq1  GAAATAAGAAGACAAACAGCCCTTCAAAGGTCCAGCTACTCAAATCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGAAGACAAACAGCCCTTCAAAGGTCCAGCTACTCAAATCACCT  537

seq1  GATTCTCTGGGGACCAAGGTCTGCCCTTCTGCCTGTCCTTCCCACCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTGGGGACCAAGGTCTGCCCTTCTGCCTGTCCTTCCCACCAGCC  587

seq1  AAAAGGTTGGCACCGAGGCCCTGAGGGCTAGAGAGGGGCCCTGCAGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTGGCACCGAGGCCCTGAGGGCTAGAGAGGGGCCCTGCAGTTAT  637

seq1  AGGGGGAGCCCACACATTGCTGATGTGTGAAGATTGGCTTTGCCCACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAGCCCACACATTGCTGATGTGTGAAGATTGGCTTTGCCCACAGA  687

seq1  GAGACCCATGAGGTCAGGGGACTCCACACTCTTCGAGTCTGGAGGGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCATGAGGTCAGGGGACTCCACACTCTTCGAGTCTGGAGGGAGAA  737

seq1  GGCCTCAGTCTCAGAAAGGTCTCTTACAAAATGTTTACAGCTTTTACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGTCTCAGAAAGGTCTCTTACAAAATGTTTACAGCTTTTACCCT  787

seq1  TTCATGACAGAAAGTAGCAATTGTGTGAAAGCAGACTTTTTTTTTTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACAGAAAGTAGCAATTGTGTGAAAGCAGACTTTTTTTTTTTTGA  837

seq1  CAACCAAGACTTACACACAAATATAAGATGAACATATGTTTAGTGTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGACTTACACACAAATATAAGATGAACATATGTTTAGTGTTTTT  887

seq1  TTTTAATTCACTAATTAATGAAGAATCCAGTCAGTTGTCACAGCCAATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTCACTAATTAATGAAGAATCCAGTCAGTTGTCACAGCCAATTC  937

seq1  AGAGGAGAATTCAAAGAGCTGTGCGTACAGACAATTGGTAATTTCAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAATTCAAAGAGCTGTGCGTACAGACAATTGGTAATTTCAATAA  987

seq1  AACAAATCTTACAAATAGATGCAAAGTCAGTCTGTCTCCAGGGCACTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCTTACAAATAGATGCAAAGTCAGTCTGTCTCCAGGGCACTCCA  1037

seq1  GCAGACACCATTTATTCTGCAGGACAAAGATCACAGAGTGTTATCGTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACCATTTATTCTGCAGGACAAAGATCACAGAGTGTTATCGTTTC  1087

seq1  AGAACTTACACCAAAGGAATTC  1122
      ||||||||||||||||||||||
seq2  AGAACTTACACCAAAGGAATTC  1109