BAC Information

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BAC

Clone NameB6Ng01-080C03
Chromosome2 (Build37)
Map Location 120,232,101 - 120,371,371
singlet/doubletdoublet
Overlap geneGanc, Capn3, Zfp106
Upstream geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a
Downstream geneSnap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C03.bB6Ng01-080C03.g
ACCDH895354DH895355
length7711,103
definitionDH895354|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C03, 5' end.DH895355|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,370,601 - 120,371,371)(120,232,101 - 120,233,210)
sequence
gaattcaacacaactcaggcaagttgaactggtgtgaatcagctcgtaaa
cggacttattcctgcagtgttggtcttgcagctgggactttccataattt
tactttaggaaaattaatttcttgctgaaatagcctaggaatactgaagc
ttatttgtgtctgcagaaccaaataaagagatcttaggtgtatttgaaaa
tgttctgctaatggtttaaagttttaagatgtttaaaagaggcttagaca
gaatgtggtatttgtgtgtgttccatgtccttttttctgtgtgtcttctt
tactagtataaagattgaaatgtagattaaaggtaacattggtaaattaa
gaaatatgaattatattttattgtatgaataatagttcaaagtttctgtg
aagctactatcctgttgtttgatgatactaatgtgttaactctattgtaa
gtttattgtctgtaaatgtatgtgctattattagactttaacatctcagc
atataaatggacttctttcttgcctggttcctgtaatgtgtaatggttgt
gtttcatggcaacaaaaagaagtcttcacttcaaaagaccaatgtgctta
tatatctgtttttagcttttcaatctttgatgagcaagctgcaatccata
taaccacagaggttaggcatagaggaagggactaggtgtgagggatgact
ctccctaagaagaggaaatagaagagatagctgtggtgggcaggaggggg
tggtaatagggaagaggatga
gaattcccaaattattcccactaggcttttgagaactgaggggataaggt
catactctctaggaaatctaatatttactattcaattatttaaattgtgt
tttattttaaaatcctaagtacttttaaataattttaaatgtgtgtcctc
tcaaagataattaacttagttgatttgaaactcacatagaaagaaataga
ttaaaattattactcctacctctgctttttcatcctagttctcttctccc
tttaaataagcatatttattcatgtcttatgtattcttccagtgttcttt
gtaactatatattcttatatcacctctttgtttatacctacaaataaatt
cgcatatacattgttctgtgccccctcactgtctgctttgtatcttagtc
tggaaagcttctgcttcaggacttggagattttcctctctgctcacagta
tcccactggatagacgcattataatttattgggttccagttccacttgtt
acagtcttgggctgttgtttcttcttaatcttttgctatgagagttccac
catatgaagagctgtgcatgtcatttcctatacacacgagtgatttgtaa
tatggttttctaggagtggagctggaaatgtggttcagccatagagcact
tccttatgtgcaaggctctgggcctgatccttagcactgaagaaaaacaa
gagcaaaacaacaacagaagcaggatttctaagaattcagctattggatt
gaagagtaaataatcttgaaatgtgttgactattgatagatctccctctg
taggggtcttttatacttactttaacattctatgaggctatttgagacta
aaaaacaatgtggaggtccttgatccacttggacttgagccttgtacagg
gagataagaatggatctatttgcattcttctatacgttgatgccagttga
ccagcaccatttgtggaaatgctgtctttttttcactggatggtttccct
ctttgtcaagatcaagtgaccatttgtgtgagtcatttctgggtcttcag
ttctatccattgatctacctgctgtccctggtaaataaccatgcagattt
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120370601_120371371
seq2: B6Ng01-080C03.b_48_818 (reverse)

seq1  TCATCCTCTTCCCTATTACCACCCCCTCCTGCCCACCACAGCTATCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTCTTCCCTATTACCACCCCCTCCTGCCCACCACAGCTATCTCTT  50

seq1  CTATTTCCTCTTCTTAGGGAGAGTCATCCCTCACACCTAGTCCCTTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCCTCTTCTTAGGGAGAGTCATCCCTCACACCTAGTCCCTTCCTC  100

seq1  TATGCCTAACCTCTGTGGTTATATGGATTGCAGCTTGCTCATCAAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTAACCTCTGTGGTTATATGGATTGCAGCTTGCTCATCAAAGATT  150

seq1  GAAAAGCTAAAAACAGATATATAAGCACATTGGTCTTTTGAAGTGAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTAAAAACAGATATATAAGCACATTGGTCTTTTGAAGTGAAGAC  200

seq1  TTCTTTTTGTTGCCATGAAACACAACCATTACACATTACAGGAACCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGTTGCCATGAAACACAACCATTACACATTACAGGAACCAGGC  250

seq1  AAGAAAGAAGTCCATTTATATGCTGAGATGTTAAAGTCTAATAATAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAGTCCATTTATATGCTGAGATGTTAAAGTCTAATAATAGCAC  300

seq1  ATACATTTACAGACAATAAACTTACAATAGAGTTAACACATTAGTATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTACAGACAATAAACTTACAATAGAGTTAACACATTAGTATCAT  350

seq1  CAAACAACAGGATAGTAGCTTCACAGAAACTTTGAACTATTATTCATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAGGATAGTAGCTTCACAGAAACTTTGAACTATTATTCATACA  400

seq1  ATAAAATATAATTCATATTTCTTAATTTACCAATGTTACCTTTAATCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATAATTCATATTTCTTAATTTACCAATGTTACCTTTAATCTAC  450

seq1  ATTTCAATCTTTATACTAGTAAAGAAGACACACAGAAAAAAGGACATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATCTTTATACTAGTAAAGAAGACACACAGAAAAAAGGACATGGA  500

seq1  ACACACACAAATACCACATTCTGTCTAAGCCTCTTTTAAACATCTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAATACCACATTCTGTCTAAGCCTCTTTTAAACATCTTAAAA  550

seq1  CTTTAAACCATTAGCAGAACATTTTCAAATACACCTAAGATCTCTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACCATTAGCAGAACATTTTCAAATACACCTAAGATCTCTTTATT  600

seq1  TGGTTCTGCAGACACAAATAAGCTTCAGTATTCCTAGGCTATTTCAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGCAGACACAAATAAGCTTCAGTATTCCTAGGCTATTTCAGCAA  650

seq1  GAAATTAATTTTCCTAAAGTAAAATTATGGAAAGTCCCAGCTGCAAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAATTTTCCTAAAGTAAAATTATGGAAAGTCCCAGCTGCAAGACC  700

seq1  AACACTGCAGGAATAAGTCCGTTTACGAGCTGATTCACACCAGTTCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGCAGGAATAAGTCCGTTTACGAGCTGATTCACACCAGTTCAACT  750

seq1  TGCCTGAGTTGTGTTGAATTC  771
      |||||||||||||||||||||
seq2  TGCCTGAGTTGTGTTGAATTC  771

seq1: chr2_120232101_120233210
seq2: B6Ng01-080C03.g_67_1169

seq1  GAATTCCCAAATTATTCCCACTAGGCTTTTGAGAACTGAGGGGATAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAATTATTCCCACTAGGCTTTTGAGAACTGAGGGGATAAGGT  50

seq1  CATACTCTCTAGGAAATCTAATATTTACTATTCAATTATTTAAATTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCTCTAGGAAATCTAATATTTACTATTCAATTATTTAAATTGTGT  100

seq1  TTTATTTTAAAATCCTAAGTACTTTTAAATAATTTTAAATGTGTGTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAAATCCTAAGTACTTTTAAATAATTTTAAATGTGTGTCCTC  150

seq1  TCAAAGATAATTAACTTAGTTGATTTGAAACTCACATAGAAAGAAATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATAATTAACTTAGTTGATTTGAAACTCACATAGAAAGAAATAGA  200

seq1  TTAAAATTATTACTCCTACCTCTGCTTTTTCATCCTAGTTCTCTTCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTATTACTCCTACCTCTGCTTTTTCATCCTAGTTCTCTTCTCCC  250

seq1  TTTAAATAAGCATATTTATTCATGTCTTATGTATTCTTCCAGTGTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAGCATATTTATTCATGTCTTATGTATTCTTCCAGTGTTCTTT  300

seq1  GTAACTATATATTCTTATATCACCTCTTTGTTTATACCTACAAATAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTATATATTCTTATATCACCTCTTTGTTTATACCTACAAATAAATT  350

seq1  CGCATATACATTGTTCTGTGCCCCCTCACTGTCTGCTTTGTATCTTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATATACATTGTTCTGTGCCCCCTCACTGTCTGCTTTGTATCTTAGTC  400

seq1  TGGAAAGCTTCTGCTTCAGGACTTGGAGATTTTCCTCTCTGCTCACAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCTTCTGCTTCAGGACTTGGAGATTTTCCTCTCTGCTCACAGTA  450

seq1  TCCCACTGGATAGACGCATTATAATTTATTGGGTTCCAGTTCCACTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGGATAGACGCATTATAATTTATTGGGTTCCAGTTCCACTTGTT  500

seq1  ACAGTCTTGGGCTGTTGTTTCTTCTTAATCTTTTGCTATGAGAGTTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTGGGCTGTTGTTTCTTCTTAATCTTTTGCTATGAGAGTTCCAC  550

seq1  CATATGAAGAGCTGTGCATGTCATTTCCTATACACACGAGTGATTTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAAGAGCTGTGCATGTCATTTCCTATACACACGAGTGATTTGTAA  600

seq1  TATGGTTTTCTAGGAGTGGAGCTGGAAATGTGGTTCAGCCATAGAGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTCTAGGAGTGGAGCTGGAAATGTGGTTCAGCCATAGAGCACT  650

seq1  TCCTTATGTGCAAGGCTCTGGGCCTGATCCTTAGCACTGAAGAAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGTGCAAGGCTCTGGGCCTGATCCTTAGCACTGAAGAAAAACAA  700

seq1  GAGCAAAACAACAACAGAAGCAGGATTTCTAAGAATTCAGCTATTGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAACAACAACAGAAGCAGGATTTCTAAGAATTCAGCTATTGGATT  750

seq1  GAAGAGTAAATAATCTTGAAATGTGTTGACTATTGATAGATCTCCCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTAAATAATCTTGAAATGTGTTGACTATTGATAGATCTCCCTCTG  800

seq1  TAGGGGTCTTTTATACTTACTTTAACATTCTATGAGGCTATTTGAGACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTCTTTTATACTTACTTTAACATTCTATGAGGCTATTTGAGACTA  850

seq1  AAAAACAATGTGGAGGTCCTTGATCCACTTGGACTTGAGCCTTGTACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATGTGGAGGTCCTTGATCCACTTGGACTTGAGCCTTGTACAGG  900

seq1  GAGATAAGAATGGATCTATTTGCATTCTTCTATACGTTGATGCCAGTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGATAAGAATGGATCTATTTGCATTCTTCTATACGTTGATGCCAGTTG-  949

seq1  ACCAGCACCATTTGTTGGAAATGCTGTCTTTTTTCCACTGGATGGTTTTC  1000
      |||||||||||||| ||||||||||||||||||| |||||||||| ||||
seq2  ACCAGCACCATTTG-TGGAAATGCTGTCTTTTTTTCACTGGATGG-TTTC  997

seq1  ACTCCTTTGTCAAAGATCAAGTGACCATTTGTGTGAGTTCATTTCTGGGT  1050
       || ||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  CCT-CTTTGTC-AAGATCAAGTGACCATTTGTGTGAG-TCATTTCTGGGT  1044

seq1  CTTCAGTTCTATTCCATTGATCTACCTGCCTGTCACT-GTACAATACCAT  1099
      ||||||||||| |||||||||||||||| ||||| || ||| |  |||||
seq2  CTTCAGTTCTA-TCCATTGATCTACCTG-CTGTCCCTGGTAAATAACCAT  1092

seq1  GCAGTTTTTAT  1110
      |||| ||||||
seq2  GCAGATTTTAT  1103