BAC Information

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BAC

Clone NameB6Ng01-080C04
Chromosome2 (Build37)
Map Location 69,575,294 - 69,703,565
singlet/doubletdoublet
Overlap genePpig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb
Upstream gene4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1
Downstream geneMettl5, 4930550G17Rik, Zfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C04.bB6Ng01-080C04.g
ACCDH895356DH895357
length1,1641,108
definitionDH895356|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C04, 5' end.DH895357|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,575,294 - 69,576,483)(69,702,449 - 69,703,565)
sequence
gaattccagtgcaaaatgaaagtgggagctgatgagaatgaaattttctt
ttcttttcttttcttttttttttttttttttttttttttgagttccttct
ttttattaacacatacccaactacttgtcttctggtttgttgaagcagtt
aggtcagacaacacttgccacagtaatgcctgtcaaagtggcttcccatg
aaaactccagcaccacactcaacagaaggacaactctcgacgaagtcggc
tattttgacgttttggtccgccttatagtatttcagcacagccaacttag
acttcttcctcttatgcttactcttcttgggagtggtgtaagacttcttc
cttctcttagcaccacccgaagtctcaacaccagatgaagggtggactcc
ttaggaatgttgtagtcagacaaagcccggccatcttccagctgcttacc
agcaaagatcagcctctgctgatcaggaggaattccttccttatcctgga
tcttggccgtaacgtgatggtttccccataagggtcttcacaaaaatctg
catcgaggcggtggctccacccacgatggcagatcggaaaggagaatgaa
attttcttaattatgagataaagtatttgacaaaatcaaattactttgat
ggatatattattattattattattatttattttcattttgcttagaaaat
agatagatctggtatttctttgacttgtattcattgtgaattaattttct
ttaaaagtttaatatctcccaccctttagttactaaaagtatatatagta
gatttttcagtgtttgtgtttgtatatccctccctgttttaatggtctta
ggttcagattaataattggattaatgagacaatataggtttcttttccat
acaaaagttgactaagttaagaaaggagatacagccgggcagtggtggca
catgcctttatcccaacacttgggagcagagcaggaggttttctgagttt
aagccagctgtctacagagtgagttccagacagttcaaggctaacacaga
gaaccctgttctaggaacacaaacaacaaaatagaggaaataccgccaca
ggaattggcttggagattcatgattctatacacgctgatatgcccagacc
ttaatattgatatg
gaattccatcttaaagaaatcagcaggagagctagaggatggctcaatgc
ctaagaatgctgctgctcttccagaagacctgaggtaggttctaggactc
ttgtcagttggctcataagagactgtaactacagctccagaggatgacac
ctctgagggccaaatattgatatgcagacagacacagacacacactattt
tttaaaataaggtagatgtgatggctcatgctctttaattctcacacatg
ggaagcagaagcaaggtgatctacctctatgagtttgtgaattttcccca
ggacagccctggatgcataagatgaatggatggataaaaggaaggaaaaa
agtaaaagagaaaaaggagggaggagaggaacgagagggagaaggcaagc
agtagacctgtttactacaatttttacataaagaatatcgtagaactcat
attttaaaaatctatactttagagaagatgattattaattatatattgtt
ggtgaaacaaaactttactctctaaaaacatctcatgtttggtgggggaa
aaggaaaaaataaaaattaagtttataggccatcctggttggggatgttt
aggaaatcttgtctctgagtaattttacttgaactttatattctttaaaa
aaataaaaaaattgggcctcctttaaaaaaaaatatttaggagctggaga
gatgactcagaggttaagagcactgaatggtgaaccagattcaattccca
gcacttccatagggccttataaccatctgttattccagtcctaggggagc
cagtgcacacttctggcttctgagggcaaccaggcatgtacacggcacac
agccatacatgtagacataacatccatacacataaagtacactaaaaata
aatgtattttgaacatggagtatgaaaaggcttttaaccttgaaattctc
aagagggagagaggtgaggctgcagctgtggaggacattatcttttctat
taacaaatttgctatgtccaagcattaacagcaaattaactttatcactg
cttttgcaatatttaagaaaccaaatttttccctatcaaacaaaatgggc
tgaagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_69575294_69576483
seq2: B6Ng01-080C04.b_44_1207

seq1  GAATTCCAGTGCAAAATGAAAGTGGGAGCTGATGAGAATGAAATTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCAAAATGAAAGTGGGAGCTGATGAGAATGAAATTTTCTT  50

seq1  TTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTTCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTTCCTTCT  100

seq1  TTTTATTAACACATACCCAACTACTTGTCTTCTGGTTTGTTGAAGCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAACACATACCCAACTACTTGTCTTCTGGTTTGTTGAAGCAGTT  150

seq1  AGGTCAGACAACACTTGCCACAGTAATGCCTGTCAAAGTGGCTTCCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGACAACACTTGCCACAGTAATGCCTGTCAAAGTGGCTTCCCATG  200

seq1  AAAACTCCAGCACCACACTCAACAGAAGGACAACTCTCGACGAAGTCGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCAGCACCACACTCAACAGAAGGACAACTCTCGACGAAGTCGGC  250

seq1  TATTTTGACGTTTTGGTCCGCCTTATAGTATTTCAGCACAGCCAACTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGACGTTTTGGTCCGCCTTATAGTATTTCAGCACAGCCAACTTAG  300

seq1  ACTTCTTCCTCTTATGCTTACTCTTCTTGGGAGTGGTGTAAGACTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCCTCTTATGCTTACTCTTCTTGGGAGTGGTGTAAGACTTCTTC  350

seq1  CTTCTCTTAGCACCACCCGAAGTCTCAACACCAGATGAAGGGTGGACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTAGCACCACCCGAAGTCTCAACACCAGATGAAGGGTGGACTCC  400

seq1  TTAGGAATGTTGTAGTCAGACAAAGCCCGGCCATCTTCCAGCTGCTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAATGTTGTAGTCAGACAAAGCCCGGCCATCTTCCAGCTGCTTACC  450

seq1  AGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA  500

seq1  TCTTGGCCGTAACGTGATGGTTTCCCCATAAGGGTCTTCACAAAAATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCGTAACGTGATGGTTTCCCCATAAGGGTCTTCACAAAAATCTG  550

seq1  CATCGAGGCGGTGGCTCCACCCACGATGGCAGATCGGAAAGGAGAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAGGCGGTGGCTCCACCCACGATGGCAGATCGGAAAGGAGAATGAA  600

seq1  ATTTTCTTAATTATGAGATAAAGTATTTGACAAAATCAAATTACTTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTAATTATGAGATAAAGTATTTGACAAAATCAAATTACTTTGAT  650

seq1  GGATATATTATTATTATTATTATTATTTATTTTCATTTTGCTTAGAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATTATTATTATTATTATTATTTATTTTCATTTTGCTTAGAAAAT  700

seq1  AGATAGATCTGGTATTTCTTTGACTTGTATTCATTGTGAATTAATTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATCTGGTATTTCTTTGACTTGTATTCATTGTGAATTAATTTTCT  750

seq1  TTAAAAGTTTAATATCTCCCACCCTTTAGTTACTAAAAGTATATATAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTTAATATCTCCCACCCTTTAGTTACTAAAAGTATATATAGTA  800

seq1  GATTTTTCAGTGTTTGTGTTTGTATAT-CCTCTCTGTTTTAATGGTCTTA  849
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  GATTTTTCAGTGTTTGTGTTTGTATATCCCTCCCTGTTTTAATGGTCTTA  850

seq1  GGTTCAGATTAATAATTGGATTAATGAGACAATATAGGTTTC-TTTCCAT  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTTCAGATTAATAATTGGATTAATGAGACAATATAGGTTTCTTTTCCAT  900

seq1  AC-AAAGTTGACTAAGGTTTAAGAAAGGAGATACAGGCCGGGCAGTGGTG  947
      || |||||||||||||  ||||||||||||||||| ||||||||||||||
seq2  ACAAAAGTTGACTAAG--TTAAGAAAGGAGATACA-GCCGGGCAGTGGTG  947

seq1  GCACATGCCTTTAATCCCAACACTTGGGAGGCAGAGGCAGGAGGGTTTCT  997
      |||||||||||| |||||||||||||||| ||||| |||||||| |||||
seq2  GCACATGCCTTT-ATCCCAACACTTGGGA-GCAGA-GCAGGAGGTTTTCT  994

seq1  GAGTTTAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG-TCAGGG  1046
      |||||||| ||||||   ||||||||||||||||||| ||||| ||| ||
seq2  GAGTTTAA-GCCAGC--TGTCTACAGAGTGAGTTCCA-GACAGTTCAAGG  1040

seq1  CT-ACACAGAGAAACCCTG-TCTAGGAAACAACAAAACAAAACAAAAAAT  1094
      || |||||||| ||||||| ||||||       || |||||  | |||||
seq2  CTAACACAGAG-AACCCTGTTCTAGG-------AACACAAACAACAAAAT  1082

seq1  AAAGAAAGGAGATACAG-CACAGGAAATAGCCTTTTGGAGATTTCATGAT  1143
          | |||| |||| | |||||||| | ||   ||||||| ||||||| 
seq2  ----AGAGGAAATACCGCCACAGGAATTGGC---TTGGAGA-TTCATGA-  1123

seq1  TTCTATACACAGCTTGATTATGCCCCAAGAACCTTATATTTGATATG  1190
      |||||||||| || ||| |||||||  || ||||||   ||||||||
seq2  TTCTATACAC-GC-TGA-TATGCCC--AG-ACCTTAATATTGATATG  1164

seq1: chr2_69702449_69703565
seq2: B6Ng01-080C04.g_69_1176 (reverse)

seq1  CATCTCCAGCCCCTTTTGTTTGATTGGGGGAAAAAATTGTGTTTTCTTAA  50
      ||||| |||||| ||||||||||| |||   ||||||| || ||||||||
seq2  CATCTTCAGCCCATTTTGTTTGATAGGG---AAAAATT-TGGTTTCTTAA  46

seq1  TAATTGCAAAAGCAGTGAT-AAGATAATTTGCTGTTTAATGCTTGGAACA  99
        ||||||||||||||||| ||| |||||||||| ||||||||||||   
seq2  ATATTGCAAAAGCAGTGATAAAGTTAATTTGCTG-TTAATGCTTGGA--C  93

seq1  ATAGCAAATTTGTT-ATAGAAAAGAATAATGTTCCTCCCACAGCCTGCAG  148
      |||||||||||||| ||||||||| |||||| |||| |||||| ||||||
seq2  ATAGCAAATTTGTTAATAGAAAAG-ATAATG-TCCT-CCACAG-CTGCAG  139

seq1  CCTCACATCTCTCCCTCTTGAGATATTCAAGGTTAAAAGCCTTTTCATAC  198
      |||||| ||||||||||||||||  |||||||||||||||||||||||||
seq2  CCTCACCTCTCTCCCTCTTGAGAATTTCAAGGTTAAAAGCCTTTTCATAC  189

seq1  TCCATGTTCAAAATACATTTTATTTTTAGTGTACTTTATGTGTATGGATG  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCATGTTCAAAATACA-TTTATTTTTAGTGTACTTTATGTGTATGGATG  238

seq1  TTATGTCTACATGTATGGCTGTGTGCCGTGTACATGCCTGG-TGCCCTCA  297
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTATGTCTACATGTATGGCTGTGTGCCGTGTACATGCCTGGTTGCCCTCA  288

seq1  GAAGCCAGAAGTGTGCACTGGCTCCCCTAGGACTGGAATAACAGATGGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGAAGTGTGCACTGGCTCCCCTAGGACTGGAATAACAGATGGTT  338

seq1  ATAAGGCCCTATGGAAGTGCTGGGAATTGAATCTGGTTCACCATTCAGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCCCTATGGAAGTGCTGGGAATTGAATCTGGTTCACCATTCAGTG  388

seq1  CTCTTAACCTCTGAGTCATCTCTCCAGCTCCTAAATATTTTTTTTTAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACCTCTGAGTCATCTCTCCAGCTCCTAAATATTTTTTTTTAAAG  438

seq1  GAGGCCCAATTTTTTTATTTTTTTAAAGAATATAAAGTTCAAGTAAAATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCAATTTTTTTATTTTTTTAAAGAATATAAAGTTCAAGTAAAATT  488

seq1  ACTCAGAGACAAGATTTCCTAAACATCCCCAACCAGGATGGCCTATAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGACAAGATTTCCTAAACATCCCCAACCAGGATGGCCTATAAAC  538

seq1  TTAATTTTTATTTTTTCCTTTTCCCCCACCAAACATGAGATGTTTTTAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTATTTTTTCCTTTTCCCCCACCAAACATGAGATGTTTTTAGA  588

seq1  GAGTAAAGTTTTGTTTCACCAACAATATATAATTAATAATCATCTTCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGTTTTGTTTCACCAACAATATATAATTAATAATCATCTTCTCT  638

seq1  AAAGTATAGATTTTTAAAATATGAGTTCTACGATATTCTTTATGTAAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATAGATTTTTAAAATATGAGTTCTACGATATTCTTTATGTAAAAA  688

seq1  TTGTAGTAAACAGGTCTACTGCTTGCCTTCTCCCTCTCGTTCCTCTCCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTAAACAGGTCTACTGCTTGCCTTCTCCCTCTCGTTCCTCTCCTC  738

seq1  CCTCCTTTTTCTCTTTTACTTTTTTCCTTCCTTTTATCCATCCATTCATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTTTCTCTTTTACTTTTTTCCTTCCTTTTATCCATCCATTCATC  788

seq1  TTATGCATCCAGGGCTGTCCTGGGGAAAATTCACAAACTCATAGAGGTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATCCAGGGCTGTCCTGGGGAAAATTCACAAACTCATAGAGGTAG  838

seq1  ATCACCTTGCTTCTGCTTCCCATGTGTGAGAATTAAAGAGCATGAGCCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTGCTTCTGCTTCCCATGTGTGAGAATTAAAGAGCATGAGCCAT  888

seq1  CACATCTACCTTATTTTAAAAAATAGTGTGTGTCTGTGTCTGTCTGCATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTACCTTATTTTAAAAAATAGTGTGTGTCTGTGTCTGTCTGCATA  938

seq1  TCAATATTTGGCCCTCAGAGGTGTCATCCTCTGGAGCTGTAGTTACAGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTGGCCCTCAGAGGTGTCATCCTCTGGAGCTGTAGTTACAGTC  988

seq1  TCTTATGAGCCAACTGACAAGAGTCCTAGAACCTACCTCAGGTCTTCTGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGAGCCAACTGACAAGAGTCCTAGAACCTACCTCAGGTCTTCTGG  1038

seq1  AAGAGCAGCAGCATTCTTAGGCATTGAGCCATCCTCTAGCTCTCCTGCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGCAGCATTCTTAGGCATTGAGCCATCCTCTAGCTCTCCTGCTG  1088

seq1  ATTTCTTTAAGATGGAATTC  1117
      ||||||||||||||||||||
seq2  ATTTCTTTAAGATGGAATTC  1108