BAC Information

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BAC

Clone NameB6Ng01-080D09
Chromosome2 (Build37)
Map Location 80,957,303 - 81,112,055
singlet/doubletdoublet
Overlap genenone
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080D09.bB6Ng01-080D09.g
ACCDH895412DH895413
length1,1611,092
definitionDH895412|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D09, 5' end.DH895413|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,957,303 - 80,958,476)(81,110,951 - 81,112,055)
sequence
gaattcaagatcaactagagatatattattgagtttgaagttggcttaag
caacatactgagatactgtaccaaaaaaataaattatgaacttaggactc
atactttgcatacaatattagtttcagtatttattagttatatttatact
tcctaaagttactttcctatctctgcaatagaaatgacaatattactctt
aaagactgccatagcatgcgctctctctctctctctctctctctctctct
ctctctctttccctccctgtatctgtctggctccctatctacctctgtct
ctctgtatttctctgcttctatctctctcagagaaagacacacacacaca
cacacagatggagacagagagacagagatagagacagagacagacagcga
gagagaatgtgtttctttctgtctcctgtatataggcattgcctagaata
aatcaactatgaaaatattggcaatctcttttattgtaattgtttttcat
ataaatgttttcacaacaacaatgatcattattgagcattaatagtcata
agaacagtaacagcaaagtctagcttgagggcagagtagcagggagaagc
agggacttatcctttttgtgttttccctcatgtaaccctccttgtataat
gtgttgtattatttagattataactgaaatagagaaacaaatgctcattt
ataattcatttctatacttgaaataaaactaacatattacattatcactt
aagtaaaaaaacatttatctgtaattatcaagtaaaagattgttccctgt
tccaggaattttgtgactaagtgagcacaaaaaaacctaaatatctcttt
atactcgatgttgtactgctcctaggatgattcccggaggagttgtcaca
gtgtctttcctgcaataacatgacacagttgcataaatctgttctaatta
tttggtttgacggcaagaagaaactagtaataggaaacgtgtatctaggc
aggcatttgcttcattttcctcactcattcacattctcattgctcttata
agcccgttgactgtacagttcacatggagggcgggggagagatccctcac
atgtagaagaatagggaattaatttgttcttaatgtgtgtttccaccaaa
ctcgtgttgaa
gaattctgcatttattagctctgaggactcagagggtagataaccgggta
caggaagttgacagggtagaatattagttcataatgcttaatatagtttt
gatgattgcagttcttgctagaaagtttggctctaactcaatactatgca
gtctatatacaaatggtatttcttaatggagagagtattctaatccatca
tgtgacttcactaataaaacgactgtacctaaggggaaaagaaacagcac
tattatggccactgtacttaaaaagccactgtcatatttcaaagaaatgc
gctacaagtctagaaactgtagatagtagcagttagaatctagaataagc
aacattttacttgtgtgtttctagttccagataggttgcatatgtatgaa
gcttatggattttaatttaaggcaatggtgctatctaaataaattataca
ttctaattaatcacattctgcaaaaaaagaaagttatgcatttaaaaacc
tgacactgttacaaaggggaaaaaaaacagagtggaatttttaccaatct
cctactgaagttttcactgatatttattttagtcttagcttcaaactttg
cttcaaggtctgtgtagaattaaacacttttccaggatcaacaaattcaa
ccacagtgaaatgtccagagattttggacaggtattcaaaacataagtat
taatacaaatattgactttatattttgttgaacatctagatttattatct
ctcagggcaaatattgactgtatcttccaggtcgataaatctctatgttc
actggaacaaaagtcaatacctggatcatatccatgttcccagatgataa
ctgcttctattcatgttacaccatttagtctttcagaacttcatgtctat
tatatggaaagaaaacatttaataaaaatgttaatttggtgcataagagc
ataaaatttgttgaagttgcatgaaaataaccctagtttatgaagatact
aagcttcatgtaaaccgttgtatgcatatattccaggggaaaatctgttg
atgactagtaatgggattgggattgtaaattattctctggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80957303_80958476
seq2: B6Ng01-080D09.b_47_1207

seq1  GAATTCAAGATCAACTAGAGATATATTATTGAGTTTGAAGTTGGCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATCAACTAGAGATATATTATTGAGTTTGAAGTTGGCTTAAG  50

seq1  CAACATACTGAGATACTGTACCAAAAAAATAAATTATGAACTTAGGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATACTGAGATACTGTACCAAAAAAATAAATTATGAACTTAGGACTC  100

seq1  ATACTTTGCATACAATATTAGTTTCAGTATTTATTAGTTATATTTATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGCATACAATATTAGTTTCAGTATTTATTAGTTATATTTATACT  150

seq1  TCCTAAAGTTACTTTCCTATCTCTGCAATAGAAATGACAATATTACTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGTTACTTTCCTATCTCTGCAATAGAAATGACAATATTACTCTT  200

seq1  AAAGACTGCCATAGCATGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  250
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  AAAGACTGCCATAGCATGCG--CTCTCTCTCTCTCTCTCTCTCTCTCTCT  248

seq1  CTCTCTCTCTTTCCCTCCCTGTATCTGTCTGGCTCCCTATCTACCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTTTCCCTCCCTGTATCTGTCTGGCTCCCTATCTACCTCTGT  298

seq1  CTCTCTGTATTTCTCTGCTTCTATCTCTCTCAGAGAAAGACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTATTTCTCTGCTTCTATCTCTCTCAGAGAAAGACACACACACA  348

seq1  CACACACAGATGGAGACAGAGAGACAGAGATAGAGACAGAGACAGACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGATGGAGACAGAGAGACAGAGATAGAGACAGAGACAGACAGC  398

seq1  GAGAGAGAATGTGTTTCTTTCTGTCTCCTGTATATAGGCATTGCCTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAATGTGTTTCTTTCTGTCTCCTGTATATAGGCATTGCCTAGAA  448

seq1  TAAATCAACTATGAAAATATTGGCAATCTCTTTTATTGTAATTGTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAACTATGAAAATATTGGCAATCTCTTTTATTGTAATTGTTTTTC  498

seq1  ATATAAATGTTTTCACAACAACAATGATCATTATTGAGCATTAATAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATGTTTTCACAACAACAATGATCATTATTGAGCATTAATAGTCA  548

seq1  TAAGAACAGTAACAGCAAAGTCTAGCTTGAGGGCAGAGTAGCAGGGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACAGTAACAGCAAAGTCTAGCTTGAGGGCAGAGTAGCAGGGAGAA  598

seq1  GCAGGGACTTATCCTTTTTGTGTTTTCCCTCATGTAACCCTCCTTGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACTTATCCTTTTTGTGTTTTCCCTCATGTAACCCTCCTTGTATA  648

seq1  ATGTGTTGTATTATTTAGATTATAACTGAAATAGAGAAACAAATGCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTGTATTATTTAGATTATAACTGAAATAGAGAAACAAATGCTCAT  698

seq1  TTATAATTCATTTCTATACTTGAAATAAAACTAACATATTACATTATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTCATTTCTATACTTGAAATAAAACTAACATATTACATTATCAC  748

seq1  TTAAGTAAAAAAACATTTATCTGTAATTATCAAGTAAAAGATTGTTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAAAAAAACATTTATCTGTAATTATCAAGTAAAAGATTGTTCCCT  798

seq1  GTTCCAGGAATTTTGTGACTAAGTGAGCACAAAAAAACCTAAATATCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGAATTTTGTGACTAAGTGAGCACAAAAAAACCTAAATATCTCT  848

seq1  TTATACTCGATGTTGTACTGCTCCTAGGATGATTCCGGAAGGAGTTGTCA  900
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  TTATACTCGATGTTGTACTGCTCCTAGGATGATTCCCGGAGGAGTTGTCA  898

seq1  CAGTGTCTTTCCTGCAATAAACATGACACAGTTGCATAAATCTGTTCTAA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGTGTCTTTCCTGCAAT-AACATGACACAGTTGCATAAATCTGTTCTAA  947

seq1  TTATTTTGGTTTGACGGCAAGAAGAAAACTAGTAATAGGAAAACGTGGTA  1000
      ||| |||||||||||||||||||| |||||||||||||| |||||| |||
seq2  TTA-TTTGGTTTGACGGCAAGAAG-AAACTAGTAATAGG-AAACGT-GTA  993

seq1  TCTAGGCAGGCAATTTGCTTCATTTTCCTCACTCATTCACATTCTCATTG  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCAGGC-ATTTGCTTCATTTTCCTCACTCATTCACATTCTCATTG  1042

seq1  CTCTTTATAAAGCCCGTTGACTGTACAGTTCACATGGA-GGCGGGGAGAA  1099
      ||| |||| ||||||||||||||||||||||||||||| |||||||   |
seq2  CTC-TTAT-AAGCCCGTTGACTGTACAGTTCACATGGAGGGCGGGGGAGA  1090

seq1  GATTCCCTCACATGGTAAGAGAATAGGGGAATAATATTGTCTTAATGTGT  1149
      || |||||||||| |||  ||||||||| | |||| |  |||||||||| 
seq2  GA-TCCCTCACAT-GTAGAAGAATAGGGAATTAATTTGTTCTTAATGTG-  1137

seq1  TGTCTCCACCAAAACTCGTGTTGAA  1174
      ||| |||||| ||||||||||||||
seq2  TGTTTCCACC-AAACTCGTGTTGAA  1161

seq1: chr2_81110951_81112055
seq2: B6Ng01-080D09.g_72_1163 (reverse)

seq1  TACCAGAGAATTAATTTTACCATTCCCCATCCCATTTACTAGTCATCAAC  50
      |||||||||| ||||||   || |||| |||||| |||||||||||||||
seq2  TACCAGAGAA-TAATTT--ACAATCCCAATCCCA-TTACTAGTCATCAAC  46

seq1  AGATTTTTCCCCCTGGGAAAATAATTATGCATACAACGTTTTACAATGAA  100
      |||||||  |||||||   ||||  ||||||||||||| ||||| ||| |
seq2  AGATTTT--CCCCTGG---AATA--TATGCATACAACGGTTTAC-ATG-A  87

seq1  AGCTTAGGTATCTTCCATTAAACTAGGGTTATTTTCATGCAACTTCAACA  150
      |||||| ||||||||   ||||||||||||||||||||||||||||||||
seq2  AGCTTA-GTATCTTC--ATAAACTAGGGTTATTTTCATGCAACTTCAACA  134

seq1  AATTTTATGCTCTTATGCACC-AATTAACATTTTTATT-AATGTTTTCTT  198
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  AATTTTATGCTCTTATGCACCAAATTAACATTTTTATTAAATGTTTTCTT  184

seq1  TCCATATAATAGACATG-AGTTCTGAAAGACTAAATGGTGTAACATGAAT  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCATATAATAGACATGAAGTTCTGAAAGACTAAATGGTGTAACATGAAT  234

seq1  AGAAGCAGTTATCATCTGGGAACATGGATATGATCCAGGTATTGACTTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGTTATCATCTGGGAACATGGATATGATCCAGGTATTGACTTTT  284

seq1  GTTCCAGTGAACATAGAGATTTATCGACCTGGAAGATACAGTCAATATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGTGAACATAGAGATTTATCGACCTGGAAGATACAGTCAATATTT  334

seq1  GCCCTGAGAGATAATAAATCTAGATGTTCAACAAAATATAAAGTCAATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGAGATAATAAATCTAGATGTTCAACAAAATATAAAGTCAATAT  384

seq1  TTGTATTAATACTTATGTTTTGAATACCTGTCCAAAATCTCTGGACATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAATACTTATGTTTTGAATACCTGTCCAAAATCTCTGGACATTT  434

seq1  CACTGTGGTTGAATTTGTTGATCCTGGAAAAGTGTTTAATTCTACACAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGTTGAATTTGTTGATCCTGGAAAAGTGTTTAATTCTACACAGA  484

seq1  CCTTGAAGCAAAGTTTGAAGCTAAGACTAAAATAAATATCAGTGAAAACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGCAAAGTTTGAAGCTAAGACTAAAATAAATATCAGTGAAAACT  534

seq1  TCAGTAGGAGATTGGTAAAAATTCCACTCTGTTTTTTTTCCCCTTTGTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGGAGATTGGTAAAAATTCCACTCTGTTTTTTTTCCCCTTTGTAA  584

seq1  CAGTGTCAGGTTTTTAAATGCATAACTTTCTTTTTTTGCAGAATGTGATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCAGGTTTTTAAATGCATAACTTTCTTTTTTTGCAGAATGTGATT  634

seq1  AATTAGAATGTATAATTTATTTAGATAGCACCATTGCCTTAAATTAAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAATGTATAATTTATTTAGATAGCACCATTGCCTTAAATTAAAAT  684

seq1  CCATAAGCTTCATACATATGCAACCTATCTGGAACTAGAAACACACAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGCTTCATACATATGCAACCTATCTGGAACTAGAAACACACAAGT  734

seq1  AAAATGTTGCTTATTCTAGATTCTAACTGCTACTATCTACAGTTTCTAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTGCTTATTCTAGATTCTAACTGCTACTATCTACAGTTTCTAGA  784

seq1  CTTGTAGCGCATTTCTTTGAAATATGACAGTGGCTTTTTAAGTACAGTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGCGCATTTCTTTGAAATATGACAGTGGCTTTTTAAGTACAGTGG  834

seq1  CCATAATAGTGCTGTTTCTTTTCCCCTTAGGTACAGTCGTTTTATTAGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATAGTGCTGTTTCTTTTCCCCTTAGGTACAGTCGTTTTATTAGTG  884

seq1  AAGTCACATGATGGATTAGAATACTCTCTCCATTAAGAAATACCATTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACATGATGGATTAGAATACTCTCTCCATTAAGAAATACCATTTGT  934

seq1  ATATAGACTGCATAGTATTGAGTTAGAGCCAAACTTTCTAGCAAGAACTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACTGCATAGTATTGAGTTAGAGCCAAACTTTCTAGCAAGAACTG  984

seq1  CAATCATCAAAACTATATTAAGCATTATGAACTAATATTCTACCCTGTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCAAAACTATATTAAGCATTATGAACTAATATTCTACCCTGTCA  1034

seq1  ACTTCCTGTACCCGGTTATCTACCCTCTGAGTCCTCAGAGCTAATAAATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGTACCCGGTTATCTACCCTCTGAGTCCTCAGAGCTAATAAATG  1084

seq1  CAGAATTC  1105
      ||||||||
seq2  CAGAATTC  1092