BAC Information

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BAC

Clone NameB6Ng01-080F01
Chromosome2 (Build37)
Map Location 112,107,720 - 112,108,842
singlet/doubletsinglet
Overlap geneSlc12a6
Upstream geneOlfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3
Downstream geneTmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080F01.bB6Ng01-080F01.g
ACCDH895488DH895489
length1,2021,113
definitionDH895488|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F01, 5' end.DH895489|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaacggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggagaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgtaggaga
tcccttagggcgcctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaagaacgcagatcca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggagaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccattgtaaatttactaatgcgtttgcgat
tgtacgagggatagttatatcatgttaggcgtatttacaaccttgttatt
gtttcatgtgaacatgagatattatttgtgtcaagttgacaaggggtgga
ttgtagtggctattcctggttgtcaacttgacatatttggaatgaactac
aattcggaattggaagctcaccagtgacccttatttgagctgagatctta
tctgatctggtttgaagatcttgagcatatgctatgaatcagaagaatga
atctccgagtaggaaccacactttatctggcagcttcacctgataagtga
tgaaccgtatcgtaccttctggacattaggacctgagaaagagattacca
tc
gaattcactcaaggaagtggtactctcttgaaagaatggaactttcgaga
gggacttctcgtgcatgattcccacataatttccctgctgagctttagat
aactattttgtatattgtatattgagttttgtagtcagaacctatagaag
ccacttctgttcgtattaaccactttccagacttgaccttgagctgacga
gcctgacttgaattagaagttttcctttgatttagtgggaagaggtgatg
caaggaggaaagttactttttccagactcagttaaaaaacttgagaactg
ccacttagttttatgcctcattcggaccagcataagtctttttttttatt
atttaagtttttcccttaagaatcttaaagacttttaaaaattctattct
acacaagtttgaaaacatggctttagacagtgacttgttaaagcaaggct
atcttaccatttccggtctcaggaaatagtgttcctcctgaccttaagtg
ttccggaagccagaatagttttagttcctcaaatttgcttgtttttaatg
tcttgagaaagatagacttggtaaagcttatagttccaaaattaactaat
ctttagcgagtcatgtttcttttatggcagtagtatgagttaattcctag
tctgactgctttctgttgcttaataaaccttacactggattatatacact
atgttaaagtatgagataaaagatcataacttccttttctaccatattta
tttatctatatatatatatatatatatattttgtgacaggatctcaagta
gctcagctgaccttgagttttctatatggtcaaggatgagcttgaccctg
gctctacctcccaagtgttgggattgaaggcctttttcaacacacccagt
tttgtgggatgctgtggatggaactcaaggcaggcactctgtcaactgag
ctacattccaagccagcacaattacttccaattattgatctaatctttaa
ttcatcacatacattgaattgttaaatgcccattaaacaaatacagaagt
ggaatgctcacagccattcatttgacgaagcccaaggttcccaatgagga
gcttaagaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_112107720_112108842
seq2: B6Ng01-080F01.g_67_1179

seq1  GAATTCACTCAAGGAAGTGGTACTCTCTTGAAAGAATGGAACTTTCGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAAGGAAGTGGTACTCTCTTGAAAGAATGGAACTTTCGAGA  50

seq1  GGGACTTCTCGTGCATGATTCCCACATAATTTCCCTGCTGAGCTTTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTCTCGTGCATGATTCCCACATAATTTCCCTGCTGAGCTTTAGAT  100

seq1  AACTATTTTGTATATTGTATATTGAGTTTTGTAGTCAGAACCTATAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTGTATATTGTATATTGAGTTTTGTAGTCAGAACCTATAGAAG  150

seq1  CCACTTCTGTTCGTATTAACCACTTTCCAGACTTGACCTTGAGCTGACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTGTTCGTATTAACCACTTTCCAGACTTGACCTTGAGCTGACGA  200

seq1  GCCTGACTTGAATTAGAAGTTTTCCTTTGATTTAGTGGGAAGAGGTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACTTGAATTAGAAGTTTTCCTTTGATTTAGTGGGAAGAGGTGATG  250

seq1  CAAGGAGGAAAGTTACTTTTTCCAGACTCAGTTAAAAAACTTGAGAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGAAAGTTACTTTTTCCAGACTCAGTTAAAAAACTTGAGAACTG  300

seq1  CCACTTAGTTTTATGCCTCATTCGGACCAGCATAAGTCTTTTTTTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAGTTTTATGCCTCATTCGGACCAGCATAAGTCTTTTTTTTTATT  350

seq1  ATTTAAGTTTTTCCCTTAAGAATCTTAAAGACTTTTAAAAATTCTATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTTTTTCCCTTAAGAATCTTAAAGACTTTTAAAAATTCTATTCT  400

seq1  ACACAAGTTTGAAAACATGGCTTTAGACAGTGACTTGTTAAAGCAAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTTTGAAAACATGGCTTTAGACAGTGACTTGTTAAAGCAAGGCT  450

seq1  ATCTTACCATTTCCGGTCTCAGGAAATAGTGTTCCTCCTGACCTTAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACCATTTCCGGTCTCAGGAAATAGTGTTCCTCCTGACCTTAAGTG  500

seq1  TTCCGGAAGCCAGAATAGTTTTAGTTCCTCAAATTTGCTTGTTTTTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGAAGCCAGAATAGTTTTAGTTCCTCAAATTTGCTTGTTTTTAATG  550

seq1  TCTTGAGAAAGATAGACTTGGTAAAGCTTATAGTTCCAAAATTAACTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGAAAGATAGACTTGGTAAAGCTTATAGTTCCAAAATTAACTAAT  600

seq1  CTTTAGCGAGTCATGTTTCTTTTATGGCAGTAGTATGAGTTAATTCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCGAGTCATGTTTCTTTTATGGCAGTAGTATGAGTTAATTCCTAG  650

seq1  TCTGACTGCTTTCTGTTGCTTAATAAACCTTACACTGGATTATATACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGCTTTCTGTTGCTTAATAAACCTTACACTGGATTATATACACT  700

seq1  ATGTTAAAGTATGAGATAAAAGATCATAACTTCCTTTTCTACCATATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAGTATGAGATAAAAGATCATAACTTCCTTTTCTACCATATTTA  750

seq1  TTTATCTATATATATATATATATATATATTTTGTGACAGGATCTCAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATATATATATATATATATATATTTTGTGACAGGATCTCAAGTA  800

seq1  GCTCAGGCTGACCTTGAGTTTTCTATATGGTCAAGGATGAGCTTGACCCT  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCA-GCTGACCTTGAGTTTTCTATATGGTCAAGGATGAGCTTGACCCT  849

seq1  GGCTCTACCTCCCAAGTGTTGGGATTGAAGGCCTTTTTCAACCACACCCA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCTCTACCTCCCAAGTGTTGGGATTGAAGGCCTTTTTCAA-CACACCCA  898

seq1  GTTTTGTGGGATGCTGTGGATGGAACTCAAGGCAGGCACTCTGTCAACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGGGATGCTGTGGATGGAACTCAAGGCAGGCACTCTGTCAACTG  948

seq1  AGCTACATCCCAAGCCAGCACCAAATTACTTCCAAATTATGATCTTAATC  1000
      |||||||| ||||||||||||  |||||||||||| |  ||||| |||||
seq2  AGCTACATTCCAAGCCAGCAC--AATTACTTCCAATTATTGATC-TAATC  995

seq1  TTTAATTCATCACATTACATTTGAATTGTTAAAAAATGCCCATTAAACAA  1050
      |||||||||||||| |||| ||||||||||   |||||||||||||||||
seq2  TTTAATTCATCACA-TACA-TTGAATTGTT---AAATGCCCATTAAACAA  1040

seq1  ATACAGAAGTGG-ATGCTCACAGCCATCCATTGGACGAAGCACAGGGTCC  1099
      |||||||||||| |||||||||||||| |||| |||||||| || ||| |
seq2  ATACAGAAGTGGAATGCTCACAGCCATTCATTTGACGAAGCCCAAGGTTC  1090

seq1  CCAATGAAGGAGCTAGAGAAAGTA  1123
      |||||| |||||||  ||||||||
seq2  CCAATG-AGGAGCTTAAGAAAGTA  1113