BAC Information

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BAC

Clone NameB6Ng01-080F18
Chromosome2 (Build37)
Map Location 129,715,418 - 129,859,874
singlet/doubletdoublet
Overlap geneTgm3
Upstream gene1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35
Downstream geneAU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080F18.bB6Ng01-080F18.g
ACCDH895521DH895522
length1,056231
definitionDH895521|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F18, 5' end.DH895522|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,715,418 - 129,716,006)(129,859,644 - 129,859,874)
sequence
gaattccttagtgttttgagagaacatttagcactgtatcccagatgttc
tgaatcagacctggccattaaaagttttatggtgttgactctggatgttt
ggaaaagccacatggaaacctattttacatacacacataccctttcataa
atagatttaattggagttacccaatgtaagcgcctcccacaaaccagagg
ttgtcaaatagaaagcccagtgccaggtgtggagcacctcccctttagtt
gttgttaggagtcggggcctcctcagagatccccaaagcaattcaggtaa
ttgctgctgctgttggtatgagctggatagtgaacccctgtagccgaaga
caccatacactttggtcataagtgatggaaaagtcaacctggcactgact
tggaagcttcttccttagtggctagacctaccagtgctggaaggtgatat
acaggctccgagtgagaaaagtcttaacagtcttttgcagctgtgaaccc
tgtgagctataataatgcctggtatgtaggcttagattttaaaaacttag
ttttaataaggattctcaaatgctttgactcctccccccacttctatccc
actgtccaaaggaaggggagaaaggatggtaaataggacaagggatgtgg
atctgtttagaagtagttccttggggacaatttcaatcttcatttgtcag
gataccagcagttcagttcagtagtgtcaggataccaaacactaatcagc
agccactacaacacaatccagcagaaactgccaggcctccgcagaatttg
gcatgagtcaatcagggagtgaccagggccagccgggatgccaggagaag
ttctctgctgcgcctctcttaacaaagcaaaggtcagtgacgttgaagac
ttgagaccaattaactgttaaagctagctatgcaattacacagtcactga
ctgttgagtcctatctatactctctccaaacatcatgtgtcctcccacgg
atctgctcagcatcagcaaataccacatgatctgtcttagcaaacactat
gtgagt
aaaggcagagctctgtataagaagacagaggatgggtcactgaagaagaa
tagggaccaacaggtcttctttgaacactccactccctaggtagggcagg
gcagagcagggcaaggcagggcaaggcagggcagggctgggcaattctca
tctgcctcctaccttgaagctctgcaaaatctacagatagtgtcctgtgt
gcgatgagagagaggagagggggagggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129715418_129716006
seq2: B6Ng01-080F18.b_41_629

seq1  GAATTCCTTAGTGTTTTGAGAGAACATTTAGCACTGTATCCCAGATGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTGTTTTGAGAGAACATTTAGCACTGTATCCCAGATGTTC  50

seq1  TGAATCAGACCTGGCCATTAAAAGTTTTATGGTGTTGACTCTGGATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGACCTGGCCATTAAAAGTTTTATGGTGTTGACTCTGGATGTTT  100

seq1  GGAAAAGCCACATGGAAACCTATTTTACATACACACATACCCTTTCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCCACATGGAAACCTATTTTACATACACACATACCCTTTCATAA  150

seq1  ATAGATTTAATTGGAGTTACCCAATGTAAGCGCCTCCCACAAACCAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTAATTGGAGTTACCCAATGTAAGCGCCTCCCACAAACCAGAGG  200

seq1  TTGTCAAATAGAAAGCCCAGTGCCAGGTGTGGAGCACCTCCCCTTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAATAGAAAGCCCAGTGCCAGGTGTGGAGCACCTCCCCTTTAGTT  250

seq1  GTTGTTAGGAGTCGGGGCCTCCTCAGAGATCCCCAAAGCAATTCAGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAGGAGTCGGGGCCTCCTCAGAGATCCCCAAAGCAATTCAGGTAA  300

seq1  TTGCTGCTGCTGTTGGTATGAGCTGGATAGTGAACCCCTGTAGCCGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTGCTGTTGGTATGAGCTGGATAGTGAACCCCTGTAGCCGAAGA  350

seq1  CACCATACACTTTGGTCATAAGTGATGGAAAAGTCAACCTGGCACTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATACACTTTGGTCATAAGTGATGGAAAAGTCAACCTGGCACTGACT  400

seq1  TGGAAGCTTCTTCCTTAGTGGCTAGACCTACCAGTGCTGGAAGGTGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTTCTTCCTTAGTGGCTAGACCTACCAGTGCTGGAAGGTGATAT  450

seq1  ACAGGCTCCGAGTGAGAAAAGTCTTAACAGTCTTTTGCAGCTGTGAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCCGAGTGAGAAAAGTCTTAACAGTCTTTTGCAGCTGTGAACCC  500

seq1  TGTGAGCTATAATAATGCCTGGTATGTAGGCTTAGATTTTAAAAACTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTATAATAATGCCTGGTATGTAGGCTTAGATTTTAAAAACTTAG  550

seq1  TTTTAATAAGGATTCTCAAATGCTTTGACTCCTCCCCCC  589
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAAGGATTCTCAAATGCTTTGACTCCTCCCCCC  589

seq1: chr2_129859644_129859874
seq2: B6Ng01-080F18.g_74_304 (reverse)

seq1  CTCCCCCTCCCCCTCTCCTCTCTCTCATCGCACACAGGACACTATCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCCCCCTCTCCTCTCTCTCATCGCACACAGGACACTATCTGTA  50

seq1  GATTTTGCAGAGCTTCAAGGTAGGAGGCAGATGAGAATTGCCCAGCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGCAGAGCTTCAAGGTAGGAGGCAGATGAGAATTGCCCAGCCCTG  100

seq1  CCCTGCCTTGCCCTGCCTTGCCCTGCTCTGCCCTGCCCTACCTAGGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTTGCCCTGCCTTGCCCTGCTCTGCCCTGCCCTACCTAGGGAGT  150

seq1  GGAGTGTTCAAAGAAGACCTGTTGGTCCCTATTCTTCTTCAGTGACCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTCAAAGAAGACCTGTTGGTCCCTATTCTTCTTCAGTGACCCAT  200

seq1  CCTCTGTCTTCTTATACAGAGCTCTGCCTTT  231
      |||||||||||||||||||||||||||||||
seq2  CCTCTGTCTTCTTATACAGAGCTCTGCCTTT  231