BAC Information

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BAC

Clone NameB6Ng01-080H07
Chromosome2 (Build37)
Map Location 149,963,992 - 149,965,205
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048, C530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120
Downstream geneEG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080H07.bB6Ng01-080H07.g
ACCDH895589DH895590
length1,0561,170
definitionDH895589|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H07, 5' end.DH895590|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagctgaggaatattaaatgactgagaagcacctaaagaaatg
ttcaatatccttagtcatcagagaaatacaaatcaaaacaaccctgagat
tccacctcacaacagttaaaatggctaagatcaaaatctcaggtgacagc
agatgctgacaaggatatggagaaagaggaacactcctccattgctggtg
gaattacaagtgtacaaccactctggaaatcaatttggcagttcctcaga
aaattcgaaatcgtactacctgaggacccagcactaccactcttgggcat
atactcagaagatgctccaagatataacaaggacacatgttccactatgt
tcataagcagccttatttataatagccagaagctggaaagaacccagatg
tccttaaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcacctattaaaaacaatgaattcaataaattcattcttttt
tattagatattttcttcattacatttcaaatgccatccccagagccccct
ataccctcccccggccctgctccctaacccacccactcccgctccctggt
cctggcattcccctgtactggggcatacgatcttcacaagaccaagggcg
gctcttctcactgatggtcgactaggccatcctctgctacatatgcaact
agagaaaaagctctgggggggggggtactagttagttcatattgttgttc
catctatagggttgcagacccctttagtttcttgggtactttctcaagct
ccttcattaggggccctgtgttccatccaataaattgaaagatcctgaca
gaatgttaaaaggtcacagaaaccctgaaattggtaaatagattccattg
ttagtagaagtagcttcactgatttagaaaatagaggtgcacttgctctg
gccactccttgaacccgtgtgtctgccaatgttttgaccattccttgaac
ccatttgtgtgcccactgatgaagcccatgtccaggtgttgttgtatatt
ggttgt
gaattcagaaatcttgcttaactctgttatgtagctgggtaggagtgtgc
tggggggacacagagtagttgcaagcagtggaatgtttctattgaggctt
actgggctatcctagtaggtatttggaagactctgctgctgagagtgact
tgtactgtgcagacctggcccaagatgtttcagtgaagaagaacttcagt
atctggcctagagactgtttttggtgaagaagatgggtgctttatgccct
tgtctgaagagtctacctgagactaaggtaaagagatttatattagttgt
attgacaaaagaagtctttaaaaaaaatctcagcagagaccttgttctct
tgttttgtcttatgaagagtgttttaatgaaaaggagcaagcaggaagga
agagctacatccaagaaaagaggttcccattttccaactttattagaata
tgtgtgttaatttgtactagaagtcattattcttctttctaagtggttca
aggaagattaaaaaaaatagttgctatcagcacattcaaataggatgtca
aggggctggagaagggtctcggtggttaagagtacaggctgctcttttag
aggtcccagatttgaggcccagtatccacaggacacacatccatgtgtga
ctccagttccatggtgatcaatcccacttttctggcctctacaaagcatc
aggcatgcatgggacacatagatgtacatgcagtcaaaactgccatacac
aaaaaatattaaataaaacaaatcctttctctcaaagttgaattcatcaa
gctatttttatttctttctttattttttaaacaaccaaccgaatacataa
atatgtaagtaagtaagtaagtaaataaataaataaataaataaataaat
aagtgaatgggttggtgtcagagagtaagctggtggtagaaaaatatgtg
atttgtggctgtttatgcctttgaacatgttttcagaaggtgagtggaaa
ctgtgctgtagatgatagttgatgctgaagactgaagccatcttgttgaa
actgaatgcatgtgctagatcactgtgttttgttggtaccatgcaatgat
gaaatgtcattgagaaaatttaggaagataccgtaactactgtgacatgc
agttacatctctgtctgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_149963992_149965205
seq2: B6Ng01-080H07.g_66_1235

seq1  GAATTCAGAAATCTTGCTTAACTCTGTTATGTAGCTGGGTAGGAGTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTTGCTTAACTCTGTTATGTAGCTGGGTAGGAGTGTGC  50

seq1  TGGGGGGACACAGAGTAGTTGCAAGCAGTGGAATGTTTCTATTGAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGACACAGAGTAGTTGCAAGCAGTGGAATGTTTCTATTGAGGCTT  100

seq1  ACTGGGCTATCCTAGTAGGTATTTGGAAGACTCTGCTGCTGAGAGTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTATCCTAGTAGGTATTTGGAAGACTCTGCTGCTGAGAGTGACT  150

seq1  TGTACTGTGCAGACCTGGCCCAAGATGTTTCAGTGAAGAAGAACTTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTGCAGACCTGGCCCAAGATGTTTCAGTGAAGAAGAACTTCAGT  200

seq1  ATCTGGCCTAGAGACTGTTTTTGGTGAAGAAGATGGGTGCTTTATGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCCTAGAGACTGTTTTTGGTGAAGAAGATGGGTGCTTTATGCCCT  250

seq1  TGTCTGAAGAGTCTACCTGAGACTAAGGTAAAGAGATTTATATTAGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGAGTCTACCTGAGACTAAGGTAAAGAGATTTATATTAGTTGT  300

seq1  ATTGACAAAAGAAGTCTTTAAAAAAAATCTCAGCAGAGACCTTGTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAAAGAAGTCTTTAAAAAAAATCTCAGCAGAGACCTTGTTCTCT  350

seq1  TGTTTTGTCTTATGAAGAGTGTTTTAATGAAAAGGAGCAAGCAGGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTCTTATGAAGAGTGTTTTAATGAAAAGGAGCAAGCAGGAAGGA  400

seq1  AGAGCTACATCCAAGAAAAGAGGTTCCCATTTTCCAACTTTATTAGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTACATCCAAGAAAAGAGGTTCCCATTTTCCAACTTTATTAGAATA  450

seq1  TGTGTGTTAATTTGTACTAGAAGTCATTATTCTTCTTTCTAAGTGGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTAATTTGTACTAGAAGTCATTATTCTTCTTTCTAAGTGGTTCA  500

seq1  AGGAAGATTAAAAAAAATAGTTGCTATCAGCACATTCAAATAGGATGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATTAAAAAAAATAGTTGCTATCAGCACATTCAAATAGGATGTCA  550

seq1  AGGGGCTGGAGAAGGGTCTCGGTGGTTAAGAGTACAGGCTGCTCTTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGAGAAGGGTCTCGGTGGTTAAGAGTACAGGCTGCTCTTTTAG  600

seq1  AGGTCCCAGATTTGAGGCCCAGTATCCACAGGACACACATCCATGTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCAGATTTGAGGCCCAGTATCCACAGGACACACATCCATGTGTGA  650

seq1  CTCCAGTTCCATGGTGATCAATCCCACTTTTCTGGCCTCTACAAAGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTCCATGGTGATCAATCCCACTTTTCTGGCCTCTACAAAGCATC  700

seq1  AGGCATGCATGGGACACATAGATGTACATGCAGTCAAAACTGCCATACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCATGGGACACATAGATGTACATGCAGTCAAAACTGCCATACAC  750

seq1  AAAAAATATTAAATAAAACAAATCCTTTCTCTCAAAAGTTGAATTCATCA  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAAAATATTAAATAAAACAAATCCTTTCTCTC-AAAGTTGAATTCATCA  799

seq1  GGCTATTTTTATTTCTTTCTTTA-TTTTTAAACAACCAACCGAATACATA  849
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCTATTTTTATTTCTTTCTTTATTTTTTAAACAACCAACCGAATACATA  849

seq1  AATATGTAAGTAAGTAAGTAAGTAAATAAATAAATAAATAAATAAATAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTAAGTAAGTAAGTAAGTAAATAAATAAATAAATAAATAAATAAA  899

seq1  TAAGTGAATGGGTTGGTGTCAGAGGAGTAAGGCTGGTGGTAGGAAAAAAT  949
      ||||||||||||||||||||||| |||||| |||||||||||  ||||||
seq2  TAAGTGAATGGGTTGGTGTCAGA-GAGTAA-GCTGGTGGTAG--AAAAAT  945

seq1  AATGTGAATTTGTGGCTGTTTATGCCTTTGAACAATGTTTTCAGGAGAGG  999
       ||||| |||||||||||||||||||||||||| ||||||||   ||| |
seq2  -ATGTG-ATTTGTGGCTGTTTATGCCTTTGAAC-ATGTTTTC---AGAAG  989

seq1  GTGAAGGTGGAAAACTGTGCTGTAGATGATAGTGAATGCTGAAAGACTGA  1049
      ||||  |||| ||||||||||||||||||||||  |||||| ||||||  
seq2  GTGA--GTGG-AAACTGTGCTGTAGATGATAGTTGATGCTG-AAGACT--  1033

seq1  GAGGCCATTCTTGTTGAAAACTGAATGCATGGTGCTAGAATCACTGTGTC  1099
      || |||| |||||||| ||||||||||||| ||||||| |||||||||| 
seq2  GAAGCCA-TCTTGTTG-AAACTGAATGCAT-GTGCTAG-ATCACTGTGTT  1079

seq1  TGTTGGGTAAACATATGCACATGAATGAAAGTGTCCATGAAGGACAAAAA  1149
      |  | ||||     ||||| ||| |||||| ||||  |||      ||||
seq2  TTGTTGGTA---CCATGCA-ATG-ATGAAA-TGTCATTGA-----GAAAA  1118

seq1  TTAATGGGAAGAATTTACCCTGTAGCTACTGTGACATGCAGGTTTAACCT  1199
      ||  | ||||||   ||||  ||| ||||||||||||||||  |||    
seq2  TT--TAGGAAGA---TACC--GTAACTACTGTGACATGCAG--TTA---C  1156

seq1  ATCTCTTGTCTGTAT  1214
      ||||| |||||||||
seq2  ATCTC-TGTCTGTAT  1170