BAC Information

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BAC

Clone NameB6Ng01-080J22
Chromosome2 (Build37)
Map Location 74,798,046 - 74,905,154
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
Downstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080J22.bB6Ng01-080J22.g
ACCDH895705DH895706
length8761,189
definitionDH895705|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J22, 5' end.DH895706|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,798,046 - 74,798,922)(74,903,926 - 74,905,154)
sequence
gaattcctgcaggttcaaaatgagttcaagtgtttggcaacaaggctctt
tcccttttgatgtacactcaggaatttcgatgctgtgaatttcataacat
cagcctggctcccagagcctccttcagtacccctcccccactccgcacca
gatgggatccgagagggcaatagaagaggcctcaaatacccactctgtct
gtcttttgcctgtctgtccccatggtgtgctctggtctcatgaaagctac
attccgaaggattggtatcctgcaattaagagagatatggcatctgtggc
acccactttttcttttgcaatttctgagaaaccatagataaatttttatg
aaaaaaaaaaaacaacaaacaggatttgaaggaaaatctccttcttagct
atctatctccaggaacattcttgagatttaaagttgtgattacatgtgaa
aaactctgaccatactctgaattattaattaatattgatgtcccgtcaat
cagggcagtacatttatagttagctgtaaagtagagccaggcagcctaat
tggctctctggaagcaaggatgctcagacagagcatacaggcacatgtgc
cctccagacagtgttcatcccagtgaccctggatagcttgtcatcctagt
actagtctttaagaagtggaggaaggccaggcagtggtggtgtatgcctt
taatcccagcacttgggaggcagaggcaggcgaatttctgagttcaaggc
cagcctggactacagagtgagttccaggacagccagggctgcacagagaa
atgctgtctcgaaaaccaaaagaagaagaagaagacgacgaagaagaagg
aggaagaggaggaggaggaggaggag
gaattctcctgccacctaagtaggacattctcttctatctcaacaaagaa
aaaaaaaaacacccttgttctctgatatgcaaataagggacacacagagc
aaatggaggtgtctgccaggtaacgatggactgaacttgagatgaagctc
acacccaggagcacatgtgtgtggggagagcaggaaagaggctgctgccc
ctgctaggatcagcatcccggcattagtggctacattccaatatccctag
tatcagtcaagtgaccagtcaactggcacatgcacatactggttggtacc
caacttgccaagaataagcttgtaacttgagtcatagtactctcgtgttt
cctcagcactggggagactgaggcaggaggatggatggatggactcccag
gtgcagccagcctgggctacagagagagaccctgtctcaaacaaacaaga
ataagctggggtccacttcagtttgttttttataattcatatttgtattg
attaataaaattattttcatgaaaagaaatttgaataactagaaggaata
agctgagttcctttgtcttccaatgagacatgcgtgatgccaagtgaaaa
gatagaaatgcaaacactggtggattctggctcaggttactctacaagtg
tcttttgatgcccccatgtctaagaagctagaatatatatatatatatat
atatacctgagaagagtgccttggggttttaaagggtcagatctttggcc
ctacatcaaaagtgtaagaatttaatctatacttttgaagttttaagtca
aaatcaagcttataggtatcactttctgtgatacctagcttcagaatgac
atctttattaagcagtagccacccagtcttgaccaactacgctaagaatg
ggcccactctgtattttactccatgaataaacaattagactcatgaacca
tcaccaccaccacacaataatacaacaaacccagagatgtttaaccagtt
tagcatagtcatcagttgtcaatcgaatagaaaatctggcacaggacaca
gacacagagttcccatactgctaaaccttgtattgacagggagaagatta
cgctatgattatgacgggtccatttgtaatcatgagatctctgctgaaga
aataggctatgtgcacataacgagcatcttctgtctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74798046_74798922
seq2: B6Ng01-080J22.b_45_920

seq1  GAATTCCTGCAGGTTCAAAATGAGTTCAAGTGTGTGGCAACAAGGCTCTT  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCCTGCAGGTTCAAAATGAGTTCAAGTGTTTGGCAACAAGGCTCTT  50

seq1  TCCCTTTTGATGTACACTCAGGAATTTCGATGCTGTGAATTTCATAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTGATGTACACTCAGGAATTTCGATGCTGTGAATTTCATAACAT  100

seq1  CAGCCTGGCTCCCAGAGCCTCCTTCAGTACCCCTCCCCCACTCCGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGCTCCCAGAGCCTCCTTCAGTACCCCTCCCCCACTCCGCACCA  150

seq1  GATGGGATCCGAGAGGGCAATAGAAGAGGCCTCAAATACCCACTCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATCCGAGAGGGCAATAGAAGAGGCCTCAAATACCCACTCTGTCT  200

seq1  GTCTTTTGCCTGTCTGTCCCCATGGTGTGCTCTGGTCTCATGAAAGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGCCTGTCTGTCCCCATGGTGTGCTCTGGTCTCATGAAAGCTAC  250

seq1  ATTCCGAAGGATTGGTATCCTGCAATTAAGAGAGATATGGCATCTGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGAAGGATTGGTATCCTGCAATTAAGAGAGATATGGCATCTGTGGC  300

seq1  ACCCACTTTTTCTTTTGCAATTTCTGAGAAATCATAGATAAATTTTTATG  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCCACTTTTTCTTTTGCAATTTCTGAGAAACCATAGATAAATTTTTATG  350

seq1  AAAAAAAAAAAACAACAAACAGGATTTGAAGGAAAATCTCCTTCTTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACAACAAACAGGATTTGAAGGAAAATCTCCTTCTTAGCT  400

seq1  ATCTATCTCCAGGAACATTCTTGAGATTTAAAGTTGTGATTACATGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTCCAGGAACATTCTTGAGATTTAAAGTTGTGATTACATGTGAA  450

seq1  AAACTCTGACCATACTCTGAATTATTAATTAATATTGATGTCCCGTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGACCATACTCTGAATTATTAATTAATATTGATGTCCCGTCAAT  500

seq1  CAGGGCAGTACATTTATAGTTAGCTGTAAAGTAGAGCCAGGCAGCCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGTACATTTATAGTTAGCTGTAAAGTAGAGCCAGGCAGCCTAAT  550

seq1  TGGCTCTCTGGAAGCAAGGATGCTCAGACAGAGCATACAGGCACATGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTGGAAGCAAGGATGCTCAGACAGAGCATACAGGCACATGTGC  600

seq1  CCTCCAGACAGTGTTCATCCCAGTGACCCTGGATAGCTTGTCATCCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGACAGTGTTCATCCCAGTGACCCTGGATAGCTTGTCATCCTAGT  650

seq1  ACTAGTCTTTAAGAAGTGGAGGAAGGCCAGGCAGTGGTGGTGTATGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCTTTAAGAAGTGGAGGAAGGCCAGGCAGTGGTGGTGTATGCCTT  700

seq1  TAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCAAGGC  750

seq1  CAGCCTGGACTACAGAGTGAGTTCCAGGACAGCCAGGGCTGCACAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGACTACAGAGTGAGTTCCAGGACAGCCAGGGCTGCACAGAGAA  800

seq1  ATGCTGTCTCGAAAAACCAAAAGAAGAAGAAGAAGACGACGAAGAAGAAG  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCTCG-AAAACCAAAAGAAGAAGAAGAAGACGACGAAGAAGAAG  849

seq1  GAGGAAGAGGAGGAGGAGGAGGAGGAG  877
      |||||||||||||||||||||||||||
seq2  GAGGAAGAGGAGGAGGAGGAGGAGGAG  876

seq1: chr2_74903926_74905154
seq2: B6Ng01-080J22.g_70_1258 (reverse)

seq1  GACAGACAGAATGATGCCTGCTAGTGGCAACTGAGCTAATATCTTTTTCA  50
      ||||||||||| |||||  | || ||   ||  |||  || ||||   ||
seq2  GACAGACAGAA-GATGCTCGTTA-TGTGCACATAGCCTATTTCTTCAGCA  48

seq1  GGCAAGAAGATTTCTTTCCATATGATTTTACAAATGGACACCGTCATTAA  100
      |      |||| ||       ||||  |||||||||||| |||||||  |
seq2  G------AGATCTC-------ATGA--TTACAAATGGAC-CCGTCAT--A  80

seq1  CTCATTTAAGGCGTATATCTTCCCTCCCTGTCACATCCACAGTGTTTAGC  150
       ||||     ||||| |||||  |||||||||| ||  |||  |||||||
seq2  ATCAT----AGCGTA-ATCTT--CTCCCTGTCA-AT--ACAAGGTTTAGC  120

seq1  AGTTATGGGAAACTTCTGTGTCTGTGTCTTTGTTGCCAGATTTTTCTAAT  200
      || ||||||||   |||||||||||||| |   ||||||| ||||||| |
seq2  AG-TATGGGAA--CTCTGTGTCTGTGTCCT--GTGCCAGA-TTTTCTATT  164

seq1  CGATTTGACAAACTGATTGACTTATGCTTAAACTGGTTAAAACTATCTCT  250
      ||| ||||| |||||| |||| ||||| |||||||||||||   ||||||
seq2  CGA-TTGAC-AACTGA-TGAC-TATGC-TAAACTGGTTAAA--CATCTCT  207

seq1  GGGTTTGTTGTTATTATTGTTGTGGTGGTGGTGATGGTTCATGGAGTCTA  300
      |||||||||| |||||||| |||||||||||||||||||||| |||||||
seq2  GGGTTTGTTG-TATTATTG-TGTGGTGGTGGTGATGGTTCAT-GAGTCTA  254

seq1  ATTGTTTATTCATGGAGTAAAATACAGAGTGGGCCCATTCTTAGCGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTATTCATGGAGTAAAATACAGAGTGGGCCCATTCTTAGCGTAGT  304

seq1  TGGTCAAGACT-GGTGGCTACTGCTTAATAAAGATGTCA-TCTGAAGCTA  398
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  TGGTCAAGACTGGGTGGCTACTGCTTAATAAAGATGTCATTCTGAAGCTA  354

seq1  GGTATCACAGAAAGTGATACCTATAAGCTTGATTTTGACTTAAAACTTC-  447
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTATCACAGAAAGTGATACCTATAAGCTTGATTTTGACTTAAAACTTCA  404

seq1  AAAGTATAGATTAAATTCTTACACTTTTGATGTAGGGCC-AAGATCTGAC  496
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAGTATAGATTAAATTCTTACACTTTTGATGTAGGGCCAAAGATCTGAC  454

seq1  CCTT--AAAACCCAAGGCACTCTTCTCAGGTATATATATATATATATATA  544
      ||||  ||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAACCCCAAGGCACTCTTCTCAGGTATATATATATATATATATA  504

seq1  TATTCTAGCTTCTTAGACATGGGGGCATCAAAAGACACTTGTAGAGTAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGCTTCTTAGACATGGGGGCATCAAAAGACACTTGTAGAGTAAC  554

seq1  CTGAGCCAGAATCCACCAGTGTTTGCATTTCTATCTTTTCACTTGGCATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAGAATCCACCAGTGTTTGCATTTCTATCTTTTCACTTGGCATC  604

seq1  ACGCATGTCTCATTGGAAGACAAAGGAACTCAGCTTATTCCTTCTAGTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATGTCTCATTGGAAGACAAAGGAACTCAGCTTATTCCTTCTAGTTA  654

seq1  TTCAAATTTCTTTTCATGAAAATAATTTTATTAATCAATACAAATATGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTCTTTTCATGAAAATAATTTTATTAATCAATACAAATATGAA  704

seq1  TTATAAAAAACAAACTGAAGTGGACCCCAGCTTATTCTTGTTTGTTTGAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAAACAAACTGAAGTGGACCCCAGCTTATTCTTGTTTGTTTGAG  754

seq1  ACAGGGTCTCTCTCTGTAGCCCAGGCTGGCTGCACCTGGGAGTCCATCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTCTCTCTGTAGCCCAGGCTGGCTGCACCTGGGAGTCCATCCA  804

seq1  TCCATCCTCCTGCCTCAGTCTCCCCAGTGCTGAGGAAACACGAGAGTACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTCCTGCCTCAGTCTCCCCAGTGCTGAGGAAACACGAGAGTACT  854

seq1  ATGACTCAAGTTACAAGCTTATTCTTGGCAAGTTGGGTACCAACCAGTAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAAGTTACAAGCTTATTCTTGGCAAGTTGGGTACCAACCAGTAT  904

seq1  GTGCATGTGCCAGTTGACTGGTCACTTGACTGATACTAGGGATATTGGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGCCAGTTGACTGGTCACTTGACTGATACTAGGGATATTGGAA  954

seq1  TGTAGCCACTAATGCCGGGATGCTGATCCTAGCAGGGGCAGCAGCCTCTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCACTAATGCCGGGATGCTGATCCTAGCAGGGGCAGCAGCCTCTT  1004

seq1  TCCTGCTCTCCCCACACACATGTGCTCCTGGGTGTGAGCTTCATCTCAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCTCCCCACACACATGTGCTCCTGGGTGTGAGCTTCATCTCAAG  1054

seq1  TTCAGTCCATCGTTACCTGGCAGACACCTCCATTTGCTCTGTGTGTCCCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCATCGTTACCTGGCAGACACCTCCATTTGCTCTGTGTGTCCCT  1104

seq1  TATTTGCATATCAGAGAACAAGGGTGTTTTTTTTTTTCTTTGTTGAGATA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCATATCAGAGAACAAGGGTGTTTTTTTTTTTCTTTGTTGAGATA  1154

seq1  GAAGAGAATGTCCTACTTAGGTGGCAGGAGAATTC  1229
      |||||||||||||||||||||||||||||||||||
seq2  GAAGAGAATGTCCTACTTAGGTGGCAGGAGAATTC  1189