BAC Information

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BAC

Clone NameB6Ng01-080M19
Chromosome2 (Build37)
Map Location 126,575,426 - 126,694,515
singlet/doubletdoublet
Overlap geneUsp8, Usp50, Trpm7
Upstream gene3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, LOC100043714
Downstream gene2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080M19.bB6Ng01-080M19.g
ACCDH895832DH895833
length1,1111,100
definitionDH895832|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M19, 5' end.DH895833|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,693,399 - 126,694,515)(126,575,426 - 126,576,541)
sequence
gaattctaaattgtgaaaaacaggcatctaggacagtggttaccaggagt
agggtggtagtgtatcagaagaatagagactggaagccctttcccacctg
gtcttcatacaacaaatggaagaaagatgctctagaagagtctgtggggg
tagataagcaaggtaggtgctatatgaagggtcacatgctctgtgtggct
cagcaattttctggctttttccctcagctcactaacccattttctcagga
gtgctttccctttctgaaggaaaccgtctgaaaactgtctgttagttttg
gtctacttctttgctgtgaggcataagaacctaatacttagcaggagcct
ctagactcagagccacacttctaccattgggagagaagcaaggaataatg
gttaaagtgtttaaatttagtcataagagcaatacaaactgaaaacctag
ctgacatggtgataatactaatgttttgtacttgaaatctgctgaaagta
tatttggatgatatattaatcacaatcacttcagagtgtatagaaacatc
agattgtataccttgaagatacactatttttctactgttttgaaactgga
tctagcttgcaaccctgttagattggagttctctgtgtagcacagtcccc
agtcgtcctgcttccatcttcaaagtgctgggattataggcagcaccacc
aactccagataatgcatacagttcttatgagtcagttgcagatcagtaaa
gaagtggtcctcccactgagggccaaagacctcaaagtctatttgctcga
tggttgatcaaagaacagctgatgctgacttgttgataatttgaaacctt
ttttaaaatttttatttgattcattttatgtaatacatgttttgcctgca
tgtatgtgtgccatgtgtgagcagagatagttgcagatagaaaagggact
cagactcactaaatttggagttctagattgttgtgagtcaaagtgtaagt
gctggctattgactcgggttctctggaaggaacatccagtgcttgtaaca
aggagctatctatccagtacattggaggtttgaactttttatctttggtt
gagtcagaaga
gaattcaccttaccagggagagacctatttgaaagagtttttggaattag
taatattcaaatattactttactacagttcattaattcggcagtgttttg
aagctgtctcataaatcgcgctgtatcttttataaagagtacgtgaacag
aaagagcgtgtagagaaaacgggcggtttgctgcttcccatcctcccctt
cataggtaggggtcaggaagtcgagggagtggccaccagtcagggcacct
ttagtcaaaagtgcccagcagacacctccatggtgtccggcatggcttta
attttttgtttgtttgtttttttgttttcgtttttcgagacagggtttct
ctgtctagccctgacttcttggaactcactttgtagaccaggctggcctc
aaactcagaaatctgcctgcctttgccttctgagtgctgggattaaaggc
gtgcgccaccatgccctgctaacctttgcctcttttgagacctgtctgtg
gttagtatatacttttatttatgtataatttatttacaagagcataaata
tctgcctctttattttttaaatatctaatacctactacagtgtaaatact
gtacaaatatagtatttgaggaaatagttacaagaaaaatgtatgcacac
actcagttccccaccccacccctagcacccagccttctcaccgttccttc
tacctcaggaatcttcccatgtcccgtggtctgcatctctccccacctcg
tttccatagtttcttttttcctgaccgatgggttctttctgcttacccaa
agccacttaaatacactgtttgctatttagcagctgggatctacatatcc
gaaaacactacataatatcccttctagaattaatgtataatttatattta
tacatgatttatatatttaattctctacattcccggttgagttagagtta
ttcatgatgctatgtcttctgggtcacttggagagttgaaagagcttttc
ccattgggcagtagcgagctgctagacaagagaagctgagacccgtctca
gcaactcttggacagaactccaggagaatgggagcatgcatcatgggagg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126693399_126694515
seq2: B6Ng01-080M19.b_48_1158 (reverse)

seq1  TCTTCTTGGACTCAACCAAAGATAAAAAGTTCAAAACTCCAGATGGTACT  50
      ||||||  ||||||||||||||||||||||||||| ||||| || |||||
seq2  TCTTCT--GACTCAACCAAAGATAAAAAGTTCAAACCTCCA-AT-GTACT  46

seq1  GGATAGATAGCTCCTTGGTTACAAGCACTGGATGGTTCTTCCAGAGAACC  100
      |||||||||||||||| ||||||||||||||||| | |||||||||||||
seq2  GGATAGATAGCTCCTT-GTTACAAGCACTGGATGTTCCTTCCAGAGAACC  95

seq1  CGAGTTCAATAGCCAGCACTTACACTGTGACTCACAACAATCTAGAACTC  150
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  CGAG-TCAATAGCCAGCACTTACACTTTGACTCACAACAATCTAGAACTC  144

seq1  CAATTTTAGTGAGTCTGAGTCCCTTTTCTATCTGCAACTATCTCTGCTCA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAGTGAGTCTGAGTCCCTTTTCTATCTGCAACTATCTCTGCTCA  194

seq1  CACATGGCACACATACATGCAGGCAAAACATGTATTACATAAAATGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCACACATACATGCAGGCAAAACATGTATTACATAAAATGAATC  244

seq1  AAATAAAAATTTTAAAAAAGGTTTCAAATTATCAACAAGTCAGCATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATTTTAAAAAAGGTTTCAAATTATCAACAAGTCAGCATCAGC  294

seq1  TGTTCTTTGATCAACCATCGAGCAAATAGACTTTGAGGTCTTTGGCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTGATCAACCATCGAGCAAATAGACTTTGAGGTCTTTGGCCCTC  344

seq1  AGTGGGAGGACCACTTCTTTACTGATCTGCAACTGACTCATAAGAACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGGACCACTTCTTTACTGATCTGCAACTGACTCATAAGAACTGT  394

seq1  ATGCATTATCTGGAGTTGGTGGTGCTGCCTATAATCCCAGCACTTTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTATCTGGAGTTGGTGGTGCTGCCTATAATCCCAGCACTTTGAAG  444

seq1  ATGGAAGCAGGACGACTGGGGACTGTGCTACACAGAGAACTCCAATCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCAGGACGACTGGGGACTGTGCTACACAGAGAACTCCAATCTAA  494

seq1  CAGGGTTGCAAGCTAGATCCAGTTTCAAAACAGTAGAAAAATAGTGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGCAAGCTAGATCCAGTTTCAAAACAGTAGAAAAATAGTGTATC  544

seq1  TTCAAGGTATACAATCTGATGTTTCTATACACTCTGAAGTGATTGTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTATACAATCTGATGTTTCTATACACTCTGAAGTGATTGTGATT  594

seq1  AATATATCATCCAAATATACTTTCAGCAGATTTCAAGTACAAAACATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCATCCAAATATACTTTCAGCAGATTTCAAGTACAAAACATTAG  644

seq1  TATTATCACCATGTCAGCTAGGTTTTCAGTTTGTATTGCTCTTATGACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCACCATGTCAGCTAGGTTTTCAGTTTGTATTGCTCTTATGACTA  694

seq1  AATTTAAACACTTTAACCATTATTCCTTGCTTCTCTCCCAATGGTAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAACACTTTAACCATTATTCCTTGCTTCTCTCCCAATGGTAGAAG  744

seq1  TGTGGCTCTGAGTCTAGAGGCTCCTGCTAAGTATTAGGTTCTTATGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCTGAGTCTAGAGGCTCCTGCTAAGTATTAGGTTCTTATGCCTC  794

seq1  ACAGCAAAGAAGTAGACCAAAACTAACAGACAGTTTTCAGACGGTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAGAAGTAGACCAAAACTAACAGACAGTTTTCAGACGGTTTCCT  844

seq1  TCAGAAAGGGAAAGCACTCCTGAGAAAATGGGTTAGTGAGCTGAGGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGGGAAAGCACTCCTGAGAAAATGGGTTAGTGAGCTGAGGGAAA  894

seq1  AAGCCAGAAAATTGCTGAGCCACACAGAGCATGTGACCCTTCATATAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAAAATTGCTGAGCCACACAGAGCATGTGACCCTTCATATAGCA  944

seq1  CCTACCTTGCTTATCTACCCCCACAGACTCTTCTAGAGCATCTTTCTTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTTGCTTATCTACCCCCACAGACTCTTCTAGAGCATCTTTCTTCC  994

seq1  ATTTGTTGTATGAAGACCAGGTGGGAAAGGGCTTCCAGTCTCTATTCTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGTATGAAGACCAGGTGGGAAAGGGCTTCCAGTCTCTATTCTTC  1044

seq1  TGATACACTACCACCCTACTCCTGGTAACCACTGTCCTAGATGCCTGTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACTACCACCCTACTCCTGGTAACCACTGTCCTAGATGCCTGTTT  1094

seq1  TTCACAATTTAGAATTC  1117
      |||||||||||||||||
seq2  TTCACAATTTAGAATTC  1111

seq1: chr2_126575426_126576541
seq2: B6Ng01-080M19.g_68_1167

seq1  GAATTCACCTTACCAGGGAGAGACCTATTTGAAAGAGTTTTTGGAATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTACCAGGGAGAGACCTATTTGAAAGAGTTTTTGGAATTAG  50

seq1  TAATATTCAAATATTACTTTACTACAGTTCATTAATTCGGCAGTGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCAAATATTACTTTACTACAGTTCATTAATTCGGCAGTGTTTTG  100

seq1  AAGCTGTCTCATAAATCGCGCTGTATCTTTTATAAAGAGTACGTGAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCTCATAAATCGCGCTGTATCTTTTATAAAGAGTACGTGAACAG  150

seq1  AAAGAGCGTGTAGAGAAAACGGGCGGTTTGCTGCTTCCCATCCTCCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCGTGTAGAGAAAACGGGCGGTTTGCTGCTTCCCATCCTCCCCTT  200

seq1  CATAGGTAGGGGTCAGGAAGTCGAGGGAGTGGCCACCAGTCAGGGCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTAGGGGTCAGGAAGTCGAGGGAGTGGCCACCAGTCAGGGCACCT  250

seq1  TTAGTCAAAAGTGCCCAGCAGACACCTCCATGGTGTCCGGCATGGCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAAAAGTGCCCAGCAGACACCTCCATGGTGTCCGGCATGGCTTTA  300

seq1  ATTTTTTGTTTGTTTGTTTTTTTGTTTTCGTTTTTCGAGACAGGGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTTTGTTTGTTTTTTTGTTTTCGTTTTTCGAGACAGGGTTTCT  350

seq1  CTGTCTAGCCCTGACTTCTTGGAACTCACTTTGTAGACCAGGCTGGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAGCCCTGACTTCTTGGAACTCACTTTGTAGACCAGGCTGGCCTC  400

seq1  AAACTCAGAAATCTGCCTGCCTTTGCCTTCTGAGTGCTGGGATTAAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGAAATCTGCCTGCCTTTGCCTTCTGAGTGCTGGGATTAAAGGC  450

seq1  GTGCGCCACCATGCCCTGCTAACCTTTGCCTCTTTTGAGACCTGTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCACCATGCCCTGCTAACCTTTGCCTCTTTTGAGACCTGTCTGTG  500

seq1  GTTAGTATATACTTTTATTTATGTATAATTTATTTACAAGAGCATAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTATATACTTTTATTTATGTATAATTTATTTACAAGAGCATAAATA  550

seq1  TCTGCCTCTTTATTTTTTAAATATCTAATACCTACTACAGTGTAAATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTTTATTTTTTAAATATCTAATACCTACTACAGTGTAAATACT  600

seq1  GTACAAATATAGTATTTGAGGAAATAGTTACAAGAAAAATGTATGCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATATAGTATTTGAGGAAATAGTTACAAGAAAAATGTATGCACAC  650

seq1  ACTCAGTTCCCCACCCCACCCCTAGCACCCAGCCTTCTCACCGTTCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTCCCCACCCCACCCCTAGCACCCAGCCTTCTCACCGTTCCTTC  700

seq1  TACCTCAGGAATCTTCCCATGTCCCGTGGTCTGCATCTCTCCCCACCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGGAATCTTCCCATGTCCCGTGGTCTGCATCTCTCCCCACCTCG  750

seq1  TTTCCATAGTTTCTTTTTTCCTGACCGATGGGTTCTTTCTGCTTACCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAGTTTCTTTTTTCCTGACCGATGGGTTCTTTCTGCTTACCCAA  800

seq1  AGCCACTTAAATACACTGTTTGCTATTTAGCAGCTGGGATCTACATATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTAAATACACTGTTTGCTATTTAGCAGCTGGGATCTACATATCC  850

seq1  GAAAACACTACATAATAT-CCTTCTAGAATTAATGTATAATTTATATTTA  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAAACACTACATAATATCCCTTCTAGAATTAATGTATAATTTATATTTA  900

seq1  TACATGATTTTATAATATTTAATTCTCTAACATT-CCGGTTGAGTTAGAG  948
      ||||||| ||||| |||||||||||||| ||||| |||||||||||||||
seq2  TACATGA-TTTAT-ATATTTAATTCTCT-ACATTCCCGGTTGAGTTAGAG  947

seq1  TATTTCATGATGCTAATGTC-TCTGGGTCACTTGGAGAAGGTTGAAAGAG  997
      |  ||||||||||| ||||| |||||||||||||||||  ||||||||||
seq2  TTATTCATGATGCT-ATGTCTTCTGGGTCACTTGGAGA--GTTGAAAGAG  994

seq1  CTTTTTCCCATTGGGCAGTAGCCGAGCCTGTCTAGACAAGAGGAAGCTAG  1047
      | ||||||||||||||||||| |||| ||| |||||||||| |||||| |
seq2  C-TTTTCCCATTGGGCAGTAG-CGAG-CTG-CTAGACAAGA-GAAGCT-G  1038

seq1  AGGACCCGTCTCAGGCCACCTCTAGAACCAAGAACT-CAGGAGAAGTGGA  1096
      | ||||||||||||  || |||| | ||  |||||| ||||||||  |||
seq2  A-GACCCGTCTCAG--CAACTCTTGGAC--AGAACTCCAGGAGAATGGGA  1083

seq1  AGGCATGCATTCATGGGAGG  1116
        ||||||| ||||||||||
seq2  --GCATGCA-TCATGGGAGG  1100