BAC Information

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BAC

Clone NameB6Ng01-080O11
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,221 - 41,059,73741,336,665 - 41,337,756
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080O11.bB6Ng01-080O11.g
ACCDH895912DH895913
length9601,077
definitionDH895912|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O11, 5' end.DH895913|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,221 - 41,059,737)(41,336,665 - 41,337,756)
sequence
gaattctttgtttagctctgagccctattttttaatggggttatttgatt
ttctgtagtccaccttcttgagttcttcatatatatatattggatattag
tcccctatctgatttaggataggtaaagatcctttcccaatctgttggtg
gtctttttgtcttattgacagtgtcttttgccttatagaagctttgcagt
ttcatgaggtcccatttgtcaattcttgatcttacagcacaagccattgc
tgttctattcaggaattattcccctgtgaccatctcttcgaggcttttcc
cagctttctcctctataagtttcactgtctctggttttatgtggagatcc
ttgatccacttagattggaccttagtacaaggagataggaatggatcaat
ttgcattcttctacatgataaccaccagttgtgccagcaccatttgttga
aaatgctgtcttttttccactggatggctttagctcccttgtcaaagatc
aagtgaccataggtgtgtgggttcatctctggatcttcaattctattcca
ttggtctacttgtctgtcactataccaggaccatgcagtttttatcacaa
ttgctctgtagtaaagctttaggtcaggcatggtgattccaccagaggtt
cttttatccttgagaagagtttttgctatcctaggttttttagttactcc
agatgaatttgcagattgctctttttaattcattgaagaattgatttgga
attttgatggggattgcattgaatctgtagattgcttttggcaagatagc
cattttttacaatgttgatcctgccaatccataagcatgggagatctttc
catcttctgagatctttaatttctttcttcagagacttgaagttcttatc
atacagatctttcacttccttagttagagtcacgccaagatattttatat
tatttgtgac
gaattcatattggtataaagtacacaccatccaggtgcttttgaatacag
aactcaaatgtccataagatactctctatctcctaattaataatttcttt
gaagtagggatggaaactacaacagcaaagtgctttctttaacaatgccc
atttgttgagaaagaatgaattgatgcttaagattctgaccaataagaca
aaattctcagttgtccttttagagacagcttagaaactggagaattggct
ctgtgaacagaagcacttagtgcctttgcagcagttctggttccatttcc
agcaaccacatgatgactcactaccacccaaaattctcctttcaaggaat
caggcattatcttctgatctctagttgtcctgagcattaacatgacacac
atgcaaaattttaggcaagacactcatatggataaataaaaaagtaatag
ctcataaaagaaacattatatctttcattttctttgcataggttcttaga
taatttttcttgcttatatccttaaattcatctcaaaagtcctaattttt
aaaagcatgatccataataccaattttacaaaaccagtctaggttaaggg
tcttctagacttctactactatggtcaattaagccccaatttaatcatta
aactgcttttctaatccaaagtccccaaatacacatttttccaaacaaaa
gcatagtcaggcctataacatcaataccctagttcctggtatcaacttca
gttttagggtttcattgctgtgaagagacaacatgaccatggtaataaga
aaaacatttaattggtactgaattacagtttcagaggttcagtgcattat
catcaatggtgggaagcatggcagttttccaatcagattatggcactaga
agagccaaaagttttacatcatgatccaaagacagccagtggatggtctg
gatccccctggccaaatttgacatatatatgagctctcaagcatgctcac
agtgacacacttctctacagctatatatgcctcaaaatatcaaacaacac
attgaaatattttttccacccttacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059221_41059737
seq2: B6Ng01-080O11.b_51_572 (reverse)

seq1  AATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCAT  50
      || |||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  AACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAGCCAT  50

seq1  CCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGT  100

seq1  TGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACT  150
       |||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  GGTTATCATGTAGAAGAATGCAAATTGATCCATTCCTATCTCCTTGTACT  150

seq1  AAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACT  200
      |||||| ||||||||||||||||||| | ||||||||||||||||||| |
seq2  AAGGTCCAATCTAAGTGGATCAAGGATCTCCACATAAAACCAGAGACAGT  200

seq1  GAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAG  250
      ||||||||||||||||||||  ||||||||||| ||||| ||||||||||
seq2  GAAACTTATAGAGGAGAAAGCTGGGAAAAGCCTCGAAGAGATGGTCACAG  250

seq1  GGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGA  300
      ||||| |||||||| ||||||||||||||||||||||||||||||  |||
seq2  GGGAATAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGA  300

seq1  ATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGA  350
      || ||||||||||||||||||||||||||||||||||  |||||||||||
seq2  ATTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTATAAGGCAAAAGA  350

seq1  CACCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTA  399
      ||| |||||||||||||||||  |||||||||||||||||||||||||||
seq2  CACTGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTA  400

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCA----ATATATATCAAGA  445
      |||||||||||||||||||||||||||||||||    |||||||| ||||
seq2  CCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATATATGAAGA  450

seq1  ACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGG  495
      ||||||||||||||| | ||||||||||||||||||||||||||||| ||
seq2  ACTCAAGAAGGTGGACTACAGAAAATCAAATAACCCCATTAAAAAATAGG  500

seq1  GCTCAGAGCTAAACAAAGAATT  517
      ||||||||||||||||||||||
seq2  GCTCAGAGCTAAACAAAGAATT  522

seq1: chr2_41336665_41337756
seq2: B6Ng01-080O11.g_70_1146 (reverse)

seq1  GTGTAAAGGGTTGGAAAAATATTTTCCAATTGTTGTTGTTTGAATATGTT  50
      |||| |||||| | ||||||||||  ||||   ||||||||| |||| ||
seq2  GTGT-AAGGGTGGAAAAAATATTT--CAAT--GTGTTGTTTG-ATAT-TT  43

seq1  TGAGGGCATATAGCCTTGTTAGAGGAAGTGTGTCACTGTGGAGGCATGGC  100
      ||| ||||||||    || |||| ||||||||||||||||   |||||  
seq2  TGA-GGCATATATAGCTG-TAGA-GAAGTGTGTCACTGTG--AGCATG--  86

seq1  TTTGAGAGCTCATATATATGTTCAAATTTGGCCAGGGGGATCCAGACCAT  150
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTGAGAGCTCATATATATG-TCAAATTTGGCCAGGGGGATCCAGACCAT  135

seq1  CCACCTGGCTGTCTTTGGATCATGATGTAAAACTTTTGGCTCTTCTAGTG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCA-CTGGCTGTCTTTGGATCATGATGTAAAACTTTTGGCTCTTCTAGTG  184

seq1  CCAT-ATCTGATTGGAAAACTGCCATGCTTCCCACCATTGATGATAATGC  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCTGATTGGAAAACTGCCATGCTTCCCACCATTGATGATAATGC  234

seq1  ACTGAACCTCTGAAACTGTAATTCAGTACCAATTAAATGTTTTTCTTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCTCTGAAACTGTAATTCAGTACCAATTAAATGTTTTTCTTATT  284

seq1  ACCATGGTCATGTTGTCTCTTCACAGCAATGAAACCCTAAAACTGAAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTCATGTTGTCTCTTCACAGCAATGAAACCCTAAAACTGAAGTT  334

seq1  GATACCAGGAACTAGGGTATTGATGTTATAGGCCTGACTATGCTTTTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGGAACTAGGGTATTGATGTTATAGGCCTGACTATGCTTTTGTT  384

seq1  TGGAAAAATGTGTATTTGGGGACTTTGGATTAGAAAAGCAGTTTAATGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATGTGTATTTGGGGACTTTGGATTAGAAAAGCAGTTTAATGAT  434

seq1  TAAATTGGGGCTTAATTGACCATAGTAGTAGAAGTCTAGAAGACCCTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGGGGCTTAATTGACCATAGTAGTAGAAGTCTAGAAGACCCTTAA  484

seq1  CCTAGACTGGTTTTGTAAAATTGGTATTATGGATCATGCTTTTAAAAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACTGGTTTTGTAAAATTGGTATTATGGATCATGCTTTTAAAAATT  534

seq1  AGGACTTTTGAGATGAATTTAAGGATATAAGCAAGAAAAATTATCTAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTTGAGATGAATTTAAGGATATAAGCAAGAAAAATTATCTAAGA  584

seq1  ACCTATGCAAAGAAAATGAAAGATATAATGTTTCTTTTATGAGCTATTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGCAAAGAAAATGAAAGATATAATGTTTCTTTTATGAGCTATTAC  634

seq1  TTTTTTATTTATCCATATGAGTGTCTTGCCTAAAATTTTGCATGTGTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTATCCATATGAGTGTCTTGCCTAAAATTTTGCATGTGTGTC  684

seq1  ATGTTAATGCTCAGGACAACTAGAGATCAGAAGATAATGCCTGATTCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATGCTCAGGACAACTAGAGATCAGAAGATAATGCCTGATTCCTT  734

seq1  GAAAGGAGAATTTTGGGTGGTAGTGAGTCATCATGTGGTTGCTGGAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGAATTTTGGGTGGTAGTGAGTCATCATGTGGTTGCTGGAAATG  784

seq1  GAACCAGAACTGCTGCAAAGGCACTAAGTGCTTCTGTTCACAGAGCCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAACTGCTGCAAAGGCACTAAGTGCTTCTGTTCACAGAGCCAAT  834

seq1  TCTCCAGTTTCTAAGCTGTCTCTAAAAGGACAACTGAGAATTTTGTCTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTTTCTAAGCTGTCTCTAAAAGGACAACTGAGAATTTTGTCTTA  884

seq1  TTGGTCAGAATCTTAAGCATCAATTCATTCTTTCTCAACAAATGGGCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAGAATCTTAAGCATCAATTCATTCTTTCTCAACAAATGGGCATT  934

seq1  GTTAAAGAAAGCACTTTGCTGTTGTAGTTTCCATCCCTACTTCAAAGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAAAGCACTTTGCTGTTGTAGTTTCCATCCCTACTTCAAAGAAA  984

seq1  TTATTAATTAGGAGATAGAGAGTATCTTATGGACATTTGAGTTCTGTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTAGGAGATAGAGAGTATCTTATGGACATTTGAGTTCTGTATT  1034

seq1  CAAAAGCACCTGGATGGTGTGTACTTTATACCAATATGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCACCTGGATGGTGTGTACTTTATACCAATATGAATTC  1077