BAC Information

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BAC

Clone NameB6Ng01-080P08
Chromosome2 (Build37)
Map Location 69,053,281 - 69,215,703
singlet/doubletdoublet
Overlap geneG6pc2, Abcb11
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25
Downstream geneDhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080P08.bB6Ng01-080P08.g
ACCDH895948DH895949
length1,0971,149
definitionDH895948|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P08, 5' end.DH895949|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,214,602 - 69,215,703)(69,053,281 - 69,054,446)
sequence
gaattctctgcagaaagttttttcatattagaggaggacacattctttca
gcgacacacaagaggcttgaacagtggggtgaggaggatgacatggggca
gccattgttcagggggaaaggagggttatagcagacataagactcaccag
gaagagtagggcttcctggtcacagagaggcttgtgagaaataagaccag
cagaggaataagaaaaagggggctcttaagagggaagaggagggagctcc
ctcagtgtgacccctgcagtaggagagtgtgctagaagtatctgcaacac
ccactgacctgaagaagatcctaagatgagtcaatcccatcctcactggg
aaggaatagtttcatatgggagacctcgggccttactggtttccccttgc
tctattacccttagacattgtctttgtcaaatcatgggtctgccgggcta
ctgcttttcacccaacccagcacaaaaatgcacaaggtcccctgctttct
tggggctctacttttctgaaggtctccatacgttaaccgtgttagcctac
tttttaaaaaagtagaaacttcagtcacagtcctagctgtgtgtgaggga
agattactcattcttggaataccaatgttgttagttaaaccaagaaacag
gcaacactgctcccagacatcctgttgatgggtggtagataagtgggtaa
gggggaaacctgcagtgaaggagatctggcctggtagaagttgattcaaa
gcaagcctgggctacactgtgaaattcaaggtttgtctggactatgtcat
aagacctatctctctctctctctctctctctctcacacacacacacacac
acacacacagagagagagagagagagagagagagagagagagagaaacag
acgacgacgacagaccctcccttaaaaatgactgcaacaacaaaaactag
tatattatacttatcacacagctgcttagctaaaccgccataattgaatg
ttgggaaggttccaactgttccttattatgaagaattcctgggaagaaaa
atctggagtgatagctcctaggatcatcccgttggttctcttgtaaa
gaattcagtgacctaacaccttagcgccaccaagaaaaaaatgattagca
caagtccatgggcaactctcctagtaagaaacctgtgatccaagcaccgg
cttatggatgtgtaggtcatgatcatttctagggacgatttcataatgag
actaatggaaggggtccctgaaagctgtggcaagataatttataatagtg
tcattacggaatgccagtattcctgggatgtgagccagaatggcggtaaa
gtaattattttctaaaactcactagagcttaaaccctagagtctgaaata
aatccatttatactgcaaggtgacaccggagagttctcaaatgtgattta
ttttagaaaaggcagataagtttgttagaagggtaacggccatgaagaca
ttaaaggcctatttttgtttcctgccaaggtatgagcagcgctagccaaa
gctaaacttgtctaaatggtcttgaactgtagcaggcactataactcaga
aacaaatagttcattttataataagactataccttgtggtttttaaatat
tagctgtggcaaaacatcctggagaattctgcccaatggcttccacgttg
cattctaaaacaagcagagtttacttaaaacccagggaaagtttaaataa
accagaatgagaacattctggagagaacagaaagtaatcaattactagaa
ctaacatctaaacaggacaacaatacagggttttgagactggctacatta
gtgaagaaaacacacccacacagtcattatcagtaaggagatcattgcca
ccagccagtcatgctgggagagcagagtactgaagccgtctccaaggaaa
cagggaaagtagggatcctggggatagcagtccaggggatgcccgtgaac
ttcatgtgtacttaatttgcttggatcagaggtccattgatatctttgaa
agctgtgacctcaataaatgtgcataggaaccctataggtagaacaacat
tatgactaccagtaccccggagctcttgactctagctgcaaatgtatcaa
agatggtctatcgcatcactggaagagagcccattgactgctacttttat
tgcccagatacagggaacgccaggccaaaagtgggagtgtgtgtgggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_69214602_69215703
seq2: B6Ng01-080P08.b_46_1142 (reverse)

seq1  TTTACAA-AGAAACAACGGGATGTACCTAAGAGCTATCACTCAAGATTTT  49
      ||||||| |||| ||||||||||  |||| |||||||||||| |||||||
seq2  TTTACAAGAGAACCAACGGGATGATCCTAGGAGCTATCACTCCAGATTTT  50

seq1  TCTT-CCAAGAATTCTTCATAATAAAGAACAGTTAGAAACCTTCCAAACA  98
      |||| ||| |||||||||||||||| |||||||| | |||||||| ||||
seq2  TCTTCCCAGGAATTCTTCATAATAAGGAACAGTT-GGAACCTTCCCAACA  99

seq1  TTCAATTATGGC-GTTTAGCTAAGCAAGCCTGTGTGATAAGTATAATATA  147
      |||||||||||| |||||||||||||   |||||||||||||||||||| 
seq2  TTCAATTATGGCGGTTTAGCTAAGCA--GCTGTGTGATAAGTATAATAT-  146

seq1  ACTAGTTTTTGTTGTTGCAGTCATTTTTTAAGGGATGTGTCTGTCTGTCT  197
      ||||||||||||||||||||||| ||||||||||| | ||||||| ||| 
seq2  ACTAGTTTTTGTTGTTGCAGTCA-TTTTTAAGGGA-GGGTCTGTC-GTC-  192

seq1  GTCTGTCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTC-GTCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT  241

seq1  GTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGATA  291

seq1  GGTCTTATGACATAGTCCAGACAAACCTTGAA-TTCACAGTGTAGCCCAG  346
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGTCTTATGACATAGTCCAGACAAACCTTGAATTTCACAGTGTAGCCCAG  341

seq1  GCTTGCTTTGAATCAACTTCTACCAGGCCAGATCTCCTTCACTGCAGGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTTGAATCAACTTCTACCAGGCCAGATCTCCTTCACTGCAGGTT  391

seq1  TCCCCCTTACCCACTTATCTACCACCCATCAACAGGATGTCTGGGAGCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTACCCACTTATCTACCACCCATCAACAGGATGTCTGGGAGCAG  441

seq1  TGTTGCCTGTTTCTTGGTTTAACTAACAACATTGGTATTCCAAGAATGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTGTTTCTTGGTTTAACTAACAACATTGGTATTCCAAGAATGAG  491

seq1  TAATCTTCCCTCACACACAGCTAGGACTGTGACTGAAGTTTCTACTTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCCCTCACACACAGCTAGGACTGTGACTGAAGTTTCTACTTTTT  541

seq1  TAAAAAGTAGGCTAACACGGTTAACGTATGGAGACCTTCAGAAAAGTAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTAGGCTAACACGGTTAACGTATGGAGACCTTCAGAAAAGTAGA  591

seq1  GCCCCAAGAAAGCAGGGGACCTTGTGCATTTTTGTGCTGGGTTGGGTGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAGAAAGCAGGGGACCTTGTGCATTTTTGTGCTGGGTTGGGTGAA  641

seq1  AAGCAGTAGCCCGGCAGACCCATGATTTGACAAAGACAATGTCTAAGGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAGCCCGGCAGACCCATGATTTGACAAAGACAATGTCTAAGGGT  691

seq1  AATAGAGCAAGGGGAAACCAGTAAGGCCCGAGGTCTCCCATATGAAACTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGCAAGGGGAAACCAGTAAGGCCCGAGGTCTCCCATATGAAACTA  741

seq1  TTCCTTCCCAGTGAGGATGGGATTGACTCATCTTAGGATCTTCTTCAGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCAGTGAGGATGGGATTGACTCATCTTAGGATCTTCTTCAGGT  791

seq1  CAGTGGGTGTTGCAGATACTTCTAGCACACTCTCCTACTGCAGGGGTCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTGTTGCAGATACTTCTAGCACACTCTCCTACTGCAGGGGTCAC  841

seq1  ACTGAGGGAGCTCCCTCCTCTTCCCTCTTAAGAGCCCCCTTTTTCTTATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGGAGCTCCCTCCTCTTCCCTCTTAAGAGCCCCCTTTTTCTTATT  891

seq1  CCTCTGCTGGTCTTATTTCTCACAAGCCTCTCTGTGACCAGGAAGCCCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTGGTCTTATTTCTCACAAGCCTCTCTGTGACCAGGAAGCCCTA  941

seq1  CTCTTCCTGGTGAGTCTTATGTCTGCTATAACCCTCCTTTCCCCCTGAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTGGTGAGTCTTATGTCTGCTATAACCCTCCTTTCCCCCTGAAC  991

seq1  AATGGCTGCCCCATGTCATCCTCCTCACCCCACTGTTCAAGCCTCTTGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGCCCCATGTCATCCTCCTCACCCCACTGTTCAAGCCTCTTGTG  1041

seq1  TGTCGCTGAAAGAATGTGTCCTCCTCTAATATGAAAAAACTTTCTGCAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCTGAAAGAATGTGTCCTCCTCTAATATGAAAAAACTTTCTGCAGA  1091

seq1  GAATTC  1102
      ||||||
seq2  GAATTC  1097

seq1: chr2_69053281_69054446
seq2: B6Ng01-080P08.g_69_1217

seq1  GAATTCAGTGACCTAACACCTTAGCGCCACCAAGAAAAAAATGATTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGACCTAACACCTTAGCGCCACCAAGAAAAAAATGATTAGCA  50

seq1  CAAGTCCATGGGCAACTCTCCTAGTAAGAAACCTGTGATCCAAGCACCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCATGGGCAACTCTCCTAGTAAGAAACCTGTGATCCAAGCACCGG  100

seq1  CTTATGGATGTGTAGGTCATGATCATTTCTAGGGACGATTTCATAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGATGTGTAGGTCATGATCATTTCTAGGGACGATTTCATAATGAG  150

seq1  ACTAATGGAAGGGGTCCCTGAAAGCTGTGGCAAGATAATTTATAATAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGAAGGGGTCCCTGAAAGCTGTGGCAAGATAATTTATAATAGTG  200

seq1  TCATTACGGAATGCCAGTATTCCTGGGATGTGAGCCAGAATGGCGGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACGGAATGCCAGTATTCCTGGGATGTGAGCCAGAATGGCGGTAAA  250

seq1  GTAATTATTTTCTAAAACTCACTAGAGCTTAAACCCTAGAGTCTGAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATTTTCTAAAACTCACTAGAGCTTAAACCCTAGAGTCTGAAATA  300

seq1  AATCCATTTATACTGCAAGGTGACACCGGAGAGTTCTCAAATGTGATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTTATACTGCAAGGTGACACCGGAGAGTTCTCAAATGTGATTTA  350

seq1  TTTTAGAAAAGGCAGATAAGTTTGTTAGAAGGGTAACGGCCATGAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAAAGGCAGATAAGTTTGTTAGAAGGGTAACGGCCATGAAGACA  400

seq1  TTAAAGGCCTATTTTTGTTTCCTGCCAAGGTATGAGCAGCGCTAGCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCCTATTTTTGTTTCCTGCCAAGGTATGAGCAGCGCTAGCCAAA  450

seq1  GCTAAACTTGTCTAAATGGTCTTGAACTGTAGCAGGCACTATAACTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACTTGTCTAAATGGTCTTGAACTGTAGCAGGCACTATAACTCAGA  500

seq1  AACAAATAGTTCATTTTATAATAAGACTATACCTTGTGGTTTTTAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAGTTCATTTTATAATAAGACTATACCTTGTGGTTTTTAAATAT  550

seq1  TAGCTGTGGCAAAACATCCTGGAGAATTCTGCCCAATGGCTTCCACGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGGCAAAACATCCTGGAGAATTCTGCCCAATGGCTTCCACGTTG  600

seq1  CATTCTAAAACAAGCAGAGTTTACTTAAAACCCAGGGAAAGTTTAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAAAACAAGCAGAGTTTACTTAAAACCCAGGGAAAGTTTAAATAA  650

seq1  ACCAGAATGAGAACATTCTGGAGAGAACAGAAAGTAATCAATTACTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATGAGAACATTCTGGAGAGAACAGAAAGTAATCAATTACTAGAA  700

seq1  CTAACATCTAAACAGGACAACAATACAGGGTTTTGAGACTGGCTACATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATCTAAACAGGACAACAATACAGGGTTTTGAGACTGGCTACATTA  750

seq1  GTGAAGAAAACACACCCACACAGTCATTATCAGTAAGGAGATCATTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAAAACACACCCACACAGTCATTATCAGTAAGGAGATCATTGCCA  800

seq1  CCAGCCAGTCATGCTGGGAGAGCAGAGTACTGAAGCCGTCTCCAAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGTCATGCTGGGAGAGCAGAGTACTGAAGCCGTCTCCAAGGAAA  850

seq1  CAGGGAAAGTAGGGATCCTGGGGATAGCAGTCCAGGGGATGCCCGTGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAGTAGGGATCCTGGGGATAGCAGTCCAGGGGATGCCCGTGAAC  900

seq1  TTCATGTTGTACTTAATTTGCTTGGATCAGAGGTTCCATTGATAATCTTT  950
      |||||| |||||||||||||||||||||||||| ||||||||| ||||||
seq2  TTCATG-TGTACTTAATTTGCTTGGATCAGAGG-TCCATTGAT-ATCTTT  947

seq1  GAAAGCTGTGACCTTCAAATAAATGTGCATAGGAACCCTATAGGTAGAAC  1000
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  GAAAGCTGTGACCT--CAATAAATGTGCATAGGAACCCTATAGGTAGAAC  995

seq1  AACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATAT  1050
      ||||||||| ||| ||||||||||||||||||||||||||||||||| ||
seq2  AACATTATG-ACT-ACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAAAT  1043

seq1  GTATCAAAAGATGGTCTAATCGGCCATCACTGGAAAGAGAGGCCCATTGG  1100
      ||||| ||||||||||| ||||  ||||||||| |||||| ||||||| |
seq2  GTATC-AAAGATGGTCT-ATCG--CATCACTGG-AAGAGA-GCCCATT-G  1086

seq1  ACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAG  1150
      || ||| |  ||||| |||||   |||| ||||||||||||  | |||||
seq2  AC-TGCTACTTTTAT-TGCCCAGATACA-GGGAACGCCAGG--CCAAAAG  1131

seq1  TGGGA--GTGGGTGGGTA  1166
      |||||  ||| |||||||
seq2  TGGGAGTGTGTGTGGGTA  1149