BAC Information

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BAC

Clone NameB6Ng01-081F01
Chromosome2 (Build37)8 (Build37)
Map Location 142,776,519 - 142,777,69837,249,794 - 37,250,928
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081F01.bB6Ng01-081F01.g
ACCDH896206DH896207
length1,0491,148
definitionDH896206|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F01, 5' end.DH896207|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,519 - 142,777,698)(37,249,794 - 37,250,928)
sequence
ggaattctttgttcagttctgagccccattttttaatggggttatttgat
tttctgaagtccaccttcttgagttctttatatatgttggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttc
attaggtcccatttgtcaattctcgatcttacagcacaagccattgctgt
tctgttcaggaatttttcccctgtgcccatatcttcaaggcttttcccca
ctttctcctctataagtttcagtgtctctggttttatgtgaagttccttg
atccacttagatttgaccttagtacaaggagataagtatggatcgattcg
cattcttctacacgataacaaccagttgtgccagcaccaattgttgaaaa
tgctgtctttcttccactggatggttttagctcccttgtcgaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctgtctctataccagtaccatgcagtttttatcacaattg
ctctgtagtaaagctttaggtctggcatggtgattctgccagaagttctt
ttatccttgagaagactttttgctatcctaggttttttgttattccagac
aaatttgcaaattgctccttccaagcctgcatgccattctgcccctgagc
aatattccaaggtgtggtttggttttctgagattcgctctaaccattggg
atcagactgatcttgaagtcacagtgtagcccagttgactcataaacttg
agacctttcttggccttttcgagattacagacacgtgcccccaaatcctg
ctttaaaatgtttaaaagatgctttcctgtgttctttgtttaaattaaca
aagctcacggatttttatcaaatgacttgctaagtgatgaaaatgggagt
gtaagttcacccggtctctcttagcaactgcagtcatttgttgatacta
gaattcagacattaataaggccagagacataaaccaggcccctctgagac
tggggtgggggagatctcttctttcagaaaggagtggctcacaccagtct
gggattcttacaccccaaatattaaaccttgcactttggtttgttatagt
tactgatgtctttaaaaaaaatcagaaatatatttaatatacaccttgca
cctaatgtgggttctagtaaattctcccatggcctggaatcactttcatc
agattgcgggtcctcctacttggagctcagcagttttcccacggtagagg
gatgggagatgtgactgtggattctagaatcgtctctgggacgtagccca
ggtgcatactcagcctgtggtttgggtggggcagagaaatgaggcatcaa
ttgccgcgagttgggcaatgtacagacaggcaaatactgaaagtcaagtc
cccaaggaatgcagagccgcagccagaataaacattgcaaaactgggtca
gcaactcaggggcccaaacagaacactaaggtaaagagtccaaatgggtt
agcaaaacaacgaagggaatggctgagcgatgctctccacaaggagccag
agacagctctctgaggtcagctgactgcatttagaactaatatagatcca
gagtaatgtcagccccacctatgacccacaggatctccctagatccacct
gatagagcgctcccaggaggaccagagcttgcatttctaaggtagaatgt
tccattgtcactgtggacaaaagtgactgcagctatggctgggtccagtg
tcccgggtcaggcagtcactgaagaaatcgtgatctgagaaggatgttct
agggtcagtggctctcagcttccctaataccgtgaccctttgatacagtt
cctcatgttgtggtgacccccaaccataaaactattttcattgctacttc
ataactataattttgctactgtatgcatcatatggtacataaatattctg
atatgaatatctgaatatgtaggaacatctaagtttgcccccccatgaaa
ggatatgccgaacccatagtgctggtgcgacaatatgtttttcaaaagga
ataagatacgaaagaaggaaaggttacgagtctacattaaagactccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776519_142777698
seq2: B6Ng01-081F01.b_49_768 (reverse)

seq1  GAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGC  50
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GAAGGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGC  50

seq1  AAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTG  100
      ||||||||||||||||||||||||||| |||||  ||||||||||||| |
seq2  AAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGCAGAATCACCATGCCAG  100

seq1  ACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  150

seq1  TATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAAT  200

seq1  GAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCA  250

seq1  TCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGG  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGG  300

seq1  TTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTAC  350
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTAC  350

seq1  TAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACAC  400

seq1  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACA  450

seq1  GGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAG  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAG  500

seq1  AATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAG  550

seq1  ACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTT  600

seq1  ACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACT  650

seq1  CAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCT  700

seq1  CACAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTG  750
      || ||            ||| |||||    |||                 
seq2  CAGAA----------CTGAACAAAGA----ATTC----------------  720

seq1  GCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTAT  800
                                                        
seq2  --------------------------------------------------  720

seq1  CTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAA  850
                                                        
seq2  --------------------------------------------------  720

seq1  CCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGA  900
                                                        
seq2  --------------------------------------------------  720

seq1  TATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTG  950
                                                        
seq2  --------------------------------------------------  720

seq1  TAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGC  1000
                                                        
seq2  --------------------------------------------------  720

seq1  AAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGA  1050
                                                        
seq2  --------------------------------------------------  720

seq1  AAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATAT  1100
                                                        
seq2  --------------------------------------------------  720

seq1  ATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAA  1150
                                                        
seq2  --------------------------------------------------  720

seq1  AAATGGGGCTCAGAACTGAACAAAGAATTC  1180
                                    
seq2  ------------------------------  720

seq1: chr8_37249794_37250928
seq2: B6Ng01-081F01.g_67_1214

seq1  GAATTCAGACATTAATAAGGCCAGAGACATAAACCAGGCCCCTCTGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACATTAATAAGGCCAGAGACATAAACCAGGCCCCTCTGAGAC  50

seq1  TGGGGTGGGGGAGATCTCTTCTTTCAGAAAGGAGTGGCTCACACCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGGGGAGATCTCTTCTTTCAGAAAGGAGTGGCTCACACCAGTCT  100

seq1  GGGATTCTTACACCCCAAATATTAAACCTTGCACTTTGGTTTGTTATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCTTACACCCCAAATATTAAACCTTGCACTTTGGTTTGTTATAGT  150

seq1  TACTGATGTCTTTAAAAAAAATCAGAAATATATTTAATATACACCTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATGTCTTTAAAAAAAATCAGAAATATATTTAATATACACCTTGCA  200

seq1  CCTAATGTGGGTTCTAGTAAATTCTCCCATGGCCTGGAATCACTTTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGTGGGTTCTAGTAAATTCTCCCATGGCCTGGAATCACTTTCATC  250

seq1  AGATTGCGGGTCCTCCTACTTGGAGCTCAGCAGTTTTCCCACGGTAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCGGGTCCTCCTACTTGGAGCTCAGCAGTTTTCCCACGGTAGAGG  300

seq1  GATGGGAGATGTGACTGTGGATTCTAGAATCGTCTCTGGGACGTAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGATGTGACTGTGGATTCTAGAATCGTCTCTGGGACGTAGCCCA  350

seq1  GGTGCATACTCAGCCTGTGGTTTGGGTGGGGCAGAGAAATGAGGCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATACTCAGCCTGTGGTTTGGGTGGGGCAGAGAAATGAGGCATCAA  400

seq1  TTGCCGCGAGTTGGGCAATGTACAGACAGGCAAATACTGAAAGTCAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGCGAGTTGGGCAATGTACAGACAGGCAAATACTGAAAGTCAAGTC  450

seq1  CCCAAGGAATGCAGAGCCGCAGCCAGAATAAACATTGCAAAACTGGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGAATGCAGAGCCGCAGCCAGAATAAACATTGCAAAACTGGGTCA  500

seq1  GCAACTCAGGGGCCCAAACAGAACACTAAGGTAAAGAGTCCAAATGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCAGGGGCCCAAACAGAACACTAAGGTAAAGAGTCCAAATGGGTT  550

seq1  AGCAAAACAACGAAGGGAATGGCTGAGCGATGCTCTCCACAAGGAGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACAACGAAGGGAATGGCTGAGCGATGCTCTCCACAAGGAGCCAG  600

seq1  AGACAGCTCTCTGAGGTCAGCTGACTGCATTTAGAACTAATATAGATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTCTCTGAGGTCAGCTGACTGCATTTAGAACTAATATAGATCCA  650

seq1  GAGTAATGTCAGCCCCACCTATGACCCACAGGATCTCCCTAGATCCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATGTCAGCCCCACCTATGACCCACAGGATCTCCCTAGATCCACCT  700

seq1  GATAGAGCGCTCCCAGGAGGACCAGAGCTTGCATTTCTAAGGTAGAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGCGCTCCCAGGAGGACCAGAGCTTGCATTTCTAAGGTAGAATGT  750

seq1  TCCATTGTCACTGTGGACAAAAGTGACTGCAGCTATGGCTGGGTCCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTCACTGTGGACAAAAGTGACTGCAGCTATGGCTGGGTCCAGTG  800

seq1  TCCCGGGTCAGGCAGTCACTGAAGAAATCGTGATCTGAGAAGGATGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGGTCAGGCAGTCACTGAAGAAATCGTGATCTGAGAAGGATGTTCT  850

seq1  A-GGTCAGTGGCTCTCAGCTTCCCTAATACCGTGACCCTTTGATACAGTT  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAGTGGCTCTCAGCTTCCCTAATACCGTGACCCTTTGATACAGTT  900

seq1  CCTCATGTTGTGGTGACCCCCAACCATAAAACTATTTTCATTGCTACTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTTGTGGTGACCCCCAACCATAAAACTATTTTCATTGCTACTTC  950

seq1  ATAACTATAATTTTGCTACTGTTATGCATCATAATGTACATAAATA-TCT  998
      ||||||||||||||||||||| |||||||||||  ||||||||||| |||
seq2  ATAACTATAATTTTGCTACTG-TATGCATCATATGGTACATAAATATTCT  999

seq1  GATATGAATATCTG-ATATGTAGG-ACATCT-AGTATGCCACCCC-TGAA  1044
      |||||||||||||| ||||||||| |||||| ||| |||| |||| ||||
seq2  GATATGAATATCTGAATATGTAGGAACATCTAAGTTTGCCCCCCCATGAA  1049

seq1  GGGAT-TGC--GACCCATAGGTTGCTGGTGC----AGATAGTTTTC-AGA  1086
       |||| |||   ||||||||  |||||||||    | ||  ||||| | |
seq2  AGGATATGCCGAACCCATAG--TGCTGGTGCGACAATATGTTTTTCAAAA  1097

seq1  GGATAAAGATA-GAAGGA--GAAAGGTTACAGAGTCTACATAAAGGACTC  1133
      |||  |||||| ||| ||  |||||||||| |||||||||| || |||||
seq2  GGAATAAGATACGAAAGAAGGAAAGGTTAC-GAGTCTACATTAAAGACTC  1146

seq1  CG  1135
      ||
seq2  CG  1148