BAC Information

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BAC

Clone NameB6Ng01-082D11
Chromosome2 (Build37)
Map Location 75,008,920 - 75,009,891
singlet/doubletsinglet
Overlap geneA330043C09Rik
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
Downstream geneLOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082D11.g
ACCDH896839
length957
definitionDH896839|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaaaagcataagaaatctaaaaagtagatttccttggaatgta
ttgaaatgtaagttgaaaggtaacttgccaaagtggcagctctttgataa
cattactggaattgtctttctgactgaatcagtaatacaatattcttttt
aattaaaggaagccactgtcctgacattaaatcccacacaaatattctgg
ttatttaatagtaatttattgtagttttactggaaactttaccctcttag
ttcttaagaggttttccaggctcaattaccaccttttcttctaatattga
ttttactgtattcattttagattaaaaattttttaaacttagaactcaaa
ttttagctggatttaaaggaaatatcccatttaaaaattcaggctgataa
gaagaccttccttgccacctgaagaatgagaccctatttattttattggg
gttctttgtgctcagtccgggtcatataagctttttggatacagaattct
tggcaaaatgtgaagcaggcatagatgatattgttttccagtacttcttg
agagtgggtagctgtggttatttttaatcacactgcagagactgtgtgta
gtctatttatccttctactttaccatagttgatgcatctcttaactgatt
gccctgcccagaatctgtgttaatttcttaggacacattgcccgtatgga
gacctctgaggtggcccctgtgtgttgtgagacattctcctgagaacgat
gggctgcagtctgagctgtgacaaatcttgaccattcgatgggctgtgac
agttcctggagtcaccatttatattatagttaccgtcctaatagcccgac
ttttgtgatacgtgtgactttaaattggaacacagaatctcacaaagcca
ttctgtgagttcctgacgatcccgttgtatgtttctgttatctttgatgt
agctttc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75008920_75009891
seq2: B6Ng01-082D11.g_68_1024

seq1  GAATTCTTAAAAGCATAAGAAATCTAAAAAGTAGATTTCCTTGGAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAAGCATAAGAAATCTAAAAAGTAGATTTCCTTGGAATGTA  50

seq1  TTGAAATGTAAGTTGAAAGGTAACTTGCCAAAGTGGCAGCTCTTTGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTAAGTTGAAAGGTAACTTGCCAAAGTGGCAGCTCTTTGATAA  100

seq1  CATTACTGGAATTGTCTTTCTGACTGAATCAGTAATACAATATTCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGGAATTGTCTTTCTGACTGAATCAGTAATACAATATTCTTTTT  150

seq1  AATTAAAGGAAGCCACTGTCCTGACATTAAATCCCACACAAATATTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGGAAGCCACTGTCCTGACATTAAATCCCACACAAATATTCTGG  200

seq1  TTATTTAATAGTAATTTATTGTAGTTTTACTGGAAACTTTACCCTCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATAGTAATTTATTGTAGTTTTACTGGAAACTTTACCCTCTTAG  250

seq1  TTCTTAAGAGGTTTTCCAGGCTCAATTAGCACCTTTTCTTCTAATATTGA  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCTTAAGAGGTTTTCCAGGCTCAATTACCACCTTTTCTTCTAATATTGA  300

seq1  TTTTACTGTATTCATTTTAGATTAAAAATTTTTTAAACTTAGAACTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGTATTCATTTTAGATTAAAAATTTTTTAAACTTAGAACTCAAA  350

seq1  TTTTAGCTGGATTTAAAGGAAATATCCCATTTAAAAATTCAGGCTGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTGGATTTAAAGGAAATATCCCATTTAAAAATTCAGGCTGATAA  400

seq1  GAAGACCTTCCTTGCCACCTGAAGAATGAGACCCTATTTATTTTATTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTTCCTTGCCACCTGAAGAATGAGACCCTATTTATTTTATTGGG  450

seq1  GTTCTTTGTGCTCAGTCCGGGTCATATAAGCTTTTTGGATACAGAATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGTGCTCAGTCCGGGTCATATAAGCTTTTTGGATACAGAATTCT  500

seq1  TGGCAAAATGTGAAGCAGGCATAGATGATATTGTTTTCCAGTACTTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAATGTGAAGCAGGCATAGATGATATTGTTTTCCAGTACTTCTTG  550

seq1  AGAGTGGGTAGCTGTGGTTATTTTTAATCACACTGCAGAGACTGTGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGTAGCTGTGGTTATTTTTAATCACACTGCAGAGACTGTGTGTA  600

seq1  GTCTATTTATCCTTCTACTTTACCATAGTTGATGCATCTCTTAACTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTATCCTTCTACTTTACCATAGTTGATGCATCTCTTAACTGATT  650

seq1  GCCCTGCCCAGAATCTGTGGTAATTTCTTAGGACACATTGCCTGTATGGA  700
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  GCCCTGCCCAGAATCTGTGTTAATTTCTTAGGACACATTGCCCGTATGGA  700

seq1  GACCTCTGAGGTGGCCCCTGTGTGTTGTGAGACATTCTCCTGAGAACGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGAGGTGGCCCCTGTGTGTTGTGAGACATTCTCCTGAGAACGAT  750

seq1  GGGCTGCAGTCAGGAGCTGTGACAAATTCTTGACCATTCGATGGGCTGTG  800
      |||||||||||  ||||||||||||| |||||||||||||||||||||||
seq2  GGGCTGCAGTC-TGAGCTGTGACAAA-TCTTGACCATTCGATGGGCTGTG  798

seq1  ACAGTTAGCTGGAGTCATCTATTTTATAGTATTAGTTTCCTTCCTAATAT  850
      ||||||  ||||||||| |   |||||| || ||||| || |||||||| 
seq2  ACAGTT-CCTGGAGTCACC--ATTTATATTA-TAGTTACCGTCCTAATA-  843

seq1  GCCCGACTTTCTGTGATAATGTGTGACTTTTTAAATTTGGAACACAAACA  900
      |||||||||| |||||| | ||||||||||   || |||||||||| | |
seq2  GCCCGACTTT-TGTGAT-ACGTGTGACTTT---AAATTGGAACACAGA-A  887

seq1  CTTCACAAAGCCATTCTGTGAATTCCTGACAATTTTGTTTATATGTTTCC  950
        ||||||||||||||||||| |||||||| ||   | || ||||||| |
seq2  TCTCACAAAGCCATTCTGTGAGTTCCTGACGATCCCG-TTGTATGTTT-C  935

seq1  TGTTATCTTTGATGTGGCTTTC  972
      ||||||||||||||| ||||||
seq2  TGTTATCTTTGATGTAGCTTTC  957