BAC Information

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BAC

Clone NameB6Ng01-082M08
Chromosome2 (Build37)
Map Location 52,874,011 - 53,058,713
singlet/doubletdoublet
Overlap geneFmnl2, Prpf40a, Arl6ip6
Upstream geneTnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2
Downstream geneLOC666872, LOC666876, LOC207933, Rprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082M08.bB6Ng01-082M08.g
ACCDH897230DH897231
length1,0491,171
definitionDH897230|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M08, 5' end.DH897231|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,874,011 - 52,875,061)(53,057,531 - 53,058,713)
sequence
gaattctccattctgatctttggcttctgggtgccttatcaacaggggaa
aggtagaaaattactatgttaggttttttttcgttatttgaaatatttca
tggggaagcaggttaagtggacaactcaaagtgaggtctgttctatttgc
cttcccctcctgtagcagctccagctacgtaagtggtgctggtcttatgg
tttaattggccttcctgataactggcatattgtcacgtgagaaggtaaat
tgtttgtaaaaaacatgggtagcccataacgttgctgcccactttaacta
gttccaccctgtggtattattttgtttttaactcattatgacaaatccat
acccttctgacaggtataaaataaggagtaaaagcttttttttttttgtc
tttccttttatattcaaattttactctgttgtctgtgacataagcatctt
tctccaggtcctccccttaggaaatccagagtgtgagctctgcacttcaa
aagaaaaggttttttttttttcccgtttggcatagaaataactcttttat
tttccctgtttttttattatgagtgttaatattcctttttaaattatttt
acttatttacatcctgaatgttgccccctgttctgtctttaacaatcaaa
taaagtatattcctgtgatgcctacccacttctttgtcccccccctttga
cgcagacagacagacagacagacagacagacagacagacagacagacaca
cacacacacacacacacacacacacacacacacacacacacacaaggggc
atggtacttctgtgtgttgatacagttgccagtgaccatgtctgtgatta
tcctttgtacaggtggaagttttactttatcaattagaatatgggcttga
tgggcagagtcttacttagcatgcatgaggtctaggtttaattccagtac
ccaagttggcgaaaaattagagaacacagagcaaaggtagactgaatact
tacctgccttcttctctccttcaactacccctccccattataatgtgca
gaattcatgttacttagtatttaattaagataaaaaactggaggcacata
aaataaagtcttcttttcccctgcgatttatgcatgcccatagctagtta
actcaaagcttgctagcatctttctaaaagccaacagatcctggaaatgc
aacatacagagtactcaggtgaagtgttctctgtaccacccagaaataaa
attcttactttactgctttcacagagcagtagtgtatgtggaaagctttt
cttatcagtacacagttacaacagcctcaccacatagttttcagcctttt
cactattacaaaaaaaaaaaaaaaaaaaattgcaaatataacatcgcaaa
cagcacattacacagacatatgtttcagattttcagtgtgaactactttc
aaaagtacagaccttgaactttgaactaaatacatacatctatcttctct
tgaactcaatttattagttgatacaatgatgaaacttcatcttattcatg
aagtgaaacttactggtttagttgtctttgcattagttgtaaactcagtg
tttacgactaatgcaaagacaagcagagtgtagatttcctactcaaattc
attgttagtgcatctttcaaaataaattagtttgaagattcagttactct
tcagatcaatatctggaattgtatttctgtaaacttttcccattaaaaag
ttgagaaagaagtgtgatgaattcttatgcatatatcactcaacttacta
atgaccaactctgctgactctgttctctgcacctgctttttcactatacc
agagcaaacggtgtcattatgcattttctgaactaatatactgatggaca
tgaatggtttaaaaagtattaatatttttggcatactaagtatattaaat
gtaagacttttttttaaaaagtatactggtggaacatatattttaagtca
atttaaaatggtgctttttctcctcttatactactttttgagaaggtctt
acagaccacgttggccttcgtactgctcaagataagccttgaacttctga
gtctctgtctctgcctccagaatgaattatggagagtcggcctaaagttg
ttcttcggaagttgttcttctgacattctggtgtggatttgatacaaaat
taaacattcaaatcaaagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52874011_52875061
seq2: B6Ng01-082M08.b_48_1096

seq1  GAATTCTCCATTCTGATCTTTGGCTTCTGGGTGCCTTATCAACAGGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTCTGATCTTTGGCTTCTGGGTGCCTTATCAACAGGGGAA  50

seq1  AGGTAGAAAATTACTATGTTAGGTTTTTTTTCGTTATTTGAAATATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAAATTACTATGTTAGGTTTTTTTTCGTTATTTGAAATATTTCA  100

seq1  TGGGGAAGCAGGTTAAGTGGACAACTCAAAGTGAGGTCTGTTCTATTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGCAGGTTAAGTGGACAACTCAAAGTGAGGTCTGTTCTATTTGC  150

seq1  CTTCCCCTCCTGTAGCAGCTCCAGCTACGTAAGTGGTGCTGGTCTTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTCCTGTAGCAGCTCCAGCTACGTAAGTGGTGCTGGTCTTATGG  200

seq1  TTTAATTGGCCTTCCTGATAACTGGCATATTGTCACGTGAGAAGGTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGGCCTTCCTGATAACTGGCATATTGTCACGTGAGAAGGTAAAT  250

seq1  TGTTTGTAAAAAACATGGGTAGCCCATAACGTTGCTGCCCACTTTAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAAAAAACATGGGTAGCCCATAACGTTGCTGCCCACTTTAACTA  300

seq1  GTTCCACCCTGTGGTATTATTTTGTTTTTAACTCATTATGACAAATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCCTGTGGTATTATTTTGTTTTTAACTCATTATGACAAATCCAT  350

seq1  ACCCTTCTGACAGGTATAAAATAAGGAGTAAAAGCTTTTTTTTTTTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTGACAGGTATAAAATAAGGAGTAAAAGCTTTTTTTTTTTTGTC  400

seq1  TTTCCTTTTATATTCAAATTTTACTCTGTTGTCTGTGACATAAGCATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTATATTCAAATTTTACTCTGTTGTCTGTGACATAAGCATCTT  450

seq1  TCTCCAGGTCCTCCCCTTAGGAAATCCAGAGTGTGAGCTCTGCACTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGTCCTCCCCTTAGGAAATCCAGAGTGTGAGCTCTGCACTTCAA  500

seq1  AAGAAAAGGTTTTTTTTTTTTCCCGTTTGGCATAGAAATAACTCTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGTTTTTTTTTTTTCCCGTTTGGCATAGAAATAACTCTTTTAT  550

seq1  TTTCCCTGTTTTTTTATTATGAGTGTTAATATTCCTTTTTAAATTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGTTTTTTTATTATGAGTGTTAATATTCCTTTTTAAATTATTTT  600

seq1  ACTTATTTACATCCTGAATGTTGCCCCCTGTTCTGTCTTTAACAATCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTACATCCTGAATGTTGCCCCCTGTTCTGTCTTTAACAATCAAA  650

seq1  TAAAGTATATTCCTGTGATGCCTACCCACTTCTTTGTCCCCCCCCTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATATTCCTGTGATGCCTACCCACTTCTTTGTCCCCCCCCTTTGA  700

seq1  CGCAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACACA  750

seq1  CACACACACACACACACACACACACACACACACACACACACACAAGGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACAAGGGGC  800

seq1  ATGGTACTTCTGTGTGTTGATACAGTTGCCAGTGACCATGTCTGTGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACTTCTGTGTGTTGATACAGTTGCCAGTGACCATGTCTGTGATTA  850

seq1  TCCTTTGTACAGGTGGAAGTTTTACTTTATCAATTAGAATAT-GGCTTGA  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCTTTGTACAGGTGGAAGTTTTACTTTATCAATTAGAATATGGGCTTGA  900

seq1  T-GGCAGAGTCTTACTTAGCATGCATGAGGTCTAGGTTTTAATTCCAGTA  948
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGGCAGAGTCTTACTTAGCATGCATGAGGTCTAGG-TTTAATTCCAGTA  949

seq1  CCCAAGTTGGCGAAAACATAGAGAACACAGAAGCAAAGGTAGACTGAATA  998
      ||||||||||||||||  |||||||||||| |||||||||||||||||||
seq2  CCCAAGTTGGCGAAAAATTAGAGAACACAG-AGCAAAGGTAGACTGAATA  998

seq1  CTTACCTGCCTTCTTCCTCTCCTTCAAACTACCCCTCCCCATATAT-ATG  1047
      ||||||||||||||| ||||||||| |||||||||||||||| ||| |||
seq2  CTTACCTGCCTTCTT-CTCTCCTTC-AACTACCCCTCCCCAT-TATAATG  1045

seq1  TGCA  1051
      ||||
seq2  TGCA  1049

seq1: chr2_53057531_53058713
seq2: B6Ng01-082M08.g_70_1240 (reverse)

seq1  GGGCTTTGATTATGAATTGTTTAATATTTGTATCAAATGCA-ACAGGAAT  49
      ||||||||||| |||| |||||||| |||||||||||| || ||  ||||
seq2  GGGCTTTGATT-TGAA-TGTTTAAT-TTTGTATCAAATCCACACCAGAAT  47

seq1  GTCAGGAAGAACAATACTTTCAGAAGAACAAACTTTAGCCAGA--CTCCA  97
      |||| |||||||||    ||| ||||||| |||||||| | ||  |||||
seq2  GTCA-GAAGAACAA---CTTCCGAAGAAC-AACTTTAGGCCGACTCTCCA  92

seq1  TAATACATACTGGGAGGCAGAGACAGGAGACTCAGAAGTTCAAGGCTATC  147
      |||| ||| || ||||||||||||| |||||||||||||||||||||   
seq2  TAATTCATTCT-GGAGGCAGAGACA-GAGACTCAGAAGTTCAAGGCTTAT  140

seq1  CTTGAAGCAGTACGAAGGCCAACGTGGTCTGTAAGACCCTTTCTCAAAAA  197
      |||| |||||||||||||||||||||||||||||||||  ||||||||||
seq2  CTTG-AGCAGTACGAAGGCCAACGTGGTCTGTAAGACC--TTCTCAAAAA  187

seq1  GTAGTTATAAGAGGAAGAAAAAGCACAATTTTAAATTGACTTAAAATTAT  247
      |||| ||||||||| ||||||||||| ||||||||||||||||||| |||
seq2  GTAG-TATAAGAGG-AGAAAAAGCACCATTTTAAATTGACTTAAAA-TAT  234

seq1  ATGTTCCA-CAGTATACTTTTTTAAAAAAAAGTCTTACA-TTAATATACT  295
      |||||||| |||||||| ||||||||||||||||||||| ||||||||||
seq2  ATGTTCCACCAGTATAC-TTTTTAAAAAAAAGTCTTACATTTAATATACT  283

seq1  TAGTATGCCAAAAATATTAATACTTTTTAAACCATTCATGTCCATCAGTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGCCAAAAATATTAATACTTTTTAAACCATTCATGTCCATCAGTA  333

seq1  TATTAGTTCAGAAAATGCATAATGACACCGTTTGCTCTGGTATAGTGAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTCAGAAAATGCATAATGACACCGTTTGCTCTGGTATAGTGAAA  383

seq1  AAGCAGGTGCAGAGAACAGAGTCAGCAGAGTTGGTCATTAGTAAGTTGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTGCAGAGAACAGAGTCAGCAGAGTTGGTCATTAGTAAGTTGAG  433

seq1  TGATATATGCATAAGAATTCATCACACTTCTTTCTCAACTTTTTAATGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATGCATAAGAATTCATCACACTTCTTTCTCAACTTTTTAATGGG  483

seq1  AAAAGTTTACAGAAATACAATTCCAGATATTGATCTGAAGAGTAACTGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTACAGAAATACAATTCCAGATATTGATCTGAAGAGTAACTGAA  533

seq1  TCTTCAAACTAATTTATTTTGAAAGATGCACTAACAATGAATTTGAGTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAACTAATTTATTTTGAAAGATGCACTAACAATGAATTTGAGTAG  583

seq1  GAAATCTACACTCTGCTTGTCTTTGCATTAGTCGTAAACACTGAGTTTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTACACTCTGCTTGTCTTTGCATTAGTCGTAAACACTGAGTTTAC  633

seq1  AACTAATGCAAAGACAACTAAACCAGTAAGTTTCACTTCATGAATAAGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGCAAAGACAACTAAACCAGTAAGTTTCACTTCATGAATAAGAT  683

seq1  GAAGTTTCATCATTGTATCAACTAATAAATTGAGTTCAAGAGAAGATAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCATCATTGTATCAACTAATAAATTGAGTTCAAGAGAAGATAGA  733

seq1  TGTATGTATTTAGTTCAAAGTTCAAGGTCTGTACTTTTGAAAGTAGTTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATTTAGTTCAAAGTTCAAGGTCTGTACTTTTGAAAGTAGTTCA  783

seq1  CACTGAAAATCTGAAACATATGTCTGTGTAATGTGCTGTTTGCGATGTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAATCTGAAACATATGTCTGTGTAATGTGCTGTTTGCGATGTTA  833

seq1  TATTTGCAATTTTTTTTTTTTTTTTTTTTGTAATAGTGAAAAGGCTGAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAATTTTTTTTTTTTTTTTTTTTGTAATAGTGAAAAGGCTGAAA  883

seq1  ACTATGTGGTGAGGCTGTTGTAACTGTGTACTGATAAGAAAAGCTTTCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTGGTGAGGCTGTTGTAACTGTGTACTGATAAGAAAAGCTTTCCA  933

seq1  CATACACTACTGCTCTGTGAAAGCAGTAAAGTAAGAATTTTATTTCTGGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTACTGCTCTGTGAAAGCAGTAAAGTAAGAATTTTATTTCTGGG  983

seq1  TGGTACAGAGAACACTTCACCTGAGTACTCTGTATGTTGCATTTCCAGGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGAGAACACTTCACCTGAGTACTCTGTATGTTGCATTTCCAGGA  1033

seq1  TCTGTTGGCTTTTAGAAAGATGCTAGCAAGCTTTGAGTTAACTAGCTATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGCTTTTAGAAAGATGCTAGCAAGCTTTGAGTTAACTAGCTATG  1083

seq1  GGCATGCATAAATCGCAGGGGAAAAGAAGACTTTATTTTATGTGCCTCCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCATAAATCGCAGGGGAAAAGAAGACTTTATTTTATGTGCCTCCA  1133

seq1  GTTTTTTATCTTAATTAAATACTAAGTTACATGAATTC  1183
      ||||||||||||||||||||||||||| ||||||||||
seq2  GTTTTTTATCTTAATTAAATACTAAGTAACATGAATTC  1171