BAC Information

Click to search

BAC

Clone NameB6Ng01-083F12
Chromosome2 (Build37)
Map Location 9,808,184 - 9,933,899
singlet/doubletdoublet
Overlap gene4930412O13Rik, Taf3
Upstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768
Downstream geneAtp5c1, Kin, Itih2, Itih5, Sfmbt2, LOC100040690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083F12.bB6Ng01-083F12.g
ACCDH897632DH897633
length693279
definitionDH897632|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F12, 5' end.DH897633|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,933,207 - 9,933,899)(9,808,184 - 9,808,462)
sequence
gaattcattctttgtttcttctggttttcctaccactgacaatgtagaat
ataatgtctttacatgtgcattccagcctaatgaaggatgcttttagtag
ctcattacaaaataagagattagatgtaagtttcctttttctcttggttc
cctttataaaattgaaaacaccaccattaataagatatgaagacctacgg
ttggaaagttgggtggtaactcttaacctaactcttgaacgtttgcagcc
ctcactaggctgtgagctgctgaacttgacatccttctgtctgtctgctt
cagtctcccagttttcacagccttgaatgtctcagcaggccttgccctta
gtctttaaactcagcctgatagtttcctgctgtggccactttgttcttca
gaatgttttcaaggttttcccttcttaaagtcagtttcatcttgagctga
tttgaagataaagtttctgcagcagaagtttgtaggtccctctgatagaa
ttaacctacttattataggtaaataataaataaataaataaataaataaa
taaataaataacaggaagtcttctatagtctagtcagctaatagtgaagt
cgtaattatttaagatcagttgtttaatatgctagttcagaaacactggt
ttgtatttttggttgttggttggtgtgtttttagttttggttg

tgggtctctcaaactgtgatttcagggtcctggtgtggtctataagggga
ggagatgtcaaaaaatatggaactacacctacagcaaggggtccagcggg
cacagctacttcattcctattctggatggaatcacacctgtcagtttgtt
accctgctctattaaagaaatcgcctttaaaaaaaataataaagcaacgg
ctctgctcatatctcagattcaccagactctcctttccttgcattttaac
attatcctgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9933207_9933899
seq2: B6Ng01-083F12.b_47_739 (reverse)

seq1  CAACCAAAACTAAAAACACACCAACCAACAACCAAAAATACAAACCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAACTAAAAACACACCAACCAACAACCAAAAATACAAACCAGTG  50

seq1  TTTCTGAACTAGCATATTAAACAACTGATCTTAAATAATTACGACTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAACTAGCATATTAAACAACTGATCTTAAATAATTACGACTTCAC  100

seq1  TATTAGCTGACTAGACTATAGAAGACTTCCTGTTATTTATTTATTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCTGACTAGACTATAGAAGACTTCCTGTTATTTATTTATTTATTT  150

seq1  ATTTATTTATTTATTTATTATTTACCTATAATAAGTAGGTTAATTCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTATTTACCTATAATAAGTAGGTTAATTCTATC  200

seq1  AGAGGGACCTACAAACTTCTGCTGCAGAAACTTTATCTTCAAATCAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGACCTACAAACTTCTGCTGCAGAAACTTTATCTTCAAATCAGCTC  250

seq1  AAGATGAAACTGACTTTAAGAAGGGAAAACCTTGAAAACATTCTGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAACTGACTTTAAGAAGGGAAAACCTTGAAAACATTCTGAAGAA  300

seq1  CAAAGTGGCCACAGCAGGAAACTATCAGGCTGAGTTTAAAGACTAAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGCCACAGCAGGAAACTATCAGGCTGAGTTTAAAGACTAAGGGC  350

seq1  AAGGCCTGCTGAGACATTCAAGGCTGTGAAAACTGGGAGACTGAAGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGCTGAGACATTCAAGGCTGTGAAAACTGGGAGACTGAAGCAGA  400

seq1  CAGACAGAAGGATGTCAAGTTCAGCAGCTCACAGCCTAGTGAGGGCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAAGGATGTCAAGTTCAGCAGCTCACAGCCTAGTGAGGGCTGCA  450

seq1  AACGTTCAAGAGTTAGGTTAAGAGTTACCACCCAACTTTCCAACCGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCAAGAGTTAGGTTAAGAGTTACCACCCAACTTTCCAACCGTAGG  500

seq1  TCTTCATATCTTATTAATGGTGGTGTTTTCAATTTTATAAAGGGAACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATATCTTATTAATGGTGGTGTTTTCAATTTTATAAAGGGAACCAA  550

seq1  GAGAAAAAGGAAACTTACATCTAATCTCTTATTTTGTAATGAGCTACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGGAAACTTACATCTAATCTCTTATTTTGTAATGAGCTACTAA  600

seq1  AAGCATCCTTCATTAGGCTGGAATGCACATGTAAAGACATTATATTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCTTCATTAGGCTGGAATGCACATGTAAAGACATTATATTCTAC  650

seq1  ATTGTCAGTGGTAGGAAAACCAGAAGAAACAAAGAATGAATTC  693
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGTGGTAGGAAAACCAGAAGAAACAAAGAATGAATTC  693


seq1: chr2_9808184_9808462
seq2: B6Ng01-083F12.g_75_353

seq1  TGGGTCTCTCAAACTGTGATTTCAGGGTCCTGGTGTGGTCTATAAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCTCAAACTGTGATTTCAGGGTCCTGGTGTGGTCTATAAGGGGA  50

seq1  GGAGATGTCAAAAAATATGGAACTACACCTACAGCAAGGGGTCCAGCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTCAAAAAATATGGAACTACACCTACAGCAAGGGGTCCAGCGGG  100

seq1  CACAGCTACTTCATTCCTATTCTGGATGGAATCACACCTGTCAGTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTACTTCATTCCTATTCTGGATGGAATCACACCTGTCAGTTTGTT  150

seq1  ACCCTGCTCTATTAAAGAAATCGCCTTTAAAAAAAATAATAAAGCAACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTCTATTAAAGAAATCGCCTTTAAAAAAAATAATAAAGCAACGG  200

seq1  CTCTGCTCATATCTCAGATTCACCAGACTCTCCTTTCCTTGCATTTTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCATATCTCAGATTCACCAGACTCTCCTTTCCTTGCATTTTAAC  250

seq1  ATTATCCTGTGTGTGTGTGTGTGTGTGTG  279
      |||||||||||||||||||||||||||||
seq2  ATTATCCTGTGTGTGTGTGTGTGTGTGTG  279


| Home | SequenceCutter | Blast | Download |