BAC Information

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BAC

Clone NameB6Ng01-084E03
Chromosome2 (Build37)
Map Location 121,820,933 - 121,982,006
singlet/doubletdoublet
Overlap geneCtdspl2, Eif3s1, 4930424G05Rik, B2m
Upstream geneTmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3
Downstream geneTrim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084E03.bB6Ng01-084E03.g
ACCDH898271DH898272
length5501,115
definitionDH898271|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E03, 5' end.DH898272|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,820,933 - 121,821,488)(121,980,885 - 121,982,006)
sequence
ttaagtttctcaatttgaaatttatctcttacaaatggcttctaggttgt
tctgtgtgtggttttgttggtggtggtagtggttttagttttgggttttt
tttttgttttttgtttttttttgttatttttgttttttttgcttttttat
gtgttttttttttttttttttgagtagtgaaataaatatgggaaatggat
tcatttggctcctttcagtatggatatgctatattgaaatttttcttatt
gcttccaacatttctgcattttctttttaaaaattggtattacgtgtgga
cctggataattgtatttgtttggaaaaaaaaacagtacatattaactaaa
ggcttagaaagctatacagtatattatacctacttttatagaattccaaa
aactactttttcacatatttgagttgcactttctgaaagtgaacagaaag
taacacaactatttaaatagcaatgagcttgatgttgagttttagaagct
atagagatgattgcagttttatttacttcatgaaggacataattccctca

gaattccactcctgttgtttggccccattcctgttgccactacctcccaa
acaggttttcctgtatatgatctgcccactcaggaaggttgccacatccc
caggctgtgggcaaaagggacttccccaccccctctcagtttcctcttta
cccaaagccccttacaacaaagaggaagggtggtggttctctacatctgc
cttcccacagaaattagatcagcaatcctactgtctagtcagtctcctag
tgaggctttgaaagttaaaattaataggacagtttctggttgctctgatg
gtgacattacttgtagtgtccagaaactgaaggtcagaggttgcaatcct
tacagacacacacatctttagaatcaggatttataatcctgttgatttat
ttcttgaaagttggttggccacttgctaggctaggctaatagaactgaat
aagtgcagagcaacacaaagggtgtagttgggaaaagcatcaccgagcca
acaatactacaatagagtcagagccattgttagggctcaaagcagtctgg
cagtgtggtgctaaagaagacacacacacaacccaagtttcctgctcaag
gtttcaccagtagacacaggacttggggacaagaaattggaaatatgatc
cttcttgccaccatgggtcctaacaaagttccactaggacgggtgggaag
ggtctacttccccacatctgtcactctgcagcctaccctgaggtccactg
ggacaggtggaaaggatccacttccccacatctgtcactctgcaagctac
cctgaggtccttttccaaggtggagggtggggttcattctcccagtccct
cacccaggttcatctttgagctcttggctgctgcaggaagcagtctttgg
aggtgcaattctagtcttctttccttctactgagtcccaggcttccagtt
gcagtcttgtctgtgatgtctcctgtgcgatgaacgtctctggcttttcc
caggttatggaggacttcccatgaagtttccctatgcactttaagccagt
agtaacccagcacttttcagtcttactgaaactcactagccaactggatg
aacctttcagaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121820933_121821488
seq2: B6Ng01-084E03.b_40_595

seq1  GAATTCTTAAGTTTCTCAATTTGAAATTTATCTCTTACAAATGGCTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGTTTCTCAATTTGAAATTTATCTCTTACAAATGGCTTCTA  50

seq1  GGTTGTTCTGTGTGTGGTTTTGTTGGTGGTGGTAGTGGTTTTAGTTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTCTGTGTGTGGTTTTGTTGGTGGTGGTAGTGGTTTTAGTTTTGG  100

seq1  GTTTTTTTTTTGTTTTTTGTTTTTTTTTGTTATTTTTGTTTTTTTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTGTTTTTTGTTTTTTTTTGTTATTTTTGTTTTTTTTGCTT  150

seq1  TTTTATGTGTTTTTTTTTTTTTTTTTTGAGTAGTGAAATAAATATGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGTTTTTTTTTTTTTTTTTTGAGTAGTGAAATAAATATGGGAA  200

seq1  ATGGATTCATTTGGCTCCTTTCAGTATGGATATGCTATATTGAAATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTCATTTGGCTCCTTTCAGTATGGATATGCTATATTGAAATTTTT  250

seq1  CTTATTGCTTCCAACATTTCTGCATTTTCTTTTTAAAAGTTGGTATTACG  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTATTGCTTCCAACATTTCTGCATTTTCTTTTTAAAAATTGGTATTACG  300

seq1  TGTGGACCTGGATAATTGTATTTGTTTGGAAAAAAAAACAGTACATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCTGGATAATTGTATTTGTTTGGAAAAAAAAACAGTACATATTA  350

seq1  ACTAAAGGCTTAGAAAGCTATACAGTATATTATACCTACTTTTATAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGCTTAGAAAGCTATACAGTATATTATACCTACTTTTATAGAAT  400

seq1  TCCAAAAACTACTTTTTCACATATTTGAGTTGCACTTTCTGAAAGTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAACTACTTTTTCACATATTTGAGTTGCACTTTCTGAAAGTGAAC  450

seq1  AGAAAGTAACACAACTATCTAAATAGCAATGAGCTTGATGTTGAGTTTTA  500
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAAAGTAACACAACTATTTAAATAGCAATGAGCTTGATGTTGAGTTTTA  500

seq1  GAAGCTATAGAGATGATTGCAGTTTTATTTACTTTATGAAGGACATAATT  550
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAGCTATAGAGATGATTGCAGTTTTATTTACTTCATGAAGGACATAATT  550

seq1  CCCTCA  556
      ||||||
seq2  CCCTCA  556

seq1: chr2_121980885_121982006
seq2: B6Ng01-084E03.g_69_1183 (reverse)

seq1  TTCTTCTGTGAAGGTTTCATCCTGTTTGGCTAGTGAAGTTTCAGTAGGAC  50
      ||||||  |||| | ||||||| | |||||||||| |||||||||| |||
seq2  TTCTTC--TGAAAGGTTCATCCAG-TTGGCTAGTG-AGTTTCAGTAAGAC  46

seq1  TGAAAGTGGCTGTGTTACTACTGGGCTTAAGGTGCATAGGGAAACTTCAT  100
      |||||   |||| ||||||||| ||||||| |||||||||||||||||||
seq2  TGAAAAGTGCTGGGTTACTACT-GGCTTAAAGTGCATAGGGAAACTTCAT  95

seq1  GGGAAGTTCCTCCATAACCTGGAGAAAAGGCAGAGACGTTCATCGCACA-  149
      |||||| ||||||||||||||| |||||| ||||||||||||||||||| 
seq2  GGGAAG-TCCTCCATAACCTGG-GAAAAGCCAGAGACGTTCATCGCACAG  143

seq1  GAGACATCACAAGAACAAGACTGC-ACTGGAAGCCTGGGAACTCAGTAGA  198
      |||||||||||   |||||||||| |||||||||||||| ||||||||||
seq2  GAGACATCACA--GACAAGACTGCAACTGGAAGCCTGGG-ACTCAGTAGA  190

seq1  AGGAAAGAAGACTAGAATTGCACCTCCAAAGACTGCTTCCTGCAGCAGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAAGACTAGAATTGCACCTCCAAAGACTGCTTCCTGCAGCAGCC  240

seq1  AAGAGCTC-AAGATGAACCTGGGTGAGGGACCTGGGAGAATGAACCCCAC  297
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  AAGAGCTCAAAGATGAACCTGGGTGAGGGA-CTGGGAGAATGAACCCCAC  289

seq1  CCTCCACCTTGG-AAAGGACCTCAGGGTAGCTTGCAGAGTGACAGATGTG  346
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCTTGGAAAAGGACCTCAGGGTAGCTTGCAGAGTGACAGATGTG  339

seq1  GGGAAGTGGATCCTTTCCACCTGTCCCAGTGGACCTCAGGGTAGGCTGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGGATCCTTTCCACCTGTCCCAGTGGACCTCAGGGTAGGCTGCA  389

seq1  GAGTGACAGATGTGGGGAAGTAGACCCTTCCCACCCGTCCTAGTGGAACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACAGATGTGGGGAAGTAGACCCTTCCCACCCGTCCTAGTGGAACT  439

seq1  TTGTTAGGACCCATGGTGGCAAGAAGGATCATATTTCCAATTTCTTGTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGGACCCATGGTGGCAAGAAGGATCATATTTCCAATTTCTTGTCC  489

seq1  CCAAGTCCTGTGTCTACTGGTGAAACCTTGAGCAGGAAACTTGGGTTGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCTGTGTCTACTGGTGAAACCTTGAGCAGGAAACTTGGGTTGTG  539

seq1  TGTGTGTCTTCTTTAGCACCACACTGCCAGACTGCTTTGAGCCCTAACAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTTCTTTAGCACCACACTGCCAGACTGCTTTGAGCCCTAACAA  589

seq1  TGGCTCTGACTCTATTGTAGTATTGTTGGCTCGGTGATGCTTTTCCCAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGACTCTATTGTAGTATTGTTGGCTCGGTGATGCTTTTCCCAAC  639

seq1  TACACCCTTTGTGTTGCTCTGCACTTATTCAGTTCTATTAGCCTAGCCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCTTTGTGTTGCTCTGCACTTATTCAGTTCTATTAGCCTAGCCTA  689

seq1  GCAAGTGGCCAACCAACTTTCAAGAAATAAATCAACAGGATTATAAATCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGGCCAACCAACTTTCAAGAAATAAATCAACAGGATTATAAATCC  739

seq1  TGATTCTAAAGATGTGTGTGTCTGTAAGGATTGCAACCTCTGACCTTCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTAAAGATGTGTGTGTCTGTAAGGATTGCAACCTCTGACCTTCAG  789

seq1  TTTCTGGACACTACAAGTAATGTCACCATCAGAGCAACCAGAAACTGTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGACACTACAAGTAATGTCACCATCAGAGCAACCAGAAACTGTCC  839

seq1  TATTAATTTTAACTTTCAAAGCCTCACTAGGAGACTGACTAGACAGTAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTTAACTTTCAAAGCCTCACTAGGAGACTGACTAGACAGTAGG  889

seq1  ATTGCTGATCTAATTTCTGTGGGAAGGCAGATGTAGAGAACCACCACCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGATCTAATTTCTGTGGGAAGGCAGATGTAGAGAACCACCACCCT  939

seq1  TCCTCTTTGTTGTAAGGGGCTTTGGGTAAAGAGGAAACTGAGAGGGGGTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTGTTGTAAGGGGCTTTGGGTAAAGAGGAAACTGAGAGGGGGTG  989

seq1  GGGAAGTCCCTTTTGCCCACAGCCTGGGGATGTGGCAACCTTCCTGAGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTCCCTTTTGCCCACAGCCTGGGGATGTGGCAACCTTCCTGAGTG  1039

seq1  GGCAGATCATATACAGGAAAACCTGTTTGGGAGGTAGTGGCAACAGGAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCATATACAGGAAAACCTGTTTGGGAGGTAGTGGCAACAGGAAT  1089

seq1  GGGGCCAAACAACAGGAGTGGAATTC  1122
      ||||||||||||||||||||||||||
seq2  GGGGCCAAACAACAGGAGTGGAATTC  1115