BAC Information

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BAC

Clone NameB6Ng01-084J03
Chromosome2 (Build37)
Map Location 79,074,422 - 79,174,149
singlet/doubletdoublet
Overlap geneItga4, Cerkl
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526
Downstream geneNeurod1, Ssfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084J03.bB6Ng01-084J03.g
ACCDH898487DH898488
length1,1711,096
definitionDH898487|Mus musculus domesticus DNA, BAC clone: B6Ng01-084J03, 5' end.DH898488|Mus musculus domesticus DNA, BAC clone: B6Ng01-084J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,074,422 - 79,075,626)(79,173,046 - 79,174,149)
sequence
gaattccttgagagggcttcttagtagtgttacaatatattcaccaagct
ggcgagagaagaatgaaagggaagaggtgagtcttttaggagtagaggtg
ttcatgtttcattccataccataattgatttttaattgctagttcagcaa
tgagtttcagtttttatcttacaggatcttgctaagaccagtggcagaca
ccatttttgacaatattttctcatagtttggtatgcagcgagaatgctcc
tttgataaattgcttatgtaagtcactctctttattagtcaagtaatctg
aaatataaattataagcttttcaagtatttgttttttcacatctagaaac
taatgactttggttactctggagactattatggcagatttttctgcaaat
gactatttaaatgagttttcagtatgggaaaaatatgtcacttgtaagta
atgtattctgattattttctaatgttgatagtcattaataaaaatcattt
tcagccatttaggtcatattaaactgttaaattcattattatttaattat
attaaatttgtgtgactcaaaaataaccaggggatctgaattcaaaaaag
ataatataaaaacaacaagtaactcgtgtgttttctgtctacctgtggca
atcattgctaattaggagagttagaaaatcagatgctcactaaccttgtg
tgctagggaacctatctcaactttcctctttataaaattgaacctattaa
gatgtgactaatctatatcacaagatttcttttggtgctaagcaggaagt
cttgtgcaaacatggagcacttgagatagagaacagccatcaggaaagac
atagacccacctctgaccatggctgatgggtgaatcccttgagagggctt
cttagtagtgttacaatacattcaccaagctggcgagagagaatgaaagg
aaagagtgagtcttaggagtgcatcataccccacatatatattgtttggc
tatggtacaaagcagtcttggatgcaacaggatcatgtcaaacactgtac
attcttcacagaatgataaaacatcataagtcattccagaggagctacga
cccagtaacaacacccagtaaagaataactggacagattagcattgctcc
ttcagctacaacagagcatgg
gaattccaagggtgaaacttgtgctagagtttgtttcatatcagataact
aagattgtaatgaagtcagtgagatcaactgaagagtctgtctttaacta
gaaattatgacatcattctggtgggaaattcttcacaggtacaaactgtc
atacagtagagatgaatgggcatggaaagaggatcctttttcagaaaacc
tggggctatctggttaaagtttcaaagctataaagatgtcagaatgatga
tgaaacttaattctaataggggccaccatgaagcatcatgcttttttttg
ttttttttttttttttttttttttgttatatttagttcaattttcccttt
gtggagacttatatcattgaagaagtaaaaattcacccaaagagtaatag
caatggatacagcccacaggaggagggtggaaaccatacaactgcttcag
aacacgggtttccgtggaatgtagatggtgacttaatggaagctgcatca
gaggttcacattaggtaagcccaactattttatgactttctgtgcagaat
actagatgcaacactattaatataataagggcgttctgcctcctaagccc
aagcagaagattaaaagccagaaagttagcacattgtataaatacatatg
caccacctctcaataaatacaaacctgagcatttatgctggcattgcaaa
cattattttgtataaatgatacagacatgttgacaatttacattgtttgt
ctttgaggatattcttaaaccttataaggttaatgtagtgccatactctc
tagccctgctcccatcccaccaccacgaccaaactgggttctaatatcat
gtaataatctgttgaacagtttgctttataaaatccttttttatttaatt
cagcacacaagtaatggagttgactgttagatctttataatgcattccac
acactgtacaaatatatcaccaagaatgagcatgggtataaagttgtaga
aactcatactcatactcaatctagccagcttaatgtctcagcagctgaat
gtgctgggagggagggacaggtcctctgtttagggtgggggttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79074422_79075626
seq2: B6Ng01-084J03.b_46_1216

seq1  GAATTCCTTGAGAGGGCTTCTTAGTAGTGTTACAATATATTCACCAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAGAGGGCTTCTTAGTAGTGTTACAATATATTCACCAAGCT  50

seq1  GGCGAGAGAAGAATGAAAGGGAAGAGGTGAGTCTTTTAGGAGTAGAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGAGAAGAATGAAAGGGAAGAGGTGAGTCTTTTAGGAGTAGAGGTG  100

seq1  TTCATGTTTCATTCCATACCATAATTGATTTTTAATTGCTAGTTCAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTTCATTCCATACCATAATTGATTTTTAATTGCTAGTTCAGCAA  150

seq1  TGAGTTTCAGTTTTTATCTTACAGGATCTTGCTAAGACCAGTGGCAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCAGTTTTTATCTTACAGGATCTTGCTAAGACCAGTGGCAGACA  200

seq1  CCATTTTTGACAATATTTTCTCATAGTTTGGTATGCAGCGAGAATGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTGACAATATTTTCTCATAGTTTGGTATGCAGCGAGAATGCTCC  250

seq1  TTTGATAAATTGCTTATGTAAGTCACTCTCTTTATTAGTCAAGTAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAAATTGCTTATGTAAGTCACTCTCTTTATTAGTCAAGTAATCTG  300

seq1  AAATATAAATTATAAGCTTTTCAAGTATTTGTTTTTTCACATCTAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAATTATAAGCTTTTCAAGTATTTGTTTTTTCACATCTAGAAAC  350

seq1  TAATGACTTTGGTTACTCTGGAGACTATTATGGCAGATTTTTCTGCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTTTGGTTACTCTGGAGACTATTATGGCAGATTTTTCTGCAAAT  400

seq1  GACTATTTAAATGAGTTTTCAGTATGGGAAAAATATGTCACTTGTAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTAAATGAGTTTTCAGTATGGGAAAAATATGTCACTTGTAAGTA  450

seq1  ATGTATTCTGATTATTTTCTAATGTTGATAGTCATTAATAAAAATCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCTGATTATTTTCTAATGTTGATAGTCATTAATAAAAATCATTT  500

seq1  TCAGCCATTTAGGTCATATTAAACTGTTAAATTCATTATTATTTAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCATTTAGGTCATATTAAACTGTTAAATTCATTATTATTTAATTAT  550

seq1  ATTAAATTTGTGTGACTCAAAAATAACCAGGGGATCTGAATTCAAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTGTGTGACTCAAAAATAACCAGGGGATCTGAATTCAAAAAAG  600

seq1  ATAATATAAAAACAACAAGTAACTCGTGTGTTTTCTGTCTACCTGTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAAAAACAACAAGTAACTCGTGTGTTTTCTGTCTACCTGTGGCA  650

seq1  ATCATTGCTAATTAGGAGAGTTAGAAAATCAGATGCTCACTAACCTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGCTAATTAGGAGAGTTAGAAAATCAGATGCTCACTAACCTTGTG  700

seq1  TGCTAGGGAACCTATCTCAACTTTCCTCTTTATAAAATTGAACCTATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGGAACCTATCTCAACTTTCCTCTTTATAAAATTGAACCTATTAA  750

seq1  GATGTGACTAATCTATATCACAAGATTTCTTTTGGTGCTAAGCAGGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGACTAATCTATATCACAAGATTTCTTTTGGTGCTAAGCAGGAAGT  800

seq1  CTTGTGCAAACATGGAGCACTTGAGATAGAGAACAGCCATCAGGAAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCAAACATGGAGCACTTGAGATAGAGAACAGCCATCAGGAAAGAC  850

seq1  ATAGACCCACCTCTGACCATGGCTGATGGGTGAATCCCTTGAGAGGGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCCACCTCTGACCATGGCTGATGGGTGAATCCCTTGAGAGGGCTT  900

seq1  CTTAGTAGTGTTACAATACATTCACCAAGCTGGCGAGAGAAGAATGAAAG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTAGTAGTGTTACAATACATTCACCAAGCTGGCGAGAG-AGAATGAAAG  949

seq1  GAAAGAGGTGAGTCTTTTAGGAGTGCATCATACCCCACATATATA-TGTT  999
      |||||| |||||||  ||||||||||||||||||||||||||||| ||||
seq2  GAAAGA-GTGAGTC--TTAGGAGTGCATCATACCCCACATATATATTGTT  996

seq1  TGGCTATGGTACCAAAAGCAGTCTTGGATGCAACAGGATCCATGTCAAAA  1049
      ||||||||||||  ||||||||||||||||||||||||| |||||| |||
seq2  TGGCTATGGTAC--AAAGCAGTCTTGGATGCAACAGGAT-CATGTC-AAA  1042

seq1  CACCTGTACCATTCTTCACAGAAATGGATAAAACAATCATAAATTCATTC  1099
      || ||||| ||||||||||||||   |||||||| ||||| || ||||||
seq2  CA-CTGTA-CATTCTTCACAGAA--TGATAAAAC-ATCAT-AAGTCATTC  1086

seq1  ACAGAGGAGCATAAAGGACCCCAAGTAGACAAAACAACCCCAAGTAAAAA  1149
       |||||||||    | |||||  |||      |||||| || |||  |||
seq2  -CAGAGGAGC---TACGACCC--AGT------AACAACACCCAGT--AAA  1122

seq1  GAATAATACT-GACAGTATCAGCATTGCTTCCTTCAAGCTATACAACAGA  1198
      |||||  ||| ||||| || |||||||| |||||| |||  |||||||||
seq2  GAATA--ACTGGACAG-ATTAGCATTGC-TCCTTC-AGC--TACAACAGA  1165

seq1  GCCATGG  1205
      | |||||
seq2  G-CATGG  1171

seq1: chr2_79173046_79174149
seq2: B6Ng01-084J03.g_68_1163 (reverse)

seq1  AAGAACACCCCACCT-AGCAGAGGACCCTGTCCCTCCCTCCCAGCACACT  49
      |||||| |||  ||| | ||||||| |||||||||||||||||||||| |
seq2  AAGAACCCCCACCCTAAACAGAGGA-CCTGTCCCTCCCTCCCAGCACA-T  48

seq1  TCAGCCTGCTGAGACATTAAGCTTGCTAAGATTGAGTATGAGTATTGAGT  99
      |||| |||||||||||||||||| ||| |||||||||||||||| |||||
seq2  TCAG-CTGCTGAGACATTAAGCTGGCT-AGATTGAGTATGAGTA-TGAGT  95

seq1  TTCTACAACTTTATACCCATTGCTCATTCTTGTTGATATATATGTACAGT  149
      ||||||||||||||||||| |||||||||||| |||||||| ||||||||
seq2  TTCTACAACTTTATACCCA-TGCTCATTCTTGGTGATATATTTGTACAGT  144

seq1  GTGTGGAATGCATTATAAAGATCTAACAGTCAACTCCATTACTTTGTGTG  199
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGTGGAATGCATTATAAAGATCTAACAGTCAACTCCATTAC-TTGTGTG  193

seq1  CTGAATTAAATAAAAAAGGATTTTGATAAAAGCAAACTGTTCAACAGATT  249
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  CTGAATTAAATAAAAAAGGATTTT-AT-AAAGCAAACTGTTCAACAGATT  241

seq1  ATTACATGATATTAGAACCCAGTTTGGTCGTGGTGGTGGGATGGGAGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGATATTAGAACCCAGTTTGGTCGTGGTGGTGGGATGGGAGCAG  291

seq1  GGCTAGAGAGTATGGCACTACATTAACCTTATAAGGTTTAAGAATATCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAGAGTATGGCACTACATTAACCTTATAAGGTTTAAGAATATCCT  341

seq1  CAAAGACAAACAATGTAAATTGTCAACATGTCTGTATCATTTATACAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAAACAATGTAAATTGTCAACATGTCTGTATCATTTATACAAAA  391

seq1  TAATGTTTGCAATGCCAGCATAAATGCTCAGGTTTGTATTTATTGAGAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTGCAATGCCAGCATAAATGCTCAGGTTTGTATTTATTGAGAGG  441

seq1  TGGTGCATATGTATTTATACAATGTGCTAACTTTCTGGCTTTTAATCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATATGTATTTATACAATGTGCTAACTTTCTGGCTTTTAATCTTC  491

seq1  TGCTTGGGCTTAGGAGGCAGAACGCCCTTATTATATTAATAGTGTTGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGCTTAGGAGGCAGAACGCCCTTATTATATTAATAGTGTTGCAT  541

seq1  CTAGTATTCTGCACAGAAAGTCATAAAATAGTTGGGCTTACCTAATGTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTCTGCACAGAAAGTCATAAAATAGTTGGGCTTACCTAATGTGA  591

seq1  ACCTCTGATGCAGCTTCCATTAAGTCACCATCTACATTCCACGGAAACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGATGCAGCTTCCATTAAGTCACCATCTACATTCCACGGAAACCC  641

seq1  GTGTTCTGAAGCAGTTGTATGGTTTCCACCCTCCTCCTGTGGGCTGTATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGAAGCAGTTGTATGGTTTCCACCCTCCTCCTGTGGGCTGTATC  691

seq1  CATTGCTATTACTCTTTGGGTGAATTTTTACTTCTTCAATGATATAAGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTATTACTCTTTGGGTGAATTTTTACTTCTTCAATGATATAAGTC  741

seq1  TCCACAAAGGGAAAATTGAACTAAATATAACAAAAAAAAAAAAAAAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAGGGAAAATTGAACTAAATATAACAAAAAAAAAAAAAAAAAAA  791

seq1  AAAAACAAAAAAAAGCATGATGCTTCATGGTGGCCCCTATTAGAATTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAAAAGCATGATGCTTCATGGTGGCCCCTATTAGAATTAAG  841

seq1  TTTCATCATCATTCTGACATCTTTATAGCTTTGAAACTTTAACCAGATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCATCATTCTGACATCTTTATAGCTTTGAAACTTTAACCAGATAG  891

seq1  CCCCAGGTTTTCTGAAAAAGGATCCTCTTTCCATGCCCATTCATCTCTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTTTTCTGAAAAAGGATCCTCTTTCCATGCCCATTCATCTCTAC  941

seq1  TGTATGACAGTTTGTACCTGTGAAGAATTTCCCACCAGAATGATGTCATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGACAGTTTGTACCTGTGAAGAATTTCCCACCAGAATGATGTCATA  991

seq1  ATTTCTAGTTAAAGACAGACTCTTCAGTTGATCTCACTGACTTCATTACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGTTAAAGACAGACTCTTCAGTTGATCTCACTGACTTCATTACA  1041

seq1  ATCTTAGTTATCTGATATGAAACAAACTCTAGCACAAGTTTCACCCTTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGTTATCTGATATGAAACAAACTCTAGCACAAGTTTCACCCTTGG  1091

seq1  AATTC  1104
      |||||
seq2  AATTC  1096