BAC Information

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BAC

Clone NameB6Ng01-084M13
Chromosome2 (Build37)
Map Location 163,231,076 - 163,356,116
singlet/doubletdoublet
Overlap gene3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2
Downstream geneHnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084M13.bB6Ng01-084M13.g
ACCDH898636DH898637
length1,1241,151
definitionDH898636|Mus musculus domesticus DNA, BAC clone: B6Ng01-084M13, 5' end.DH898637|Mus musculus domesticus DNA, BAC clone: B6Ng01-084M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,354,979 - 163,356,116)(163,231,076 - 163,232,323)
sequence
gaattcactgttagcctagcagtggttaccagtgaacacgcctttaatcc
cagcacttgagaggaaaaaacagggggacctctgagttcgaggctagtta
gggacagccagtgctacagagagaaaccttgtcttaaaaaaataaaacaa
aacaaagtaaaacaacaaaaacaaaaaaggaatttgctggttccaatgat
ccaaaagagcaagccggaatcaagagctgggacaaaaacttggacccaga
gtaaagaccttgctatgtgctatgattgtcctaccagggacaatcctgat
ggatccaaatgttagcttcttgtcactgggggtcttggacacaagcctgg
gaaccatgatgccaaggaagatgggttgtggattccagaagcaaattctt
ccagaaagcaaatatctcaaatgaaatacaaccaaactccagcgcattgg
gggaactgggtctccacgcgtaaaaggatgaggttgacgagctggacgta
gtggtgcgtttggaagggaagaaagagcagaggttcaagatcattccagg
acacagggagttccttagttgagccaagagagctttgtagtgcatgtgga
catctcaccgtttcagaatttcagaccaggatgcactagaaatgaccagt
cctaataaagattacctcagtctgcatttagctcccaccatgacacccgt
caaagaccacaggggaggcaggcacgagggtgttcttcactctaggaggt
ctttccccttttcttaacagatgtatggtcgttctactctctccttgtct
acatttcttgttcttctgagacaatgagcccaggtgccactggctcagga
cagctttggcaaccaaagtcatccagcaccctagtacctgggtgcgatgt
tttgcatgtgctcagtccagggagtgcacttttaggagtgtggccctgtg
gagtagtgttgtcactgtggggtgtggctttagaccctcatcctagctgc
ctggaagtcagaattgctagcagccttcagtggagatgtagaatcctcag
taactcctgacatgtctgcctaacactgcaggttccaccttggaggataa
aggactgaacctcggactgtaagc
gaattcacccttccagttaaaagtgagcttgagccatttaaccaaacttc
gaagaggactttataacgactcaccataagtgtatcaggtatgaaatcct
ccagagattctagggtagggggtaacgtctaaaacatattgaggggcata
agacctatattgtgctaggcagtggtggcgcacgcctttaatctcagcac
ttgggaggcagaggcagaggccgaggcaggcagatttcgaggccagcctg
gtctacagaatgagttccaggacagccagggctacacagagaaaccttgt
ctcaaaaaccaaaggggggaaaaaaagacctatattgcaactgaccacaa
acaaaacatcacacacataaacaccagagatggaggcaacacaacacact
gatttcagtacaacacacactcatacataccaagtgcttagcagtcccac
tttaaacagcttaagaaacaacacacaatacctctggataaacagcacca
gcaggggtttatttagtgacagtaaggttaatgactccctcaaaacaaaa
taggacaggccacctgaatctaaaccttagatatctgactcaacagtaac
gtaagaaacctttaatgacacaaacccgtgttaaaccaaagacagtttta
aatgagtctcataagctctactattgatgggctggcatctacagcatgac
aagtgttcaattcagttacaaatgcacatttgagtttcttgctgccacat
cgtaagcaggtctgaaatatgctgtcttataaggatgtctccatgtcccc
accgccgccagtctccaagtcattatggtttcttcagccctcagaacatt
tttaggagatttttctttgacctgcttgcctttgacaggtacatagatcc
cagtaactgacagaatgagattactgagatgccagaatagtttttattgc
agcagtgagcagaaagagatgtcttctcacagaagtgtccacgggtctgc
cgttaactaaacttctgataacctttcattggtttatagcccatgaacta
gcttttgttatcagtggtacatcatctcctggcaatgtgggacattttcc
taggattacaaggtaaactccaaggtatgcctggcctgagtcctcaagtt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_163354979_163356116
seq2: B6Ng01-084M13.b_42_1165 (reverse)

seq1  GCTTACAGGTTCAGAGGTTCAGTCCATTATCAT-CAAGGTGGGAACATGG  49
      ||||||||  || |||||||||||| ||||| | |||||| ||||| | |
seq2  GCTTACAG--TCCGAGGTTCAGTCCTTTATCCTCCAAGGT-GGAACCT-G  46

seq1  CAGTGTCTAGGCAGACATGGTTCAGGAGTTACTGAGAGTTCTACATCTTC  99
      |||||| ||||||||||||  |||||||||||||||  |||||||||| |
seq2  CAGTGT-TAGGCAGACATG--TCAGGAGTTACTGAGGATTCTACATCTCC  93

seq1  ACCTGAAGGCTGCTAGCAGAATACTGACTTCCAGGCAGCTAGGATGAGGG  149
      | |||||||||||||||  ||| |||||||||||||||||||||||||||
seq2  A-CTGAAGGCTGCTAGC--AATTCTGACTTCCAGGCAGCTAGGATGAGGG  140

seq1  TCTTAAAGCCCACA-CCCACAGTGACACACCTACTCCAACAGGGCCACAC  198
      || ||||| ||||| ||||||||||||   ||||||| ||||||||||| 
seq2  TC-TAAAG-CCACACCCCACAGTGACAACACTACTCC-ACAGGGCCACA-  186

seq1  CTCCTAAAAGTGCCACTCCCTGGACTGAGCACATGCAAAACATCGCACCC  248
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAAGTG-CACTCCCTGGACTGAGCACATGCAAAACATCGCACCC  235

seq1  AGGTACCTAGGGTGCTGGATGACTTTGGTTGCCAAAGCTGTCCTGAGCCA  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTA-CTAGGGTGCTGGATGACTTTGGTTGCCAAAGCTGTCCTGAGCCA  284

seq1  GTGGCACCTGGGCTCATTGTCTCAGAAGAACAAGAAATGTAGACAAGGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACCTGGGCTCATTGTCTCAGAAGAACAAGAAATGTAGACAAGGAG  334

seq1  AGAGTAGAACGACCATACATCTGTTAAGAAAAGGGGAAAGACCTCCTAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAACGACCATACATCTGTTAAGAAAAGGGGAAAGACCTCCTAGA  384

seq1  GTGAAGAACACCCTCGTGCCTGCCTCCCCTGTGGTCTTTGACGGGTGTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAACACCCTCGTGCCTGCCTCCCCTGTGGTCTTTGACGGGTGTCA  434

seq1  TGGTGGGAGCTAAATGCAGACTGAGGTAATCTTTATTAGGACTGGTCATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGAGCTAAATGCAGACTGAGGTAATCTTTATTAGGACTGGTCATT  484

seq1  TCTAGTGCATCCTGGTCTGAAATTCTGAAACGGTGAGATGTCCACATGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCATCCTGGTCTGAAATTCTGAAACGGTGAGATGTCCACATGCA  534

seq1  CTACAAAGCTCTCTTGGCTCAACTAAGGAACTCCCTGTGTCCTGGAATGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGCTCTCTTGGCTCAACTAAGGAACTCCCTGTGTCCTGGAATGA  584

seq1  TCTTGAACCTCTGCTCTTTCTTCCCTTCCAAACGCACCACTACGTCCAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAACCTCTGCTCTTTCTTCCCTTCCAAACGCACCACTACGTCCAGC  634

seq1  TCGTCAACCTCATCCTTTTACGCGTGGAGACCCAGTTCCCCCAATGCGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCAACCTCATCCTTTTACGCGTGGAGACCCAGTTCCCCCAATGCGCT  684

seq1  GGAGTTTGGTTGTATTTCATTTGAGATATTTGCTTTCTGGAAGAATTTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGGTTGTATTTCATTTGAGATATTTGCTTTCTGGAAGAATTTGC  734

seq1  TTCTGGAATCCACAACCCATCTTCCTTGGCATCATGGTTCCCAGGCTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATCCACAACCCATCTTCCTTGGCATCATGGTTCCCAGGCTTGT  784

seq1  GTCCAAGACCCCCAGTGACAAGAAGCTAACATTTGGATCCATCAGGATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGACCCCCAGTGACAAGAAGCTAACATTTGGATCCATCAGGATTG  834

seq1  TCCCTGGTAGGACAATCATAGCACATAGCAAGGTCTTTACTCTGGGTCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTAGGACAATCATAGCACATAGCAAGGTCTTTACTCTGGGTCCA  884

seq1  AGTTTTTGTCCCAGCTCTTGATTCCGGCTTGCTCTTTTGGATCATTGGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGTCCCAGCTCTTGATTCCGGCTTGCTCTTTTGGATCATTGGAA  934

seq1  CCAGCAAATTCCTTTTTTGTTTTTGTTGTTTTACTTTGTTTTGTTTTATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAATTCCTTTTTTGTTTTTGTTGTTTTACTTTGTTTTGTTTTATT  984

seq1  TTTTTAAGACAAGGTTTCTCTCTGTAGCACTGGCTGTCCCTAACTAGCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGACAAGGTTTCTCTCTGTAGCACTGGCTGTCCCTAACTAGCCT  1034

seq1  CGAACTCAGAGGTCCCCCTGTTTTTTCCTCTCAAGTGCTGGGATTAAAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCAGAGGTCCCCCTGTTTTTTCCTCTCAAGTGCTGGGATTAAAGG  1084

seq1  CGTGTTCACTGGTAACCACTGCTAGGCTAACAGTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCACTGGTAACCACTGCTAGGCTAACAGTGAATTC  1124

seq1: chr2_163231076_163232323
seq2: B6Ng01-084M13.g_70_1220

seq1  GAATTCACCCTTCCAGTTAAAAGTGAGCTTGAGCCATTTAACCAAACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTTCCAGTTAAAAGTGAGCTTGAGCCATTTAACCAAACTTC  50

seq1  GAAGAGGACTTTATAACGACTCACCATAAGTGTATCAGGTATGAAATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGACTTTATAACGACTCACCATAAGTGTATCAGGTATGAAATCCT  100

seq1  CCAGAGATTCTAGGGTAGGGGGTAACGTCTAAAACATATTGAGGGGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATTCTAGGGTAGGGGGTAACGTCTAAAACATATTGAGGGGCATA  150

seq1  AGACCTATATTGTGCTAGGCAGTGGTGGCGCACGCCTTTAATCTCAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTATATTGTGCTAGGCAGTGGTGGCGCACGCCTTTAATCTCAGCAC  200

seq1  TTGGGAGGCAGAGGCAGAGGCCGAGGCAGGCAGATTTCGAGGCCAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGCAGAGGCAGAGGCCGAGGCAGGCAGATTTCGAGGCCAGCCTG  250

seq1  GTCTACAGAATGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAATGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTGT  300

seq1  CTCAAAAACCAAAGGGGGGAAAAAAAGACCTATATTGCAACTGACCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAACCAAAGGGGGGAAAAAAAGACCTATATTGCAACTGACCACAA  350

seq1  ACAAAACATCACACACATAAACACCAGAGATGGAGGCAACACAACACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATCACACACATAAACACCAGAGATGGAGGCAACACAACACACT  400

seq1  GATTTCAGTACAACACACACTCATACATACCAAGTGCTTAGCAGTCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTACAACACACACTCATACATACCAAGTGCTTAGCAGTCCCAC  450

seq1  TTTAAACAGCTTAAGAAACAACACACAATACCTCTGGATAAACAGCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGCTTAAGAAACAACACACAATACCTCTGGATAAACAGCACCA  500

seq1  GCAGGGGTTTATTTAGTGACAGTAAGGTTAATGACTCCCTCAAAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGTTTATTTAGTGACAGTAAGGTTAATGACTCCCTCAAAACAAAA  550

seq1  TAGGACAGGCCACCTGAATCTAAACCTTAGATATCTGACTCAACAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGGCCACCTGAATCTAAACCTTAGATATCTGACTCAACAGTAAC  600

seq1  GTAAGAAACCTTTAATGACACAAACCCGTGTTAAACCAAAGACAG-TTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAAGAAACCTTTAATGACACAAACCCGTGTTAAACCAAAGACAGTTTTA  650

seq1  AATGAGTCTCATAAGCTCTACTATTGATGGGCTGGCATCTACAGCATGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTCTCATAAGCTCTACTATTGATGGGCTGGCATCTACAGCATGAC  700

seq1  AAGTGTTCAATTCAGTTACAAATGCACATTTGAGTTTCTTGCTGCCACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCAATTCAGTTACAAATGCACATTTGAGTTTCTTGCTGCCACAT  750

seq1  CGTAAGCAGGTCTGAAATATGCTGTCTTATAAGGATGTCTCCATGTCCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGCAGGTCTGAAATATGCTGTCTTATAAGGATGTCTCCATGTCCCC  800

seq1  ACCGCCGCCAGTCTCCAAGTCATTATGGTTTCTTCAGCCCTCAGAACATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCGCCAGTCTCCAAGTCATTATGGTTTCTTCAGCCCTCAGAACATT  850

seq1  TTTAGGAGA-TTTTCTTTGACCTGCTTGCCTTTGACAGGTACATAAGAAC  898
      ||||||||| |||||||||||||||||||||||||||||||||| ||| |
seq2  TTTAGGAGATTTTTCTTTGACCTGCTTGCCTTTGACAGGTACAT-AGATC  899

seq1  CCAGTAAACTGACAGAATGAAGATTAACTGAGATGCCAAGAATAGTTTTT  948
      ||||| ||||||||||||| ||||| ||||||||||| ||||||||||||
seq2  CCAGT-AACTGACAGAATG-AGATT-ACTGAGATGCC-AGAATAGTTTTT  945

seq1  ATTGCAAGCAGTGAGCAGAAAGAGATGTCTTCTCACAG-AGTGGCCACCG  997
      ||||| |||||||||||||||||||||||||||||||| |||| ||| ||
seq2  ATTGC-AGCAGTGAGCAGAAAGAGATGTCTTCTCACAGAAGTGTCCA-CG  993

seq1  GGTCTGCCGTTAACTAAACCTCTGATAACCTTTCATTGGTTTAAAGCACA  1047
      ||||||||||||||||||| ||||||||||||||||||||||| ||| ||
seq2  GGTCTGCCGTTAACTAAACTTCTGATAACCTTTCATTGGTTTATAGCCCA  1043

seq1  TGAACTAGCCTTTTGTTATCAGGTGTACATCATCTC--TGCCATGTGGGA  1095
      |||||||| |||||||||||||  ||||||||||||   || ||||||||
seq2  TGAACTAG-CTTTTGTTATCAGTGGTACATCATCTCCTGGCAATGTGGGA  1092

seq1  CATTTTCTTAGGGATATACAAGTAATACTCC-ATGTA-GCCTG--CTAGG  1141
      ||||||| || |||| ||||||  | ||||| | ||| |||||  ||  |
seq2  CATTTTCCTA-GGAT-TACAAGGTAAACTCCAAGGTATGCCTGGCCTGAG  1140

seq1  TCCTCAATGGTCACATCATCCACATAGACACGAGCTTGCTCGGAACAGGA  1191
      ||||||| | |                                       
seq2  TCCTCAA-GTTA--------------------------------------  1151

seq1  TCGAGGCGAGCCAGACAGAGTTCTGGTGTGCAGTGACTGAGAGTAGTCCT  1241
                                                        
seq2  --------------------------------------------------  1151

seq1  CAAGTGA  1248
             
seq2  -------  1151