BAC Information

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BAC

Clone NameB6Ng01-084P05
Chromosome2 (Build37)
Map Location 75,084,545 - 75,205,859
singlet/doubletdoublet
Overlap genenone
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
Downstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084P05.bB6Ng01-084P05.g
ACCDH898758DH898759
length1,137914
definitionDH898758|Mus musculus domesticus DNA, BAC clone: B6Ng01-084P05, 5' end.DH898759|Mus musculus domesticus DNA, BAC clone: B6Ng01-084P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,084,545 - 75,085,684)(75,204,936 - 75,205,859)
sequence
gaattcatttgcaaaacttgctaatttatgcaaatgatccttaacctgtc
agtgcctggaatctatttcacactgctcctaggtcttggtagctttggag
cctagatgggggaagccattactgcagaatttgtcggtttgtaatcatta
tagtggctattgagttgttataattttttttttaaagtagcaccactatg
aataaataaaaaatgtggttttaagtggaacagccagccaacacctaaca
ctgaaataaaataaaataaaaaattctagagattaaattaaagatggaat
tgaatggaaagatctaatatccatgtctcctgacacccctgagtaatgtt
agaagctaatgacttcttctcttgaagaaactaactggttaataatccaa
acgggggctatcagctgctgacggaggcagattcaccaagtaggcagata
aggaacttctttattttagtgaatacaaagcacaaaaaggacccaaatac
caactgaaatttttggtcagttaactgaaagacaagacaactaaaaagga
agtctgtgaagaaagggcgcataggaggctgagacagaaggatgtgattc
aagaaccacagcctgagggctggacagatggctcagtggttaagagcact
ttggactgcccttccaaatgtcctgagttcaactcccagcaactacatgg
tagctcacagccatctacaatgtgatctgatgccctcttctgatatgtct
gcagacagctacaggtactcatacatgatagatagatagatagatagata
gatagatagatagatagatagatagatagatagatagatattttaaagaa
aaagaactatagcctgaactacatagtgagaccccgtctcagcaacagtg
tggtggtgggtttctgtgtgttcacacagctgcacatatgcaaacttgtg
cacatagagagaagagggtacaatggggctacctggaatgtctgcactgt
gtgtgagtcacacatacattttacataagtcttgtcactcctcctccgag
tgaatggaatttgtgcacacttgcacaatcactgggcactgcactaaatc
agtggtggaagatctgttcagcaattttcactctcca
gaattctatctagttatggaagtagcaagttctctctctctctctctctc
tccctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgca
tgaaaggatattcaagatggaggaactctgcatttatggcatggtgaaaa
atctgaagagtctgtcaactttggttaagcccgtgcctggctgaagccct
caaaccagctttgcgtgaaccactgcagcaaggcgggttttgggcctctc
cctctgactttgaagactgggactgctccaggccagagatgtcagtgtat
atagttaactgttatggatcttacaataaaaatttgttgaaggtcattaa
acactcatctctctatgtttattactttagtcttttatttgttggtagac
atggatcgtttgatgtcaattaccaccacacttggcattttatgcagtaa
aggtccttatggttcttgatgggtaaataaacaagccagtgcaaagcctc
ggtggcaggggtctgtggttttctgtcagcttaggagcacagggacaggg
ccttctgcagctgtctcccgagagtgtcgcctggcgcagggctccgtggc
catgacccccactctcttcaccagctgcattcttgaaaatactttcagtg
accttggcaatgctgaggggagtccagcagagctatgtttttttctttcc
attaaaaaaaaactgtctaaatggatgctacttcttcagcatgaacctcg
gagagaaatgtaccctcttgttaggctagcattcatttctcatttaagga
ttatggtaggtattcttttgaaaagtcattaatggagactgagccttttg
tatcaaacccaataagatggttttctcacatctcactacacacatgatta
gatgttttctcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75084545_75085684
seq2: B6Ng01-084P05.b_48_1184

seq1  GAATTCATTTGCAAAACTTGCTAATTTATGCAAATGATCCTTAACCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCAAAACTTGCTAATTTATGCAAATGATCCTTAACCTGTC  50

seq1  AGTGCCTGGAATCTATTTCACACTGCTCCTAGGTCTTGGTAGCTTTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGGAATCTATTTCACACTGCTCCTAGGTCTTGGTAGCTTTGGAG  100

seq1  CCTAGATGGGGGAAGCCATTACTGCAGAATTTGTCGGTTTGTAATCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGGGGGAAGCCATTACTGCAGAATTTGTCGGTTTGTAATCATTA  150

seq1  TAGTGGCTATTGAGTTGTTATAATTTTTTTTTTAAAGTAGCACCACTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCTATTGAGTTGTTATAATTTTTTTTTTAAAGTAGCACCACTATG  200

seq1  AATAAATAAAAAATGTGGTTTTAAGTGGAACAGCCAGCCAACACCTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAAAAATGTGGTTTTAAGTGGAACAGCCAGCCAACACCTAACA  250

seq1  CTGAAATAAAATAAAATAAAAAATTCTAGAGATTAAATTAAAGATGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATAAAATAAAATAAAAAATTCTAGAGATTAAATTAAAGATGGAAT  300

seq1  TGAATGGAAAGATCTAATATCCATGTCTCCTGACACCCCTGAGTAATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGAAAGATCTAATATCCATGTCTCCTGACACCCCTGAGTAATGTT  350

seq1  AGAAGCTAATGACTTCTTCTCTTGAAGAAACTAACTGGTTAATAATCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAATGACTTCTTCTCTTGAAGAAACTAACTGGTTAATAATCCAA  400

seq1  ACGGGGGCTATCAGCTGCTGACGGAGGCAGATTCACCAAGTAGGCAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGGCTATCAGCTGCTGACGGAGGCAGATTCACCAAGTAGGCAGATA  450

seq1  AGGAACTTCTTTATTTTAGTGAATACAAAGCACAAAAAGGACCCAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTCTTTATTTTAGTGAATACAAAGCACAAAAAGGACCCAAATAC  500

seq1  CAACTGAAATTTTTGGTCAGTTAACTGAAAGACAAGACAACTAAAAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAAATTTTTGGTCAGTTAACTGAAAGACAAGACAACTAAAAAGGA  550

seq1  AGTCTGTGAAGAAAGGGCGCATAGGAGGCTGAGACAGAAGGATGTGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGAAGAAAGGGCGCATAGGAGGCTGAGACAGAAGGATGTGATTC  600

seq1  AAGAACCACAGCCTGAGGGCTGGACAGATGGCTCAGTGGTTAAGAGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCACAGCCTGAGGGCTGGACAGATGGCTCAGTGGTTAAGAGCACT  650

seq1  TTGGACTGCCCTTCCAAATGTCCTGAGTTCAACTCCCAGCAACTACATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTGCCCTTCCAAATGTCCTGAGTTCAACTCCCAGCAACTACATGG  700

seq1  TAGCTCACAGCCATCTACAATGTGATCTGATGCCCTCTTCTGATATGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCACAGCCATCTACAATGTGATCTGATGCCCTCTTCTGATATGTCT  750

seq1  GCAGACAGCTACAGGTACTCATACATGATAGATAGATAGATAGATAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGCTACAGGTACTCATACATGATAGATAGATAGATAGATAGATA  800

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTTTAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTTTAAAGAA  850

seq1  AAAGAACTATAGCCTGAACTACATAGTGAGACCCCGTCTCAGCAACAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTATAGCCTGAACTACATAGTGAGACCCCGTCTCAGCAACAGTG  900

seq1  TGGTGGTGGGTTTCTGTGTGTTCACACAGCTGCACATATGCATACTTGTG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGTGGTGGGTTTCTGTGTGTTCACACAGCTGCACATATGCAAACTTGTG  950

seq1  CACATAGAGAGAAGAGGGGTACAATGGGGCTACCTGGAATGTCTGCACTG  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACATAGAGAGAAGA-GGGTACAATGGGGCTACCTGGAATGTCTGCACTG  999

seq1  TGTGTGAGTCCACACATACATTTTACATAAAGTCTTGTCACTCCT-CTCC  1049
      ||||||||| |||||||||||||||||| |||||||||||||||| ||||
seq2  TGTGTGAGT-CACACATACATTTTACAT-AAGTCTTGTCACTCCTCCTCC  1047

seq1  GAGTTGATTGGATTTGGTGCACACTTGCAC-ATCACT-GGCACTGCACCT  1097
      ||| ||| |||| || |||||||||||||| |||||| ||||||||| ||
seq2  GAG-TGAATGGAATTTGTGCACACTTGCACAATCACTGGGCACTGCA-CT  1095

seq1  TAATCAGTGGTTTGGAGAACATGTTCAGCCATTTTCAC-CTCCA  1140
       |||||||||  ||||  |  |||||||| |||||||| |||||
seq2  AAATCAGTGG--TGGAAGATCTGTTCAGCAATTTTCACTCTCCA  1137

seq1: chr2_75204936_75205859
seq2: B6Ng01-084P05.g_69_982 (reverse)

seq1  GATGAGAAAACATCTAATCATGTGTGTAGTGAGATGCTGAGGAAAACCAT  50
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  GATGAGAAAACATCTAATCATGTGTGTAGTGAGATG-TGA-GAAAACCAT  48

seq1  CTTCATTTGGGTTTGATACAAAAAGGCTCAGTCTCCATTAAATGACTTAT  100
      |||   ||||||||||||| ||||||||||||||||||| |||||||| |
seq2  CTT--ATTGGGTTTGATAC-AAAAGGCTCAGTCTCCATT-AATGACTTTT  94

seq1  CAAAATAGAATACCCTACCATAATCCTTAAATGAGAAATGACTGCTAGCC  150
      ||||  |||||| |||||||||||||||||||||||||||| ||||||||
seq2  CAAA--AGAATA-CCTACCATAATCCTTAAATGAGAAATGAATGCTAGCC  141

seq1  TAACAAGAGGGTACATTTCTCTCCGAGGTTCATGCTGAAGAAGTAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGAGGGTACATTTCTCTCCGAGGTTCATGCTGAAGAAGTAGCATC  191

seq1  CATTTTAGACAGTTTTTTTTTTAATGGAAAGAAAAAAACATAGCTCTGCT  250
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CA-TTTAGACAG-TTTTTTTTTAATGGAAAGAAAAAAACATAGCTCTGCT  239

seq1  GGACTCCCCTCAGCATTGCCAAGGTCACTG-AAGTATTTTCAAGAATGCA  299
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGACTCCCCTCAGCATTGCCAAGGTCACTGAAAGTATTTTCAAGAATGCA  289

seq1  GCTGGTGAAGAGAGTGGGGGTCATGGCCACGGAGCCCTGCGCCAGGCGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAAGAGAGTGGGGGTCATGGCCACGGAGCCCTGCGCCAGGCGAC  339

seq1  ACTCTCGGGAGACAGCTGCAGAAGGCCCTGTCCCTGTGCTCCTAAGCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCGGGAGACAGCTGCAGAAGGCCCTGTCCCTGTGCTCCTAAGCTGA  389

seq1  CAGAAAACCACAGACCCCTGCCACCGAGGCTTTGCACTGGCTTGTTTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACCACAGACCCCTGCCACCGAGGCTTTGCACTGGCTTGTTTATT  439

seq1  TACCCATCAAGAACCATAAGGACCTTTACTGCATAAAATGCCAAGTGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATCAAGAACCATAAGGACCTTTACTGCATAAAATGCCAAGTGTGG  489

seq1  TGGTAATTGACATCAAACGATCCATGTCTACCAACAAATAAAAGACTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTGACATCAAACGATCCATGTCTACCAACAAATAAAAGACTAAA  539

seq1  GTAATAAACATAGAGAGATGAGTGTTTAATGACCTTCAACAAATTTTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAACATAGAGAGATGAGTGTTTAATGACCTTCAACAAATTTTTAT  589

seq1  TGTAAGATCCATAACAGTTAACTATATACACTGACATCTCTGGCCTGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATCCATAACAGTTAACTATATACACTGACATCTCTGGCCTGGAG  639

seq1  CAGTCCCAGTCTTCAAAGTCAGAGGGAGAGGCCCAAAACCCGCCTTGCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCAGTCTTCAAAGTCAGAGGGAGAGGCCCAAAACCCGCCTTGCTG  689

seq1  CAGTGGTTCACGCAAAGCTGGTTTGAGGGCTTCAGCCAGGCACGGGCTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTCACGCAAAGCTGGTTTGAGGGCTTCAGCCAGGCACGGGCTTA  739

seq1  ACCAAAGTTGACAGACTCTTCAGATTTTTCACCATGCCATAAATGCAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTTGACAGACTCTTCAGATTTTTCACCATGCCATAAATGCAGAG  789

seq1  TTCCTCCATCTTGAATATCCTTTCATGCACACACACACACACACACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCATCTTGAATATCCTTTCATGCACACACACACACACACACACAC  839

seq1  ACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTTG  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACACACACAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAACTTG  889

seq1  CTACTTCCATAACTAGATAGAATTC  924
      |||||||||||||||||||||||||
seq2  CTACTTCCATAACTAGATAGAATTC  914