BAC Information

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BAC

Clone NameB6Ng01-085C05
Chromosome2 (Build37)10 (Build37)
Map Location 22,707,161 - 22,708,42787,674,206 - 87,674,433
singlet/doubletsingletsinglet
Overlap geneApbb1ip
Upstream geneGpr158, LOC637235, Myo3a, LOC100041703, Myo3a, Gad2
Downstream genePdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085C05.bB6Ng01-085C05.g
ACCDH898890DH898891
length1,246979
definitionDH898890|Mus musculus domesticus DNA, BAC clone: B6Ng01-085C05, 5' end.DH898891|Mus musculus domesticus DNA, BAC clone: B6Ng01-085C05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,707,161 - 22,708,427)(87,674,206 - 87,674,433)
sequence
gaattcttgcaactgagctacacacctgtgcatcactaaatctcccagtt
tctgtttttgtaaaaatggagtaatagtttgattttacagtataatttta
ttgtaagaagccagacatgggtggcttctgctcataatttcagcacttga
ggaggctgaagcaggagaattgccacaagtatgaggccagcttaggttag
taagttccaggaaagaatggtatacagaatgaaaccctaaaaaccaaagc
caaaaccaaaaccaatgacaactacccaaaagcaaaacaaaaaagagaat
taatattttatcaccattaaatagtaagattattatataattttacatat
aaaataagttaatattttaagttttcaaacacaagaaatgtcatgattaa
tactataataagcggggaaaagaacattttctgggtgtgtagatgttcaa
attttgcatagaaatgtataattctcaataattaaaaaaagcaatgggat
agatttcatattattttttatctttttgcttggatgctcaaagttatcat
tttcttttagtattataattatcagcatagtttcataaatgcaaaataat
ttaattttgcatcctccaaagtaaacctctgtgtaggagagctggagaac
ggggctgttcacatttctcccagtgacttctggttcaggtagcagttggc
ttgccaaccatatattaaatatttggatttttggcccgaagatgacagca
gaacaatgcacataataggttttgtgttttcattcacattcagctgtgca
tactttcgaaatcaaaccccaagggctattcatgcaactgtatcaatcca
cacacaaagcacgtgttctcctgtagacaattaatttctaatcatcagct
aaagcaaaggaatgtggcagaaaatatttattttccatgacagtcggtct
ctattatcactagacatgtcagattcttcctgtccttgcttttggggaca
ttggtgtttcattttcatcaattaaactagggcagtgtttcccaaccttc
ctaatgtgtgacacttaataacagcttcctcctggtcaggtgaacactga
cataaaataatttttgttgcttacttcctaaccataatttgctactgttg
caaattaattaatactgaatgcagggatgcattcttccttaccaactgac
tatcagcataggtttatccaacacagttatttacatgtgaaatatc
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tcctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcaga
tgctggcgtggatgtggagaaagaggaacactcctccattgttggtggga
gtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaa
aactggacatagtactaccggaggatccagcaatacctctcctgggcata
tatccagaagatgccccaactggtaagaaggacacatgctccactatgtt
catagcagccttatttataatagccagaagctggaaagaacctagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatctacacaatggag
tactactcagctattaaaaagaatgaatttatgaaattcctagccagatg
gatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaa
actcacacaatatgtactcactgataagtggatattagccccaaacctag
gatacccaagatataagatataatttgctaaacacatgaaactcaagaag
aatgaagactgaagtgtggacactatgcccctccttagatttgggaacaa
aacacccatggaaggagttacagagacaaagtttggagctgagatgaaag
gatggaccatgtagagactgccatatccagggatccaccccataatcagc
atccaaacgctgacaccattgcatacactagcaagattttattgaaagga
cccagatgtagctgtcttcttgtgagactatgccggggcctagcaaacac
agaagtggatgctcacagtcagctaatggatggatcatagggctcccaat
ggaggagctagagaaagtagcctaggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_22707161_22708427
seq2: B6Ng01-085C05.b_43_1288 (reverse)

seq1  GATATTTCACAATGTATAATTACATGTTGTTTTGTGATTAATCACTATGC  50
      |||||||||| ||||| ||| ||    ||| ||| ||| ||   ||||||
seq2  GATATTTCAC-ATGTA-AATAAC----TGTGTTG-GATAAA--CCTATGC  41

seq1  TTTAATTATGTTCAGTTTGTAATGATGAAAATGCAT-CCTGCATATCAGT  99
           | ||  |||||| |||| ||  | ||||||| ||||||| |||||
seq2  -----TGATAGTCAGTTGGTAAGGA--AGAATGCATCCCTGCAT-TCAGT  83

seq1  TATTTACATTAAT--ATTTGCAACAGTAGCAAAATTATAGTTATGAAGT-  146
             ||||||  ||||||||||||||| ||||||| |||| ||||| 
seq2  -------ATTAATTAATTTGCAACAGTAGC-AAATTATGGTTAGGAAGTA  125

seq1  AGCAACAAAAATAATTTTATGTCAGGTGTCACCCTGA-CAGGAGG-AGCT  194
      |||||||||||| ||||||||||| ||||   ||||| ||||||| ||||
seq2  AGCAACAAAAATTATTTTATGTCA-GTGTTCACCTGACCAGGAGGAAGCT  174

seq1  GTATTAAAGTGTCACACATTAGGAAGGTTGAG-AACACTGCCCTAGTATG  243
      ||  | |||||||||||||||||||||||| | |||||||||||||| | 
seq2  GTTATTAAGTGTCACACATTAGGAAGGTTGGGAAACACTGCCCTAGT-TT  223

seq1  AATTGATGAAAATGAAACACCAATGTCCCCAAAAGCAAGGACAGGAAGAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGAAAATGAAACACCAATGTCCCCAAAAGCAAGGACAGGAAGAA  273

seq1  TTCTGACATGTCTAGTGATAATAGAGACCGACTGTCATGGAAAATAAATA  343
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTGACATGTCTAGTGATAATAGAGACCGACTGTCATGGAAAATAAATA  322

seq1  TTTTCCTGCCACATTCCTTTGCTTTAGCTGATGATTAGAAATTAATTGTC  393
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTT-CTGCCACATTCCTTTGCTTTAGCTGATGATTAGAAATTAATTGTC  371

seq1  TACAGGAGAACACCTGC-TTGTGTGTGGATTGATACAGTTGCATGAATAG  442
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  TACAGGAGAACACGTGCTTTGTGTGTGGATTGATACAGTTGCATGAATAG  421

seq1  CCCTTGGGGTTTGATTTCGAAAGTATGCACAGCTGAATGTGAATGAAAAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGGTTTGATTTCGAAAGTATGCACAGCTGAATGTGAATGAAAAC  471

seq1  ACAAAACCTATTATGTGCATTGTTCTGCTGTCATCTTCGGGCCAAAAATC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCTATTATGTGCATTGTTCTGCTGTCATCTTCGGGCCAAAAATC  521

seq1  CAAATATTTAATATATGGTTGGCAAGCCAACTGCTACCTGAACCAGAAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTAATATATGGTTGGCAAGCCAACTGCTACCTGAACCAGAAGT  571

seq1  CACTGGGAGAAATGTGAACAGCCCCGTTCTCCAGCTCTCCTACACAGAGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAGAAATGTGAACAGCCCCGTTCTCCAGCTCTCCTACACAGAGG  621

seq1  TTTACTTTGGAGGATGCAAAATTAAATTATTTTGCATTTATGAAACTATG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGGAGGATGCAAAATTAAATTATTTTGCATTTATGAAACTATG  671

seq1  CTGATAATTATAATACTAAAAGAAAATGATAACTTTGAGCATCCAAGCAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAATTATAATACTAAAAGAAAATGATAACTTTGAGCATCCAAGCAA  721

seq1  AAAGATAAAAAATAATATGAAATCTATCCCATTGCTTTTTTTAATTATTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAAAAATAATATGAAATCTATCCCATTGCTTTTTTTAATTATTG  771

seq1  AGAATTATACATTTCTATGCAAAATTTGAACATCTACACACCCAGAAAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATACATTTCTATGCAAAATTTGAACATCTACACACCCAGAAAAT  821

seq1  GTTCTTTTCCCCGCTTATTATAGTATTAATCATGACATTTCTTGTGTTTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTCCCCGCTTATTATAGTATTAATCATGACATTTCTTGTGTTTG  871

seq1  AAAACTTAAAATATTAACTTATTTTATATGTAAAATTATATAATAATCTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAAAATATTAACTTATTTTATATGTAAAATTATATAATAATCTT  921

seq1  ACTATTTAATGGTGATAAAATATTAATTCTCTTTTTTGTTTTGCTTTTGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTAATGGTGATAAAATATTAATTCTCTTTTTTGTTTTGCTTTTGG  971

seq1  GTAGTTGTCATTGGTTTTGGTTTTGGCTTTGGTTTTTAGGGTTTCATTCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGTCATTGGTTTTGGTTTTGGCTTTGGTTTTTAGGGTTTCATTCT  1021

seq1  GTATACCATTCTTTCCTGGAACTTACTAACCTAAGCTGGCCTCATACTTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCATTCTTTCCTGGAACTTACTAACCTAAGCTGGCCTCATACTTG  1071

seq1  TGGCAATTCTCCTGCTTCAGCCTCCTCAAGTGCTGAAATTATGAGCAGAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATTCTCCTGCTTCAGCCTCCTCAAGTGCTGAAATTATGAGCAGAA  1121

seq1  GCCACCCATGTCTGGCTTCTTACAATAAAATTATACTGTAAAATCAAACT  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCATGTCTGGCTTCTTACAATAAAATTATACTGTAAAATCAAACT  1171

seq1  ATTACTCCATTTTTACAAAAACAGAAACTGGGAGATTTAGTGATGCACAG  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCCATTTTTACAAAAACAGAAACTGGGAGATTTAGTGATGCACAG  1221

seq1  GTGTGTAGCTCAGTTGCAAGAATTC  1267
      |||||||||||||||||||||||||
seq2  GTGTGTAGCTCAGTTGCAAGAATTC  1246

seq1: chr10_87674206_87674433
seq2: B6Ng01-085C05.g_681_908 (reverse)

seq1  AAATCTTGCTAGTGTATGCAATGGTTTCAGCGTTTGGAGGCTGATTATGG  50
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  AAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGG  50

seq1  GATGGATCCCTGGATATGGCATTCTCTAGATGGTCCATCCTTTTGTCTCA  100
      | ||||||||||||||||||| |||||| ||||||||||||||  |||||
seq2  GGTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCA  100

seq1  GCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAA  150

seq1  TCTAAGAAGGGGCAAAGTGTCCACACTTTGGTCTTTGTTCTTCTTGAGTT  200
      |||||| ||||||| |||||||||||||  |||||  |||||||||||||
seq2  TCTAAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTT  200

seq1  TCATGTGTTTCGCAAATTGTATCTTATA  228
      |||||||||| ||||||| |||||||||
seq2  TCATGTGTTTAGCAAATTATATCTTATA  228