BAC Information

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BAC

Clone NameB6Ng01-085C08
Chromosome2 (Build37)
Map Location 131,927,620 - 132,048,338
singlet/doubletdoublet
Overlap geneSlc23a2, LOC100043470, EG329521
Upstream geneLOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, LOC626513
Downstream gene5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085C08.bB6Ng01-085C08.g
ACCDH898896DH898897
length8761,171
definitionDH898896|Mus musculus domesticus DNA, BAC clone: B6Ng01-085C08, 5' end.DH898897|Mus musculus domesticus DNA, BAC clone: B6Ng01-085C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,927,620 - 131,928,494)(132,047,169 - 132,048,338)
sequence
gaattctaggaagaagaaaaaaaaaacagctaaggcattcctataatgtg
cattaaccctgagcttccggatagatcatttccatcaatggaagcgttct
ctacctgccctgtccagctgatatttgtaggcatctggcacttaaaaagt
ggcttgtgccaatgcagaaatgaattttaattaaaatttaagacaatgca
gatatagccaatttatcacaaataaaaggtgacttaaataattctaaatc
ctctacctatgctatggaaggcagaaggcgttcaacatctaataaaagat
aaaaataaccacatggctatgtagacttcaagcaaaacaagagcatgcgt
tctcagttcgtaagaaccacaaaatgggagtcagagcagtcatgcttaac
taggtaacataaatacacttcagaagaaaacccagggcctccctctaaat
acctaaagagaaggtacacaaggcgtgggaagagagagagatcaccacta
ctaaatccgagatggatatgacaaggctgaagaatctaagagatggaaat
attcaacaaagaaacacccaatatcccaaacttaaaaaaaaaaagaaaag
aaaaattcaaaagcagaaagatcttgcaacaattaggtagataacacttc
aaaggagaaaaaaaattaaaacaatttcaaaccacgaaacataacctgga
caatacagctaatccaccggggattaacaaacatgtgaaaaacctgtctt
caaagatgagaacgcacaaagcatacaagcaagggctggcacacatacaa
cacaacaagccccagtgtgcctggctctatatgaagcaagactgacatga
gtgggcgggggggggcgggggggcgg
gaattcttttttaaaatcgcctttactagttgggtgttagttgggtgttg
gtagcacacaccttcaatttccacactggtgaggcagaggcaagtgatct
cttcaagttccagcctggccaacaggcagagtttcaagatagccaagact
acatataaaaggattctgtcttgaaaaaacaaaaacaaaaatcagttggg
tagcggtggtgtactctggaggcagaggcaagcgggtctctataagttca
aagcccagcttggtcttcagagtgagttccagggtagccaggagtacaca
gtgaaaccctgtctcgaaaaacaaacaaataaaacaataaacaacaacaa
caaacagttttcctagggcacaattgccataaaatagactcaaccctaac
ttcacagctagaggaatgcagatatatgtgtatatgtgtatatgtgtata
ttagcattctacagaactttaaaattatgctttaaaagcatactgttgca
cttcctaaatcactcacatttatttatccatttatttattacctctttat
ttacagtgtgcgtgtgtgcgtgcagctgcacactgtggcctgtgtgtgtg
gcaaagacagctgggggagtctgctcgtctcctcccgtgtgggatgaggg
gaagctagcacagactgtcatgtctgagccatgacgctggtccgacatta
gcacttcaagtcgcaggtctgtagtgttaacaagcacactgctgtgcact
ttgcctctagaaccctttcatcctgcagagcaagcttgtgcacagtcaac
tcggtcaacgccagttcccttttccccctcctggggagaagattcttttt
gagtcacccttgtaagtagagcgttcaggatatttaaagaactcctgaaa
tgatctcaaaatacagctgcttccaaaaagagccagtgaatcattcccgg
gctcatgagagtgcaaatttaaaacaccactcaggttgacaaaaatggga
gaggatattcaggaactgctgttgttgaatctccttctgctcaggtttga
ttggtacggcagggcctgcttccaatttctttctggcgtcagcatggtct
tccatggttctctctcttctccacgcaggcgtgcaaagcacatggaatat
gaaacgggcgctttttttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131927620_131928494
seq2: B6Ng01-085C08.b_47_922

seq1  GAATTCTAGGAAGAAGAAAAAAAAAACAGCTAAGGCATTCCTATAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAAGAAGAAAAAAAAAACAGCTAAGGCATTCCTATAATGTG  50

seq1  CATTAACCCTGAGCTTCCGGATAGATCATTTCCATCAATGGAAGCGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCCTGAGCTTCCGGATAGATCATTTCCATCAATGGAAGCGTTCT  100

seq1  CTACCTGCCCTGTCCAGCTGATATTTGTAGGCATCTGGCACTTAAAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGCCCTGTCCAGCTGATATTTGTAGGCATCTGGCACTTAAAAAGT  150

seq1  GGCTTGTGCCAATGCAGAAATGAATTTTAATTAAAATTTAAGACAATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGCCAATGCAGAAATGAATTTTAATTAAAATTTAAGACAATGCA  200

seq1  GATATAGCCAATTTATCACAAATAAAAGGTGACTTAAATAATTCTAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGCCAATTTATCACAAATAAAAGGTGACTTAAATAATTCTAAATC  250

seq1  CTCTACCTATGCTATGGAAGGCAGAAGGCGTTCAACATCTAATAAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTATGCTATGGAAGGCAGAAGGCGTTCAACATCTAATAAAAGAT  300

seq1  AAAAATAACCACATGGCTATGTAGACTTCAAGCAAAACAAGAGCATGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACCACATGGCTATGTAGACTTCAAGCAAAACAAGAGCATGCGT  350

seq1  TCTCAGTTCGTAAGAACCACAAAATGGGAGTCAGAGCAGTCATGCTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTCGTAAGAACCACAAAATGGGAGTCAGAGCAGTCATGCTTAAC  400

seq1  TAGGTAACATAAATACACTTCAGAAGAAAACCCAGGGCCTCCCTCTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACATAAATACACTTCAGAAGAAAACCCAGGGCCTCCCTCTAAAT  450

seq1  ACCTAAAGAGAAGGTACACAAGGCGTGGGAAGAGAGAGAGATCACCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGAGAAGGTACACAAGGCGTGGGAAGAGAGAGAGATCACCACTA  500

seq1  CTAAATCCGAGATGGATATGACAAGGCTGAAGAATCTAAGAGATGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCCGAGATGGATATGACAAGGCTGAAGAATCTAAGAGATGGAAAT  550

seq1  ATTCAACAAAGAAACACCCAATATCCCAAACTTAAAAAAAAAAAGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACAAAGAAACACCCAATATCCCAAACTTAAAAAAAAAAAGAAAAG  600

seq1  AAAAATTCAAAAGCAGAAAGATCTTGCAACAATTAGGTAGATAACACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCAAAAGCAGAAAGATCTTGCAACAATTAGGTAGATAACACTTC  650

seq1  AAAGGAG-AAAAAAATTAAAACAATTTCAAACCACGAAACATAACCTGGA  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAAAAAAAATTAAAACAATTTCAAACCACGAAACATAACCTGGA  700

seq1  CAATACAGCTAATCCACCGGGGATTAACAAACATGTGAAAAACCTGTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGCTAATCCACCGGGGATTAACAAACATGTGAAAAACCTGTCTT  750

seq1  CAAAGATGAGAACGCACAAAGCATACAAGCAAGGGCTGGCACACATACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGAGAACGCACAAAGCATACAAGCAAGGGCTGGCACACATACAA  800

seq1  CACAACAAGCCCCAGTGTGCCTGGCTCTATATGAAGCAAGACTGACATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAGCCCCAGTGTGCCTGGCTCTATATGAAGCAAGACTGACATGA  850

seq1  GTGGGCGGGGGGGGGCGGGGGGGCGG  875
      ||||||||||||||||||||||||||
seq2  GTGGGCGGGGGGGGGCGGGGGGGCGG  876

seq1: chr2_132047169_132048338
seq2: B6Ng01-085C08.g_72_1242 (reverse)

seq1  GAAAAAAAAACGACCCAGCTCATAATCACTGGTGC-TTGCA-GCCTGC-T  47
      ||||||||||   |||   ||||| || |  |||| ||||| |||||| |
seq2  GAAAAAAAAAGCGCCCGTTTCATATTC-CATGTGCTTTGCACGCCTGCGT  49

seq1  GGAGAAGGGAGAGAACACTGG-AGACCATGCTGACG-CAGAAAG-AATGG  94
      ||||||| ||||||||  ||| |||||||||||||| ||||||| ||| |
seq2  GGAGAAGAGAGAGAACCATGGAAGACCATGCTGACGCCAGAAAGAAATTG  99

seq1  GATGCAGGCCTGGCCGTACCATTCAAACCCTGGGCAG-AGGAGTATTCAA  143
      || |||||||  ||||||||| ||||| |||| |||| ||||| ||||||
seq2  GAAGCAGGCCCTGCCGTACCAATCAAA-CCTGAGCAGAAGGAG-ATTCAA  147

seq1  C-ACAGCAGTTCCTGAATATCCCTTCTCCATTTTTGTCAACTTGAGTGGT  192
      | ||||||||||||||||||||  || |||||||||||||| ||||||||
seq2  CAACAGCAGTTCCTGAATATCCTCTC-CCATTTTTGTCAACCTGAGTGGT  196

seq1  GTTTTTAAATTTTGCACTCTCATGAGCCC-GGAATGATTCACTGGCTCTT  241
      |||||  || ||||||||||||||||||| ||||||||||||||||||||
seq2  GTTTT--AAATTTGCACTCTCATGAGCCCGGGAATGATTCACTGGCTCTT  244

seq1  TTTGGAAGCAGCTGTATTTTGAGATCATTTTCAGGAGTTCTTTAAATATC  291
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGGAAGCAGCTGTATTTTGAGATCA-TTTCAGGAGTTCTTTAAATATC  293

seq1  CTGAACGCTCTACTTACAAGGGTGACTCAAAAAGAATCTTCTCCCCAGGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGAACGCTCTACTTACAAGGGTGACTCAAAAAGAATCTTCTCCCCA-GG  342

seq1  AGGGGGAAAAGGGAACTGGCGTTGACCGAGTTGACTGTGCACAAGCTTGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAAAGGGAACTGGCGTTGACCGAGTTGACTGTGCACAAGCTTGC  392

seq1  TCTGCAGGATGAAAGGGTTCTAGAGGCAAAGTGCACAGCAGTGTGCTTGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGATGAAAGGGTTCTAGAGGCAAAGTGCACAGCAGTGTGCTTGT  442

seq1  TAACACTACAGACCTGCGACTTGAAGTGCTAATGTCGGACCAGCGTCATG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTACAGACCTGCGACTTGAAGTGCTAATGTCGGACCAGCGTCATG  492

seq1  GCTCAGACATGACAGTCTGTGCTAGCTTCCCCTCATCCCACACGGGAGGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGACATGACAGTCTGTGCTAGCTTCCCCTCATCCCACACGGGAGGA  542

seq1  GACGAGCAGACTCCCCCAGCTGTCTTTGCCACACACACAGGCCACAGTGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGCAGACTCCCCCAGCTGTCTTTGCCACACACACAGGCCACAGTGT  592

seq1  GCAGCTGCACGCACACACGCACACTGTAAATAAAGAGGTAATAAATAAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCACGCACACACGCACACTGTAAATAAAGAGGTAATAAATAAAT  642

seq1  GGATAAATAAATGTGAGTGATTTAGGAAGTGCAACAGTATGCTTTTAAAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATAAATGTGAGTGATTTAGGAAGTGCAACAGTATGCTTTTAAAG  692

seq1  CATAATTTTAAAGTTCTGTAGAATGCTAATATACACATATACACATATAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTAAAGTTCTGTAGAATGCTAATATACACATATACACATATAC  742

seq1  ACATATATCTGCATTCCTCTAGCTGTGAAGTTAGGGTTGAGTCTATTTTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATCTGCATTCCTCTAGCTGTGAAGTTAGGGTTGAGTCTATTTTA  792

seq1  TGGCAATTGTGCCCTAGGAAAACTGTTTGTTGTTGTTGTTTATTGTTTTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATTGTGCCCTAGGAAAACTGTTTGTTGTTGTTGTTTATTGTTTTA  842

seq1  TTTGTTTGTTTTTCGAGACAGGGTTTCACTGTGTACTCCTGGCTACCCTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTTCGAGACAGGGTTTCACTGTGTACTCCTGGCTACCCTG  892

seq1  GAACTCACTCTGAAGACCAAGCTGGGCTTTGAACTTATAGAGACCCGCTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGAAGACCAAGCTGGGCTTTGAACTTATAGAGACCCGCTT  942

seq1  GCCTCTGCCTCCAGAGTACACCACCGCTACCCAACTGATTTTTGTTTTTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCAGAGTACACCACCGCTACCCAACTGATTTTTGTTTTTG  992

seq1  TTTTTTCAAGACAGAATCCTTTTATATGTAGTCTTGGCTATCTTGAAACT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAAGACAGAATCCTTTTATATGTAGTCTTGGCTATCTTGAAACT  1042

seq1  CTGCCTGTTGGCCAGGCTGGAACTTGAAGAGATCACTTGCCTCTGCCTCA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTTGGCCAGGCTGGAACTTGAAGAGATCACTTGCCTCTGCCTCA  1092

seq1  CCAGTGTGGAAATTGAAGGTGTGTGCTACCAACACCCAACTAACACCCAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGGAAATTGAAGGTGTGTGCTACCAACACCCAACTAACACCCAA  1142

seq1  CTAGTAAAGGCGATTTTAAAAAAGAATTC  1170
      |||||||||||||||||||||||||||||
seq2  CTAGTAAAGGCGATTTTAAAAAAGAATTC  1171