BAC Information

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BAC

Clone NameB6Ng01-085E09
Chromosome2 (Build37)
Map Location 102,949,870 - 103,092,650
singlet/doubletdoublet
Overlap genenone
Upstream geneLdlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
Downstream geneEhf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085E09.bB6Ng01-085E09.g
ACCDH898994DH898995
length1,0721,001
definitionDH898994|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E09, 5' end.DH898995|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,949,870 - 102,950,936)(103,091,635 - 103,092,650)
sequence
gaattcactagaagtcacagtgtatgcaaagatatgaggtaagatatcgg
gacctgggatgcaggtgaggaagcctcttggctaatctgtgtaaagctag
cctttgggtgaactttagggtcaactcacttcttctcaattagaaactgg
tcaatgacaacagatacagtctctagtttgactcaacaattgtaatgtcc
tcagtctgttttagcacattctctactgtgcccaggtggtcccaggtctc
acccaacctaaacaaacaccttacagccttatgaattaagtatcccatag
aagtctgcctataactcctgtacccattgccttaaaaaaaaaaaaaaggc
cccagtcagtaagtgtcagcattactacatccactacagggctttccctt
gctgtgtgtgctggtcagaaagctcagtgtttgcatgtttacaatactat
gttgctgatggatttttaaatcctcccccacaaaacttggcacacatatt
gttagtatagttactagctttgcaaccagacaaagaaatgtcaactcttg
gcactcttgaaaacatttcttgtaaccagacttttagctactttattggg
ttgcgtttttctaccatcctgctccacccagtcccttccaaacccccaac
actaggtaggagagaaaggagcctggaagggaaagggagcatcattctca
ctagacatcttcctgatgcgtagggcattgagttccttggggcaagtttg
gtcttcatcatctcttcatcaacaggacatctccaaccagaagccaacaa
ccagcaaccagcaacagcaaattagcagcggcagcagcagcagcagcagc
aagagaagaaagagcagctgcaagggtagcagcaagggcagcagcagtct
ctatccttcttgggactttagcatttttatgcctcccagagttcccagaa
ttccaatatcatgcacttgtagaaactatttgcagctgcaaatcactcct
cttcaagtgcatgagcagatctatagtctgctgcatggtaatctaaagcc
atttccatactaatttaaacaa
gaattctctggagtagaacagttgcatggaccccagatagtcaaacttcc
aaagaggacaaagcttgtagaggctggaaaccttgtctacagttaagatg
acaggtccctgaattacttctctgtagtagatcagttgcatgggcttcag
gtagcccttcacacttccataggcttacagcttctgaaggctgtggagtg
tgtctgcagctaagacagctggtgcctggtgatggtggaagtttccttct
caatttttcctgatgtgtgaactcttttcctctctctagaaaaaaagcca
gtcttctcaggccatctggcatacctgccacttcttggttgacattcttg
gctcccctttaaatacaattattcctctgtggtccctattccctttttgt
ggcagagatgaggactgagcaccactatccagtcttcttggatcctttcc
ctcttcctcctcctcagatgatgatgacaatgatgatgatgatgatgata
atgatgaagaagacaatgattgtgtctgtctgtgcgtctgtgtgtgttgt
gtgtgcaggtacacaggtgtgtgcaggtacacacacatgtgcgtgtggag
gtcagatgttaatgttggctatctttcatattttttgaaacaggatctct
cactgaacaagagcttgctgagcccactagactggctagccagcaagtcc
cagggaaatcctcctgtgtccgctgcttctgtactgcagtagctattgtg
ctcagcattttacattgtgtttgggacaggaacaaatcaagtctcatgct
tgcacagcaagtactttgctgactgagctatctcccaacacctctcagat
tattattaccaattttcctttattgtctgagaatttcatgcatgcgtcta
atgcatttgaccaaatccaccctcattcctcccttcatttctcctcattc
cctaacactcctcactcttagctttgggactttcctaatctactgatcta
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_102949870_102950936
seq2: B6Ng01-085E09.b_36_1095

seq1  GAATTCACTAGAAGTCACAGTGTATGCAAAGATATGAGGTAAGATATCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGAAGTCACAGTGTATGCAAAGATATGAGGTAAGATATCGG  50

seq1  GACCTGGGATGCAGGTGAGGAAGCCTCTTGGCTAATCTGTGTAAAGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGGATGCAGGTGAGGAAGCCTCTTGGCTAATCTGTGTAAAGCTAG  100

seq1  CCTTTGGGTGAACTTTAGGGTCAACTCACTTCTTCTCAATTAGAAACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGTGAACTTTAGGGTCAACTCACTTCTTCTCAATTAGAAACTGG  150

seq1  TCAATGACAACAGATACAGTCTCTAGTTTGACTCAACAATTGTAATGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACAACAGATACAGTCTCTAGTTTGACTCAACAATTGTAATGTCC  200

seq1  TCAGTCTGTTTTAGCACATTCTCTACTGTGCCCAGGTGGTCCCAGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGTTTTAGCACATTCTCTACTGTGCCCAGGTGGTCCCAGGTCTC  250

seq1  ACCCAACCTAAACAAACACCTTACAGCCTTATGAATTAAGTATCCCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCTAAACAAACACCTTACAGCCTTATGAATTAAGTATCCCATAG  300

seq1  AAGTCTGCCTATAACTCCTGTACCCATTGCCTTAAAAAAAAAAAAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGCCTATAACTCCTGTACCCATTGCCTTAAAAAAAAAAAAAAGGC  350

seq1  CCCAGTCAGTAAGTGTCAGCATTACTACATCCACTACAGGGCTTTCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCAGTAAGTGTCAGCATTACTACATCCACTACAGGGCTTTCCCTT  400

seq1  GCTGTGTGTGCTGGTCAGAAAGCTCAGTGTTTGCATGTTTACAATACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTGCTGGTCAGAAAGCTCAGTGTTTGCATGTTTACAATACTAT  450

seq1  GTTGCTGATGGATTTTTAAATCCTCCCCCACAAAACTTGGCACACATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGATGGATTTTTAAATCCTCCCCCACAAAACTTGGCACACATATT  500

seq1  GTTAGTATAGTTACTAGCTTTGCAACCAGACAAAGAAATGTCAACTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTATAGTTACTAGCTTTGCAACCAGACAAAGAAATGTCAACTCTTG  550

seq1  GCACTCTTGAAAACATTTCTTGTAACCAGACTTTTAGCTACTTTATTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTTGAAAACATTTCTTGTAACCAGACTTTTAGCTACTTTATTGGG  600

seq1  TTGCGTTTTTCTACCATCCTGCTCCACCCAGTCCCTTCCAAACCCCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTTTTTCTACCATCCTGCTCCACCCAGTCCCTTCCAAACCCCCAAC  650

seq1  ACTAGGTAGGAGAGAAAGGAGCCTGGAAGGGAAAGGGAGCATCATTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTAGGAGAGAAAGGAGCCTGGAAGGGAAAGGGAGCATCATTCTCA  700

seq1  CTAGACATCTTCCTGATGCGTAGGGGCATTGAGTTCCTTGGGGCAAGTTT  750
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTAGACATCTTCCTGATGCGTA-GGGCATTGAGTTCCTTGGGGCAAGTTT  749

seq1  GGTCTTCATCATCTCTTCATCAACAGGACATCTCCAACCAGAAGCCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCATCATCTCTTCATCAACAGGACATCTCCAACCAGAAGCCAACA  799

seq1  ACCAGCAACCAGCAACAGCAAA-TAGCAGCGGCAGCAGCAGCAGCAGCAG  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACCAGCAACCAGCAACAGCAAATTAGCAGCGGCAGCAGCAGCAGCAGCAG  849

seq1  CAAGAGAAGAAAGAGCAGCTGCAGGGGTAGCAGCAAGGGCAGCAGCAGTC  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGAGAAGAAAGAGCAGCTGCAAGGGTAGCAGCAAGGGCAGCAGCAGTC  899

seq1  TCTATCCTTCTTGGGACTTTAGCATTTTTATGCCTCCCAAGAGTTCCCAG  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTATCCTTCTTGGGACTTTAGCATTTTTATGCCTCCC-AGAGTTCCCAG  948

seq1  AATTCCAAATATCATGCACTTGTAGAAACTATTTGCAGCTGGCAAAATCA  999
      |||||| ||||||||||||||||||||||||||||||||||   ||||||
seq2  AATTCC-AATATCATGCACTTGTAGAAACTATTTGCAGCTG--CAAATCA  995

seq1  CTCCTCTTCCAGTGCATGAGGCAGATC-ATAGTCTGCTGCCATGGACAAT  1048
      ||||||||| ||||||||| ||||||| ||||||||||| |||||  |||
seq2  CTCCTCTTCAAGTGCATGA-GCAGATCTATAGTCTGCTG-CATGG-TAAT  1042

seq1  CTAAAGCCATATCCCATAC  1067
      |||||||||| | ||||||
seq2  CTAAAGCCAT-TTCCATAC  1060

seq1: chr2_103091635_103092650
seq2: B6Ng01-085E09.g_69_1069 (reverse)

seq1  GTAGATTCAGTAGGTTTAGGAAAAGACCACAAAAAGCTAAGAGTGAGGAG  50
      ||||| |||||| | ||||||||   ||    ||||||||||||||||||
seq2  GTAGA-TCAGTA-GATTAGGAAAGTCCC----AAAGCTAAGAGTGAGGAG  44

seq1  TGGTTAGGGAATGAAGGAGAAACTGAAGGGAGGAAATTGAGGGTGGATTT  100
      | ||||||||||| |||||||| ||||||||||||  |||||||||||||
seq2  T-GTTAGGGAATG-AGGAGAAA-TGAAGGGAGGAA--TGAGGGTGGATTT  89

seq1  GGTCAAAATGCATTAGACGCATGCATGAAATTCTCAGACAATAAAGGGAA  150
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTC-AAATGCATTAGACGCATGCATGAAATTCTCAGACAATAAAGGAAA  138

seq1  ATTGGTATAAATAATCTGAGAGGGTGCTTGGGAGATAGCTCAGTCAGCAA  200
      |||||||  |||||||||||| |||| |||||||||||||||||||||||
seq2  ATTGGTAATAATAATCTGAGA-GGTG-TTGGGAGATAGCTCAGTCAGCAA  186

seq1  AGTACTTGCTGTGCAAGCATGAGAACTTGGATTTGTTCCTGTCCCAAACA  250
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  AGTACTTGCTGTGCAAGCATGAG-ACTT-GATTTGTTCCTGTCCCAAACA  234

seq1  CAATGTAAAATGCTGAGCACAATAGCTACTGCAGTACAGAAGCAGCGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAAAATGCTGAGCACAATAGCTACTGCAGTACAGAAGCAGCGGAC  284

seq1  ACAGGAGGA-TTCCCTGGGACTTGCTGGCTAGCCAGTCTAGTGGGCTCAG  349
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGATTTCCCTGGGACTTGCTGGCTAGCCAGTCTAGTGGGCTCAG  334

seq1  CAAGCTCTTGTTCAGTGAGAGATCCTGTTTCAAAAAATATGAAAGATAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTTGTTCAGTGAGAGATCCTGTTTCAAAAAATATGAAAGATAGC  384

seq1  CAACATTAACATCTGACCTCCACACGCACATGTGTGTGTACCTGCACACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTAACATCTGACCTCCACACGCACATGTGTGTGTACCTGCACACA  434

seq1  CCTGTGTACCTGCACACACAACACACACAGACGCACAGACAGACACAATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTACCTGCACACACAACACACACAGACGCACAGACAGACACAATC  484

seq1  ATTGTCTTCTTCATCATTATCATCATCATCATCATCATTGTCATCATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTCTTCATCATTATCATCATCATCATCATCATTGTCATCATCAT  534

seq1  CTGAGGAGGAGGAAGAGGGAAAGGATCCAAGAAGACTGGATAGTGGTGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGGAGGAAGAGGGAAAGGATCCAAGAAGACTGGATAGTGGTGCT  584

seq1  CAGTCCTCATCTCTGCCACAAAAAGGGAATAGGGACCACAGAGGAATAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCATCTCTGCCACAAAAAGGGAATAGGGACCACAGAGGAATAAT  634

seq1  TGTATTTAAAGGGGAGCCAAGAATGTCAACCAAGAAGTGGCAGGTATGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAAAGGGGAGCCAAGAATGTCAACCAAGAAGTGGCAGGTATGCC  684

seq1  AGATGGCCTGAGAAGACTGGCTTTTTTTCTAGAGAGAGGAAAAGAGTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCTGAGAAGACTGGCTTTTTTTCTAGAGAGAGGAAAAGAGTTCA  734

seq1  CACATCAGGAAAAATTGAGAAGGAAACTTCCACCATCACCAGGCACCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGGAAAAATTGAGAAGGAAACTTCCACCATCACCAGGCACCAGC  784

seq1  TGTCTTAGCTGCAGACACACTCCACAGCCTTCAGAAGCTGTAAGCCTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGCTGCAGACACACTCCACAGCCTTCAGAAGCTGTAAGCCTATG  834

seq1  GAAGTGTGAAGGGCTACCTGAAGCCCATGCAACTGATCTACTACAGAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGAAGGGCTACCTGAAGCCCATGCAACTGATCTACTACAGAGAA  884

seq1  GTAATTCAGGGACCTGTCATCTTAACTGTAGACAAGGTTTCCAGCCTCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCAGGGACCTGTCATCTTAACTGTAGACAAGGTTTCCAGCCTCTA  934

seq1  CAAGCTTTGTCCTCTTTGGAAGTTTGACTATCTGGGGTCCATGCAACTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTGTCCTCTTTGGAAGTTTGACTATCTGGGGTCCATGCAACTGT  984

seq1  TCTACTCCAGAGAATTC  1016
      |||||||||||||||||
seq2  TCTACTCCAGAGAATTC  1001