BAC Information

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BAC

Clone NameB6Ng01-085H11
Chromosome2 (Build37)
Map Location 136,010,406 - 136,193,036
singlet/doubletdoublet
Overlap genePak7
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788, Plcb4, 6330527O06Rik
Downstream geneLOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085H11.bB6Ng01-085H11.g
ACCDH899130DH899131
length1,1851,265
definitionDH899130|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H11, 5' end.DH899131|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,010,406 - 136,011,062)(136,191,761 - 136,193,036)
sequence
gaattctcactgagatagaaattcatattacaggctatattccatgccaa
gagcaaattaatatactatactgataaatgggaattcttcagacaagata
atttaacaaggcctagagaattttggggtcagtgacactacattattctt
gaggcgtgtcaagagttaacaaccctggtgctattaacactaagtgtaaa
actcttgcctggcagaaggcgctaatctctagtgtaaacatttatctggt
ccgtacaaattccctttgacgtcactccccttgcatctgtgctaatctct
agtgttaaacatttatctggttcctttagaagtcactccttttgcacctg
gaaaaattcaatgtgccttattctgttatgatttgcaatttactctgtat
tataaaaagtctgaggctcgactggaaaattacattcagatccaacacca
cccttgagtgttcgtctctttgtcactccatccgactctttgcccatctg
cttgagagaacctgttctacgcagactcagggacccagagggtctgcggc
aagggacccgtatggaagactttggggaaggattgcagaccctgaagggg
ataggaactccacaggaagaccaagagagtcaactaacatggacccttgg
gagctctcagagactaagccaccaactaaaaagcatacaggctggacaga
ggtccctagcacatttgtagcagaagtgaagctcaatttccatatgggtc
ttccaacaactggatagggggttgtccctcaagctgtggcctgaccgtgg
aatctgtttctcaacagggctgccttgtctgacctcagtggaagatgtac
ctaaccttgaagagacttgatgtgcaagggtgaagattgctcatcttctc
agaggagaaggaagggggcatgagggagggtctctgtgagtggagttaga
tgaacagtgataggatgcaaattaataattattgacaaaagaaatttaca
ttagatatcttcaatcatttaaagatgtttagtgttctgaaacaggtttg
atttcatggtcacaagtagagtgttatttggcccactttgatattcccag
tagtcacagacagattttaaaaagtacttgaaacactttgatgaaacttg
accttccgttgtgacctggcatagatcatgctttc
gaattctcgttagaaggagggagagggtaaacatagttgatagaactggt
tattaataacattgtcaagaagagtcagagaaaggctaatgtcagggtag
aattactctcttccaagccatcttgacagagttgctgtagagaccttcag
caaagaggtctttatttttccttaatttcatctatcatgagaagcaaagt
cagtagatatggccagatcccacaaataaaacaagataaaaccagatcat
taaagtgggtaaaggcacaattgagaagtgtaattatagtctctacaaaa
atatctaacctggtgaatttctttggccacactattttggcagccccaat
gtgttgaatgattgtatttgaaactatcttgtccctggaaatgaattata
agttaccaaagatattatagatagattctttcttctcagcattttgttat
cttggcttttcctctttttctcctaatttcccattatactgatgtttcta
ttttggagcttggtaagaaatagatttgtgttgatataccaatttagact
ggagttaaaatgaaaattcatttgcatatttgaaatctaacttaatggga
gaaaaatcaatgataaaattacatcctaaaggatgttcagagaaatgaac
ttatagtgagctagtgaggaaatgtcactctaaactagtatgtaacatac
atactcagcccttatcctgtacactccccccaccttaggatttctcatat
agaatctattctctcagtgacttatgagatatgctattgtagtattctac
atagactcttgttcattataacagttcaaatttgagaaatttgtattata
aattaacattggaggtagatatgtactatcttgacttatttagttgtgga
tagatcatagtttctgttagttctgtagtcttgctatttcatgttacata
ttaaagtgatacaaccactattttgtttgtttgtgtatattcatcaatgc
ttgggaaagtagcaactttaaatcttcacttgtgattactttcaggaccc
ctgaaaacatgacacttccagtattctcttaagaactattaatcaggcta
tgtacttgtgaatatttcactgataggtactaaggacagatttcaaggcc
actctcaaatgtatagttctggcaatgacatttggcgttgggagaaagcc
ttgtccaaataatgttggacgtggctgggaggaaaagacctggggagaac
acatgtctggaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_136010406_136011062
seq2: B6Ng01-085H11.b_601_1229

seq1  CCCGTATGGAAGACTTTGGGGAAGGATTGCAGACCCTGAAGGGGATAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTATGGAAGACTTTGGGGAAGGATTGCAGACCCTGAAGGGGATAGGA  50

seq1  ACTCCACAGGAAGACCAAGAGAGTCAACTAACATGGACCCTTGGGAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACAGGAAGACCAAGAGAGTCAACTAACATGGACCCTTGGGAGCTC  100

seq1  TCAGAGACTAAGCCACCAACTAAAAAGCATACAGGCTGGACAGAGGTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACTAAGCCACCAACTAAAAAGCATACAGGCTGGACAGAGGTCCC  150

seq1  TAGCACATTTGTAGCAGAAGTGAAGCTCAATTTCCATATGGGTCTTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATTTGTAGCAGAAGTGAAGCTCAATTTCCATATGGGTCTTCCAA  200

seq1  CAACTGGATAGGGGGTTGTCCCTCAAGCTGTGGCCTGACCGTGGAATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGATAGGGGGTTGTCCCTCAAGCTGTGGCCTGACCGTGGAATCTG  250

seq1  TTTCTCAACAGGGCTGCCTTGTCTGACCTCAGTGGAAGATGTACCTAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAACAGGGCTGCCTTGTCTGACCTCAGTGGAAGATGTACCTAACC  300

seq1  TTGAAGAGACTTGATGTGCAAGGGTGAAGAATGCTCATCTTCTCAGAGGA  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGAAGAGACTTGATGTGCAAGGGTGAAGATTGCTCATCTTCTCAGAGGA  350

seq1  GAAGGGAAGGGGGCATGAGGGAGGGTCTCTGTGAGTGGAGTTAAGGATGA  400
      ||| |||||||||||||||||||||||||||||||||||||||  |||||
seq2  GAA-GGAAGGGGGCATGAGGGAGGGTCTCTGTGAGTGGAGTTA--GATGA  397

seq1  ACAGTGATAGGAATGCAAATTAATTAATTAATTGACAAAAAGAAAATTTA  450
      ||||||||||| ||||||||||| ||||| ||||||||||   |||||||
seq2  ACAGTGATAGG-ATGCAAATTAA-TAATT-ATTGACAAAA--GAAATTTA  442

seq1  CATTAGAATATCTTCAAATCATTTAAAGAATGTTTAAGTGTTCTTGAAAA  500
      |||||| |||||||| |||||||||||| |||||| ||||||||   |||
seq2  CATTAG-ATATCTTC-AATCATTTAAAG-ATGTTT-AGTGTTCT--GAAA  486

seq1  CAGGTTTGATTTTCATGGTCACAAAGTAGAGTGTTATTTGGCACCACTTT  550
      ||||||||| |||||||||||| ||||||||||||||||||| |||||||
seq2  CAGGTTTGA-TTTCATGGTCAC-AAGTAGAGTGTTATTTGGC-CCACTTT  533

seq1  GAATAGTCCCAAGTAGTCACAGACAGATTTTAAAAAAGTACCTGAGAACC  600
      | ||| |||| |||||||||||||||||||| ||||||||| |  ||| |
seq2  G-ATATTCCC-AGTAGTCACAGACAGATTTT-AAAAAGTACTT--GAAAC  578

seq1  ACTTTGGATGAAAACTTGACCTTCCTGTTGGGACCAGTGCATAGATTCAT  650
      ||||| |||| |||||||||||||| |||| |||| | ||||||| ||||
seq2  ACTTT-GATG-AAACTTGACCTTCC-GTTGTGACCTG-GCATAGA-TCAT  623

seq1  GGCTTTC  657
       ||||||
seq2  -GCTTTC  629

seq1: chr2_136191761_136193036
seq2: B6Ng01-085H11.g_62_1326 (reverse)

seq1  ATTTTCCAAGCATTGGTCCTCCCCTGCTCTTTTCCTCTCCAGCCCCACCT  50
      ||||||||  |||  || |||||| | |||||||||| |||||| |  | 
seq2  ATTTTCCAGACATGTGTTCTCCCCAGGTCTTTTCCTC-CCAGCCACGTC-  48

seq1  TCACAACATATATTTAGACAAAGCTCT-TCCTCACTGCAAATGTCTATTG  99
         |||||| ||||| ||||| ||| | |||  ||  |||||||| ||||
seq2  ---CAACAT-TATTTGGACAAGGCTTTCTCCCAACGCCAAATGTC-ATTG  93

seq1  CCAAGGACCTAATACATTTTGAGA-TGCCTGTGAATACTGTCTTTTAGGT  148
      |||  || || ||||| ||||||| || |  ||||  ||||| ||   ||
seq2  CCA--GAACT-ATACA-TTTGAGAGTGGCCTTGAAATCTGTCCTT--AGT  137

seq1  ACCTAATCAGTGAAATTATCACAAAGTACATAG-CTGA-TAATAG-TCTA  195
      |||| |||||||||||  |||| |||||||||| |||| |||||| ||| 
seq2  ACCT-ATCAGTGAAATATTCAC-AAGTACATAGCCTGATTAATAGTTCTT  185

seq1  TAGAGAATACTGGAAGTGTCATGTTCTCAGGGGTCCTGAAAGTAATCACA  245
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGAGAATACTGGAAGTGTCATGTTTTCAGGGGTCCTGAAAGTAATCACA  235

seq1  AGTGAAGATGTAAAGTTTGCTACTTTCCCAAGCATTGATGAATATACACA  295
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  AGTGAAGATTTAAAG-TTGCTACTTTCCCAAGCATTGATGAATATACACA  284

seq1  AACAAACAAAATAGTGGTTGTATCACTTTTAATATGTAACATG-AATAGC  344
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  AACAAACAAAATAGTGGTTGTATCAC-TTTAATATGTAACATGAAATAGC  333

seq1  AAGACTACAGAACTAACAGAAACTATGATCTATTCCACAACTAAATAAGT  394
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGACTACAGAACTAACAGAAACTATGATCTA-TCCACAACTAAATAAGT  382

seq1  CAAGATAGTACATATCTACCTCCAATGTTAATTTATAATACAAATTTCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGTACATATCTACCTCCAATGTTAATTTATAATACAAATTTCTC  432

seq1  AAATTTGAACTGTTATAATGAACAAGAGTCTATGTAGAATACTACAATAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAACTGTTATAATGAACAAGAGTCTATGTAGAATACTACAATAG  482

seq1  CATATCTCATAAGTCACTGAGAGAATAGATTCTATATGAGAAATCCTAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCATAAGTCACTGAGAGAATAGATTCTATATGAGAAATCCTAAG  532

seq1  GTGGGGGGAGTGTACAGGATAAGGGCTGAGTATGTATGTTACATACTAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGAGTGTACAGGATAAGGGCTGAGTATGTATGTTACATACTAGT  582

seq1  TTAGAGTGACATTTCCTCACTAGCTCACTATAAGTTCATTTCTCTGAACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTGACATTTCCTCACTAGCTCACTATAAGTTCATTTCTCTGAACA  632

seq1  TCCTTTAGGATGTAATTTTATCATTGATTTTTCTCCCATTAAGTTAGATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGGATGTAATTTTATCATTGATTTTTCTCCCATTAAGTTAGATT  682

seq1  TCAAATATGCAAATGAATTTTCATTTTAACTCCAGTCTAAATTGGTATAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATGCAAATGAATTTTCATTTTAACTCCAGTCTAAATTGGTATAT  732

seq1  CAACACAAATCTATTTCTTACCAAGCTCCAAAATAGAAACATCAGTATAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAAATCTATTTCTTACCAAGCTCCAAAATAGAAACATCAGTATAA  782

seq1  TGGGAAATTAGGAGAAAAAGAGGAAAAGCCAAGATAACAAAATGCTGAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATTAGGAGAAAAAGAGGAAAAGCCAAGATAACAAAATGCTGAGA  832

seq1  AGAAAGAATCTATCTATAATATCTTTGGTAACTTATAATTCATTTCCAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATCTATCTATAATATCTTTGGTAACTTATAATTCATTTCCAGG  882

seq1  GACAAGATAGTTTCAAATACAATCATTCAACACATTGGGGCTGCCAAAAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATAGTTTCAAATACAATCATTCAACACATTGGGGCTGCCAAAAT  932

seq1  AGTGTGGCCAAAGAAATTCACCAGGTTAGATATTTTTGTAGAGACTATAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGCCAAAGAAATTCACCAGGTTAGATATTTTTGTAGAGACTATAA  982

seq1  TTACACTTCTCAATTGTGCCTTTACCCACTTTAATGATCTGGTTTTATCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTCTCAATTGTGCCTTTACCCACTTTAATGATCTGGTTTTATCT  1032

seq1  TGTTTTATTTGTGGGATCTGGCCATATCTACTGACTTTGCTTCTCATGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTTGTGGGATCTGGCCATATCTACTGACTTTGCTTCTCATGAT  1082

seq1  AGATGAAATTAAGGAAAAATAAAGACCTCTTTGCTGAAGGTCTCTACAGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAATTAAGGAAAAATAAAGACCTCTTTGCTGAAGGTCTCTACAGC  1132

seq1  AACTCTGTCAAGATGGCTTGGAAGAGAGTAATTCTACCCTGACATTAGCC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTCAAGATGGCTTGGAAGAGAGTAATTCTACCCTGACATTAGCC  1182

seq1  TTTCTCTGACTCTTCTTGACAATGTTATTAATAACCAGTTCTATCAACTA  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGACTCTTCTTGACAATGTTATTAATAACCAGTTCTATCAACTA  1232

seq1  TGTTTACCCTCTCCCTCCTTCTAAC-AGAATTC  1276
      ||||||||||||||||||||||||| |||||||
seq2  TGTTTACCCTCTCCCTCCTTCTAACGAGAATTC  1265