BAC Information

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BAC

Clone NameB6Ng01-085H12
Chromosome2 (Build37)
Map Location 48,813,605 - 48,814,701
singlet/doubletsinglet
Overlap geneLOC100041508
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l
Downstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085H12.bB6Ng01-085H12.g
ACCDH899132DH899133
length1,089200
definitionDH899132|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H12, 5' end.DH899133|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagatagatgaaagaactctattttatgtttgtattaacattaat
atatgctttagcattactcagatttgatttcctaagttcatatttataca
gcaattttatcatgaaaaagtatatgttaaagtaacaagaaaaagactgc
ccagaaaattataggcctgaccaaatagtcacatgaatagatggattcct
gaatatcttaagggaatttagtattgttaaagtcattgtagattgattca
caatcaaagaatgatctagtcttcttacataagtacatgaagccttgtcc
tttgaggaagggacagtgactatagtgtaatgtaccttggagtagtttac
ttcttcctgaaaatcctttgaatatacccggacttatactgaagggtgtc
agttatgaagctttagtctgagatagaaagtatgcttacacatgctcatc
agtgacactagttactgtgtgttcatcgaaatacagataacacagagcca
cctaacattgctatacttttttcagtattcagctactggtttggattgag
ggcataaacaaagcagaaggtttttaagaatatgcattttttattttcaa
gtgactgaaatatgtccttgaaaaatcactatagaaacttttgtaaaatt
gtatgaaaatgatcatataactatgcttaataaagaaggtattagaattc
cataaagctaatcacattgtactttttgggaaagataagttaatgaggat
aaggggaaatattaggttgtcatagaagggagagatttcaggtaaagaca
aaccttccaatgagaagatgtctttggaaaatttggttttctttttcttt
ttttgcaaatttggtttttaagtattattttgttgtggctagtttgtttt
tggagacagggtcttactctgtagtgcgtggaatttacagagctctgccc
atctgtctaactctacttcacaaatgctgggactaaaggcatgcaccaca
cacgcagcccagagatttatttttatacattaaaacaaatattaaaaatt
aacgtgtaaaacaaatggtaagttccaaatacctggaaa
atgaaattcatagcgtaggggaattcgaggacgggaagacaggagtgggt
ggatgggttgtggaataccctcatagaagcagggggaggggaatgggata
gggagtttcaggggtgggtgagaaaggggataacatttgaaacaaagaaa
atatactttaaaaaaaagaaaattgttcgaagtccttagtctttagagaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_48813605_48814701
seq2: B6Ng01-085H12.b_43_1131

seq1  GAATTCAGATAGATGAAAGAACTCTATTTTATGTTTGTATTAACATTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATAGATGAAAGAACTCTATTTTATGTTTGTATTAACATTAAT  50

seq1  ATATGCTTTAGCATTACTCAGATTTGATTTCCTAAGTTCATATTTATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTTAGCATTACTCAGATTTGATTTCCTAAGTTCATATTTATACA  100

seq1  GCAATTTTATCATGAAAAAGTATATGTTAAAGTAACAAGAAAAAGACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTATCATGAAAAAGTATATGTTAAAGTAACAAGAAAAAGACTGC  150

seq1  CCAGAAAATTATAGGCCTGACCAAATAGTCACATGAATAGATGGATTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAATTATAGGCCTGACCAAATAGTCACATGAATAGATGGATTCCT  200

seq1  GAATATCTTAAGGGAATTTAGTATTGTTAAAGTCATTGTAGATTGATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTTAAGGGAATTTAGTATTGTTAAAGTCATTGTAGATTGATTCA  250

seq1  CAATCAAAGAATGATCTAGTCTTCTTACATAAGTACATGAAGCCTTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAAGAATGATCTAGTCTTCTTACATAAGTACATGAAGCCTTGTCC  300

seq1  TTTGAGGAAGGGACAGTGACTATAGTGTAATGTACCTTGGAGTAGTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAAGGGACAGTGACTATAGTGTAATGTACCTTGGAGTAGTTTAC  350

seq1  TTCTTCCTGAAAATCCTTTGAATATACCCGGACTTATACTGAAGGGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGAAAATCCTTTGAATATACCCGGACTTATACTGAAGGGTGTC  400

seq1  AGTTATGAAGCTTTAGTCTGAGATAGAAAGTATGCTTACACATGCTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAAGCTTTAGTCTGAGATAGAAAGTATGCTTACACATGCTCATC  450

seq1  AGTGACACTAGTTACTGTGTGTTCATCGAAATACAGATAACACAGAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACACTAGTTACTGTGTGTTCATCGAAATACAGATAACACAGAGCCA  500

seq1  CCTAACATTGCTATACTTTTTTCAGTATTCAGCTACTGGTTTGGATTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACATTGCTATACTTTTTTCAGTATTCAGCTACTGGTTTGGATTGAG  550

seq1  GGCATAAACAAAGCAGAAGGTTTTTAAGAATATGCATTTTTTATTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAACAAAGCAGAAGGTTTTTAAGAATATGCATTTTTTATTTTCAA  600

seq1  GTGACTGAAATATGTCCTTGAAAAATCACTATAGAAACTTTTGTAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGAAATATGTCCTTGAAAAATCACTATAGAAACTTTTGTAAAATT  650

seq1  GTATGAAAATGATCATATAACTATGCTTAATAAAGAAGGTATTAGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAATGATCATATAACTATGCTTAATAAAGAAGGTATTAGAATTC  700

seq1  CATAAAGCTAATCACATTGTACTTTTTGGGAAAGATAAGTTAATGAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGCTAATCACATTGTACTTTTTGGGAAAGATAAGTTAATGAGGAT  750

seq1  AAGGGGAAATATTAGGTTGTCATAGAAGGGAGAGATTTCAGGTAAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAATATTAGGTTGTCATAGAAGGGAGAGATTTCAGGTAAAGACA  800

seq1  AACCTTCCAATGAGAAGATGTCTTTGGAAAATTTGGTTTTCTTTTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACCTTCCAATGAGAAGATGTCTTTGGAAAATTTGGTTTTCTTTTTC-TT  849

seq1  TTTTTGCAAATTTGGTTTTTAAGTATTATTTTGTTGTGGCTAGTTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCAAATTTGGTTTTTAAGTATTATTTTGTTGTGGCTAGTTTGTTT  899

seq1  TTGGAGACAGGGTCTTACTCTGTAGTGCGTGGAATTTACAGAGCTCTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACAGGGTCTTACTCTGTAGTGCGTGGAATTTACAGAGCTCTGCC  949

seq1  CATCTGTCTAACTCTACTTCACAAATGCTGGGACTAAAGGCATGCACCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATCTGTCTAACTCTACTTCACAAATGCTGGGACTAAAGGCATGCACCA-  998

seq1  CACACGCAGCCCAAGAGATTTATTTTTAATACATTAAAACAAATATTAAA  1050
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  CACACGCAGCCC-AGAGATTTATTTTT-ATACATTAAAACAAATATTAAA  1046

seq1  ATTTTAACGTGTAAAAACAAATGGTAAAGTTCAAAATAACCTGGAAA  1097
      |  ||||||||| |||||||||||| |||||| |||| |||||||||
seq2  A-ATTAACGTGT-AAAACAAATGGT-AAGTTCCAAAT-ACCTGGAAA  1089