BAC Information

Click to search

BAC

Clone NameB6Ng01-085J09
Chromosome2 (Build37)
Map Location 164,340,162 - 164,341,013
singlet/doubletsinglet
Overlap genenone
Upstream geneHnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt
Downstream geneLOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085J09.bB6Ng01-085J09.g
ACCDH899222DH899223
length841853
definitionDH899222|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J09, 5' end.DH899223|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctggtggaatttttggggtcacttatatatactatcatatcat
ctgcaaatagtgatattttgacttcttcctttccaatttgtatccccttg
atgtccttttgttgtcaaattgctctggctaggacttcaagtactatatt
gaataggtagggagaaagtgggcagccttgtctagtccctgattttagtg
ggattgctttgagtttccctgcatttagtttaatgttggctactggtttg
ctgtatattgcttttattatgtttaggtatgggccttgaattcctgattt
ttccaagacttttatcatgaaggggtgttggattttgtcaaatgctttct
cggcatctagtaaaatgatcatgtggcttttttctttgagtttgtttata
tagtggatacgttgttgggtttccatatattgaaccatccctgcatccct
gggatgaagcctacttgatgatgatggatggttgttttgatgtgttcttg
gattcagtttgcaacaattttattgagtatttttgcatcgatattcataa
gggaaattggtctgaagttctctttctttgttgggtctttgtgtagttta
ggcatcagagtaattgtggctttcatagaatgaattgggtagtgttcctt
ctgtttctattttgtggaatagtttgaagagtattggtattaggtcttct
ttaaggtctgatagaactctgtactaacccatctgggtcctggggctttt
ttttttttttacttttggaacctggtactgtctagaaaaattctatttca
ttcagatttccagtttgttgagataggcttttatagtagga
gaattcagcagcttgtcttctgcctggtggttgtgatcctgcctcagcct
gctgagtagctgggattttcaggtctctatccggcttgtatttggattta
aaactagttcctcaactaataggttttatgatttttgtaaaatcaacaaa
cttttctctgaaggtcagtttcttcttttgtggaaataatatgtcctctg
gagggctagttagataatgcaaagtatggtctaggccaaagcttgacaaa
gacaaggggctcagaaagaaaaattaaccagtaggtttaaaaaaaaaaaa
aaaagacaaggaaaggaaaggcaaacaaagcatgggttggggcggggtgg
ggcagggtagggcagctggagagaaggttcagcagtcagcattggcctgc
tcctgcagaggaccagagttcagggttcagcgcccacttggcagttcaca
atgtgttcacaataggatctccagttccagagtatacaacatccttttct
ggccttgaacacggcatgcatccagtatacacatctgcatgcaagttcac
acacacatgaataaaactaaagaaataaaaaaaaacctgcaatgatttat
aaacacacacacacactccttgcccttccttatttaatgtgggctcctga
taaaagctgtcagtcactgtcgggtacttttacaattggatgtccagtga
gtgggaacttcacccacggtagttgccagcgcagtgccaacaatttgagg
ccgaggaaatctgctagagtcctgcatctgttgggtggattctccagaag
tgcagagtaatacgggggctaaaactgtggatgctggttgagggggcaga
ggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164340162_164341013
seq2: B6Ng01-085J09.g_71_923 (reverse)

seq1  ACCTCTGCCCCCTC-ACCAGCATCCACCGTCTTAGCCCCCGTATTACTCT  49
      |||||||||||||| |||||||||||| || |||||||||||||||||||
seq2  ACCTCTGCCCCCTCAACCAGCATCCACAGTTTTAGCCCCCGTATTACTCT  50

seq1  GCACTTCCTGGAGAATCCACCCAACAGATGCAGGACTCTAGCAGATTTCC  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTT-CTGGAGAATCCACCCAACAGATGCAGGACTCTAGCAGATTTCC  99

seq1  TCGGCCTCAAATTGTTGGCACTGCGCTGGCAACTACCGTGGGTGAAGTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCTCAAATTGTTGGCACTGCGCTGGCAACTACCGTGGGTGAAGTTC  149

seq1  CCACTCACTGGACATCCAATTGTAAAAGTA-CCGACAGTGACTGACAGCT  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCACTCACTGGACATCCAATTGTAAAAGTACCCGACAGTGACTGACAGCT  199

seq1  TTTATCAGGAGCCCACATTAAATAAGGAAGGGCAAGGAGTGTGTGTGTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGGAGCCCACATTAAATAAGGAAGGGCAAGGAGTGTGTGTGTGT  249

seq1  GTTTATAAATCATTGCAGGTTTTTTTTTATTTCTTTAGTTTTATTCATGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAATCATTGCAGGTTTTTTTTTATTTCTTTAGTTTTATTCATGT  299

seq1  GTGTGTGAACTTGCATGCAGATGTGTATACTGGATGCATGCCGTGTTCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAACTTGCATGCAGATGTGTATACTGGATGCATGCCGTGTTCAA  349

seq1  GGCCAGAAAAGGATGTTGTATACTCTGGAACTGGAGATCCTATTGTGAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAAAGGATGTTGTATACTCTGGAACTGGAGATCCTATTGTGAAC  399

seq1  ACATTGTGAACTGCCAAGTGGGCGCTGAACCCTGAACTCTGGTCCTCTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGAACTGCCAAGTGGGCGCTGAACCCTGAACTCTGGTCCTCTGC  449

seq1  AGGAGCAGGCCAATGCTGACTGCTGAACCTTCTCTCCAGCTGCCCTACCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGGCCAATGCTGACTGCTGAACCTTCTCTCCAGCTGCCCTACCC  499

seq1  TGCCCCACCCCGCCCCAACCCATGCTTTGTTTGCCTTTCCTTTCCTTGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCACCCCGCCCCAACCCATGCTTTGTTTGCCTTTCCTTTCCTTGTC  549

seq1  TTTTTTTTTTTTTTTTAAACCTACTGGTTAATTTTTCTTTCTGAGCCCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTAAACCTACTGGTTAATTTTTCTTTCTGAGCCCCT  599

seq1  TGTCTTTGTCAAGCTTTGGCCTAGACCATACTTTGCATTATCTAACTAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGTCAAGCTTTGGCCTAGACCATACTTTGCATTATCTAACTAGC  649

seq1  CCTCCAGAGGACATATTATTTCCACAAAAGAAGAAACTGACCTTCAGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAGGACATATTATTTCCACAAAAGAAGAAACTGACCTTCAGAGA  699

seq1  AAAGTTTGTTGATTTTACAAAAATCATAAAACCTATTAGTTGAGGAACTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGTTGATTTTACAAAAATCATAAAACCTATTAGTTGAGGAACTA  749

seq1  GTTTTAAATCCAAATACAAGCCGGATAGAGACCTGAAAATCCCAGCTACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATCCAAATACAAGCCGGATAGAGACCTGAAAATCCCAGCTACT  799

seq1  CAGCAGGCTGAGGCAGGATCACAACCACCAGGCAGAAGACAAGCTGCTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCTGAGGCAGGATCACAACCACCAGGCAGAAGACAAGCTGCTGA  849

seq1  ATTC  852
      ||||
seq2  ATTC  853