BAC Information

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BAC

Clone NameB6Ng01-085L14
Chromosome6 (Build37)2 (Build37)
Map Location 85,564,026 - 85,564,541131,007,867 - 131,008,766
singlet/doubletsingletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085L14.bB6Ng01-085L14.g
ACCDH899315DH899316
length934904
definitionDH899315|Mus musculus domesticus DNA, BAC clone: B6Ng01-085L14, 5' end.DH899316|Mus musculus domesticus DNA, BAC clone: B6Ng01-085L14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,564,026 - 85,564,541)(131,007,867 - 131,008,766)
sequence
gaattcatatacagattcatgcatataccctcacaagtccccatttgaac
caattgagcccagcttccatgccatctgataattgcacacttacacacac
acacacacacacacacacacacgcatgcgcgcacacacacacttatgtgt
gtatatgaagcaaaagaccaagcaccgttgcagagagaactcactcattc
tggctgaaaaataagctccaatctttattgcatagggaaagaaaacactt
ttacacttttattgctaaatgaattaaaaccaagtctgtaagaaagaaaa
gctttattatccttaagactaagcctgccttggtattaagaaaagccctg
ttctaccccatggtcaggagaagcctgcctgctccttctgctctccctgc
agcttctttttttttttttttttctctttccctctgcattctgcatatgg
ctctcttaattttttatgttgccttatagtttctaagttattccactctg
cattctccttctaatcttgctctctcctcctgctctgatgccacaatggc
cttgctctctatgctcttgctcccaaagctttctctccaaggttacatct
ccaatgtaatctttcttagtcttctgtaccctttctaggagaatagatca
catggctttttcaacccccccccttttttaaacaaaagttcactggaagt
tcaaacataaataagtttacagcacagaatattcacatgcatatctatta
ggagtaattatctggctaagcattcgtcatctttcaccagttctacaggt
tcataaagagtttttatgaaaagtcaaaaacataacttttgtgggtaaat
tttgtatttgataaacctagtcaatattttatcttctgtccttgcaccta
tagcctattgttagttccctttttaagaccactg
gaattcataccatcctgttctacacagagttccaagacagctagggctac
atagtgagaccttgtctcaacaaacaaacaaacaaacaaacaaacaagcc
ccaaaccaaaccacacaaaacaacaacaaaacccagactattttagaaga
atgcttttgtccttgagtttctgagtcacgggttctctctgtagaacttg
ccctgtagaccagacaggcttcagaaattggcctcttgaatgctgggatt
aaaggtgtgtgccaatacacccagcttagaataatgctttttatatcttg
ggtgggaaaggcctctgtgtaagatccaaaaccagaagcaatatagcaga
gtgtgtagccagatcggccaacttggagattgcaagtagtctcataaact
tggaaatcacaagtagtctctaaaacgttttctaagctcagagatgtgtg
gcaactcaagagagacttttataatatacctatcagagattttacattca
gagcacatgtggggtctttttgttttgttttgttttgtttttgttttttg
agacacggtttctttgtgtagttctagcagtcctggaactctgtgtagac
caggctagtcttgaactcacagaaattcacttgcttctgcctcccaagca
ctgagattaaaggtctgtgccaccactatttgactaaagtggagttctta
aaggtcggaaaaatacggtgggggtagagcatacaattggcaaacattga
ggccctaagttttgatcctatggcacattgtagaagggaaaagaccagca
tgagaaatgtggacaaaggcagagacacttatggatccaattatgtactt
ggaaagtgaaatgtgtttccgaaaagtgggagttcacactctcttctctg
ggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85564026_85564541
seq2: B6Ng01-085L14.b_46_162 (reverse)

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTATGTGTAATGTATGCCTGTAATCCT  50
      |||||||||||||||||||||||||| |||           || |||  |
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTAAGTG-----------TGCAAT--T  37

seq1  TGTACATGAGATGTGAAGACCGGAGGATAAGGTGTTCAAAGCCAGCCCCA  100
         | |||  ||| ||||  | | |   ||   |||||||    | |   
seq2  ATCAGATGGCATG-GAAG--CTGGGCTCAATTGGTTCAAATGGGGAC---  81

seq1  GCTATATAGTGAGGAGTTTGAG-GTCAGCCTGGGCTATATGAGATCCTGC  149
            | |||||| || |  |  | |  |||   |||||||  ||    
seq2  ------TTGTGAGG-GTATATGCATGAATCTG---TATATGAATTC----  117

seq1  TCCAAACATACAAACAAGTAAGCAAATAAAATCATGTTTATGTGTATCTT  199
                                                        
seq2  --------------------------------------------------  117

seq1  TGGATTCTGTCCTGGATTCTGTCCTGAAAGGGCATGACTAGACTAATCCT  249
                                                        
seq2  --------------------------------------------------  117

seq1  TTATAAGGTTAATTAAGTACACACACACACACACACACACACACACACAC  299
                                                        
seq2  --------------------------------------------------  117

seq1  ACACACACACACACACACATATATATAATATAAGGTTATAATATAATAAG  349
                                                        
seq2  --------------------------------------------------  117

seq1  GCTATATGTTTTTACCTAATTGTCTTATAAACTTAGTGGAGATTTATATG  399
                                                        
seq2  --------------------------------------------------  117

seq1  CATTTATGCTTTAATGCCATCAGTTACTTATATGTGATATTCTCTAAGCC  449
                                                        
seq2  --------------------------------------------------  117

seq1  AGCATTGTAAACCACAGAACTATTGATGCTGTCTTAATCAAACAAAATAT  499
                                                        
seq2  --------------------------------------------------  117

seq1  GATCTGTATATGAATTC  516
                       
seq2  -----------------  117

seq1: chr2_131007867_131008766
seq2: B6Ng01-085L14.g_69_972 (reverse)

seq1  AGGCCAGAGAAGAGAGTGTG-ACTCCCTACTCTTCGGATACACATTTCAC  49
      || ||||||||||||||||| |||||| ||| |||||| |||||||||||
seq2  AGCCCAGAGAAGAGAGTGTGAACTCCC-ACTTTTCGGAAACACATTTCAC  49

seq1  TTTCCATGTACAT-ATTGGATCC-TGAGTGTCTCTGCCTTTGTCCACATT  97
      |||||| |||||| ||||||||| | ||||||||||||||||||||||||
seq2  TTTCCAAGTACATAATTGGATCCATAAGTGTCTCTGCCTTTGTCCACATT  99

seq1  TCTCATGCTGGTCTTTTCCCTTCTAC-ATGTGCCATAAGGATC-AAACTT  145
      |||||||||||||||||||||||||| ||||||||| |||||| ||||||
seq2  TCTCATGCTGGTCTTTTCCCTTCTACAATGTGCCAT-AGGATCAAAACTT  148

seq1  AGGGCCTC-ATGTTTGCCAATTGTATGCTCTACCCCCAACCGTATTTTTC  194
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AGGGCCTCAATGTTTGCCAATTGTATGCTCTACCCCC-ACCGTATTTTTC  197

seq1  CGACCTTTAAGAACTCCACTTTAGTCAAATAGTGGTGGCACAGACCTTTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTTAAGAACTCCACTTTAGTCAAATAGTGGTGGCACAGACCTTTA  247

seq1  ATCTCAGTGCTTGGGAGGCAGAAGCAAGTGAATTTCTGTGAGTTCAAGAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTGCTTGGGAGGCAGAAGCAAGTGAATTTCTGTGAGTTCAAGAC  297

seq1  TAGCCTGGTCTACACAGAGTTCCAGGACTGCTAGAACTACACAAAGAAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGGTCTACACAGAGTTCCAGGACTGCTAGAACTACACAAAGAAAC  347

seq1  CGTGTCTCAAAAAAC-AAAACAAAACAAAACAAAACAAAAAGACCCCACA  393
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CGTGTCTCAAAAAACAAAAACAAAACAAAACAAAACAAAAAGACCCCACA  397

seq1  TGTGCTCTGAATGTAAAATCTCTGATAGGTATATTATAAAAGTCTCTCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGAATGTAAAATCTCTGATAGGTATATTATAAAAGTCTCTCTT  447

seq1  GAGTTGCCACACATCTCTGAGCTTAGAAAACGTTTTAGAGACTACTTGTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCCACACATCTCTGAGCTTAGAAAACGTTTTAGAGACTACTTGTG  497

seq1  ATTTCCAAGTTTATGAGACTACTTGCAATCTCCAAGTTGGCCGATCTGGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAGTTTATGAGACTACTTGCAATCTCCAAGTTGGCCGATCTGGC  547

seq1  TACACACTCTGCTATATTGCTTCTGGTTTTGGATCTTACACAGAGGCCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTCTGCTATATTGCTTCTGGTTTTGGATCTTACACAGAGGCCTT  597

seq1  TCCCACCCAAGATATAAAAAGCATTATTCTAAGCTGGGTGTATTGGCACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCAAGATATAAAAAGCATTATTCTAAGCTGGGTGTATTGGCACA  647

seq1  CACCTTTAATCCCAGCATTCAAGAGGCCAATTTCTGAAGCCTGTCTGGTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAATCCCAGCATTCAAGAGGCCAATTTCTGAAGCCTGTCTGGTC  697

seq1  TACAGGGCAAGTTCTACAGAGAGAACCCGTGACTCAGAAACTCAAGGACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGCAAGTTCTACAGAGAGAACCCGTGACTCAGAAACTCAAGGACA  747

seq1  AAAGCATTCTTCTAAAATAGTCTGGGTTTTGTTGTTGTTTTGTGTGGTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTCTTCTAAAATAGTCTGGGTTTTGTTGTTGTTTTGTGTGGTTT  797

seq1  GGTTTGGGGCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTGAGACAAGGTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGGCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTGAGACAAGGTC  847

seq1  TCACTATGTAGCCCTAGCTGTCTTGGAACTCTGTGTAGAACAGGCTGGTA  893
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCACTATGTAGCCCTAGCTGTCTTGGAACTCTGTGTAGAACAGGATGGTA  897

seq1  TGAATTC  900
      |||||||
seq2  TGAATTC  904