BAC Information

Click to search

BAC

Clone NameB6Ng01-085P13
Chromosome2 (Build37)
Map Location 166,635,810 - 166,776,543
singlet/doubletdoublet
Overlap geneArfgef2, LOC670802, Cse1l, Stau1
Upstream genePrkcbp1, LOC546780, Ncoa3, Sulf2, LOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk
Downstream geneLOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085P13.bB6Ng01-085P13.g
ACCDH899494DH899495
length1,220877
definitionDH899494|Mus musculus domesticus DNA, BAC clone: B6Ng01-085P13, 5' end.DH899495|Mus musculus domesticus DNA, BAC clone: B6Ng01-085P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,775,305 - 166,776,543)(166,635,810 - 166,636,685)
sequence
gaattctccccatggtgccggaagttgcccaggctgtcggggttagtcaa
ggacaccacaccaaagatttcaccagggcagctccaaatcctgccaaggc
aacggtaactgccatgatagcccgagagttgttgtacgggggcacctcgc
ccacagccgagaccattttaaagagtaacatctcttcaggccacgtaccc
catggacctcgcactagaccctctgagcaactgtactacctttccagagc
ccagggattccaggtaaccgtgtggtcatctctgggccttacgttcttcc
tgcacagaattgcttgtgtagtgtgtgcaagaccctgggttctgtcctca
gcactacagaaaccagaaaaggcaagattatatgctttatttaagatttg
aatgtacagtgaagttctgaaggaaggaagatgtctgggatgagaatggc
ttatataaaggtagctatttctaagcccaacaactttgagtatgattact
ggtggaaagaaccaactccagcaagttgtcctcagtgtgcacaccctgcc
ccaggaggtttacgtgtggccagggctgaagggagagaagacacttttac
ttaggaagcagccactacatgagcatgggagaagaggcttgagggttctg
ggctggggcccacatgcaagaggttgctgtttttccttaggttgaataca
aagattttcccaagaacaacaagaacgagtgtgtatctctcatcaactgc
tcctcacagccgcctctcgtcagtcatggcatcggcaaggatgtggagtc
ctgtcatgatatggtatgtgggcccaggaggtgttgagaagagctggcac
attcccttgttcagtcagtgtgttagtggcctcagaaagagggacatggt
tctcctgtagccttgtggacatgtctgatgatcattcattcttcctcctt
gctttctttctctttcctcacttctggcagctgtaagaaagcccctttgg
ggagttctgttcaaagaggaatcagcacacttgagctttgtgtccctcga
tgggaccattatgcaccctttagcgggcaccctcctgaattgaagggaaa
catgggaagtttgatgttgagcagattcacattccatggggaggtttaga
aagctgactatgtctgtcctggtggttgatattctcctcactttcaaggc
tgcactgaacattaagctgc
gaattccaggcacagtgctcctgtgagctttagttcggaccttactatta
ttatctcctccattaaggcctaagagttggaaacagtggttgcactctgc
tgaagagactgttttctgaagttgaattctaagttacatttttttattag
atgttttgtttattttaattttttattttttttaaggatttatttattta
ttatatgtaagtacactgtagctgtcttcagacacaccagaagagggcgt
cagatctcgttacggatggttgtgagccaccatgtggttgctgggatttg
aactccagaccattggaagagcagttaggtactcttacccactgagccat
ctcaccagcccctaagttacatttgaaaccttctggtcaaaaagattttt
tttttttctgcagtattctactctgtctgttgtgttggaaggtggtttca
ggtgagcatcactgagctaggtttttctgattcctgttatctgcaccagt
agccctgagctctgtgctccatattcgggattgatgactgcttggggtac
tcttacagcaggaaacaaaggagagtcatttgcccacagctacatagtgg
gcgggcaagcgaggttgcagctcccacttatccaagctgtggaggatgaa
gtccggtctcaggcatgctgctctctctctttgataccggttgagaagct
tgtgagccgtgggtggccatccattgagctgtttgagcggcacactgcaa
gtgaaagaccgactggtgtgggtgggaggtagagacacagtgggcacagg
caaggctttctccagggtcagctgtacttgtgaggaagacgaaggagagg
tggatgacgggtagtggtggttggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_166775305_166776543
seq2: B6Ng01-085P13.b_45_1264 (reverse)

seq1  GCAGCTTTAAAATGTTCAGTGCAGCCTAGAAAGGTGAAGGAAGGAATAAT  50
      |||||||   ||||||||||||||||| |||| ||| ||||  |||| ||
seq2  GCAGCTT---AATGTTCAGTGCAGCCTTGAAA-GTG-AGGA--GAAT-AT  42

seq1  CAAACCACAGGGAACAGAC-TAGTCCAGCTTCTTAAAACTTCCCAATGAA  99
      ||| |  ||||  |||||| |||| |||||| |  |||| |||| ||| |
seq2  CAACCACCAGG--ACAGACATAGT-CAGCTT-TCTAAACCTCCCCATGGA  88

seq1  ATGTTTGAATCCTGCTCAACATCAAAC-TCCCATGTTTCCCTTCAAATCA  148
      |||  ||||| |||||||||||||||| |||||||||||||||||| |||
seq2  ATG--TGAAT-CTGCTCAACATCAAACTTCCCATGTTTCCCTTCAATTCA  135

seq1  -GAGGGTGCCCGCTTAAAGGGTGCATTATGGTCCCATCGAGTGAACACCA  197
       |||||||||||| |||||||||||| |||||||||||||| | ||| ||
seq2  GGAGGGTGCCCGC-TAAAGGGTGCATAATGGTCCCATCGAG-GGACA-CA  182

seq1  AAGCTCAAGTGTGCTGATTCCTTCTTTGAACAGAACTCCCCAAAGGGGGC  247
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  AAGCTCAAGTGTGCTGATTCC-TCTTTGAACAGAACTCCCCAAA-GGGGC  230

seq1  TTTC-TACAGCTGCCAGAAGTGAGGAAAGAGAAAGAAAGCAAGGAAGGAA  296
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCTTACAGCTGCCAGAAGTGAGGAAAGAGAAAGAAAGCAAGG-AGGAA  279

seq1  GAATGAATGAATCAATCAGACATGTCCACAAGGCTACAGGAGAACCATGT  346
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  GAATGAATG-ATC-ATCAGACATGTCCACAAGGCTACAGGAGAACCATGT  327

seq1  CCCTCTTTCTGAGGCCACTAACACACTGACTGAACAAGGGAATGTGCCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTCTGAGGCCACTAACACACTGACTGAACAAGGGAATGTGCCAG  377

seq1  CTCTTCTCAACACCTCCTGGGCCCACATACCATATCATGACAGGACTCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCAACACCTCCTGGGCCCACATACCATATCATGACAGGACTCCA  427

seq1  CATCCTTGCCGATGCCATGACTGACGAGAGGCGGCTGTGAGGAGCAGTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGCCGATGCCATGACTGACGAGAGGCGGCTGTGAGGAGCAGTTG  477

seq1  ATGAGAGATACACACTCGTTCTTGTTGTTCTTGGGAAAATCTTTGTATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGATACACACTCGTTCTTGTTGTTCTTGGGAAAATCTTTGTATTC  527

seq1  AACCTAAGGAAAAACAGCAACCTCTTGCATGTGGGCCCCAGCCCAGAACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAGGAAAAACAGCAACCTCTTGCATGTGGGCCCCAGCCCAGAACC  577

seq1  CTCAAGCCTCTTCTCCCATGCTCATGTAGTGGCTGCTTCCTAAGTAAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCTCTTCTCCCATGCTCATGTAGTGGCTGCTTCCTAAGTAAAAG  627

seq1  TGTCTTCTCTCCCTTCAGCCCTGGCCACACGTAAACCTCCTGGGGCAGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTCTCCCTTCAGCCCTGGCCACACGTAAACCTCCTGGGGCAGGG  677

seq1  TGTGCACACTGAGGACAACTTGCTGGAGTTGGTTCTTTCCACCAGTAATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACACTGAGGACAACTTGCTGGAGTTGGTTCTTTCCACCAGTAATC  727

seq1  ATACTCAAAGTTGTTGGGCTTAGAAATAGCTACCTTTATATAAGCCATTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAAAGTTGTTGGGCTTAGAAATAGCTACCTTTATATAAGCCATTC  777

seq1  TCATCCCAGACATCTTCCTTCCTTCAGAACTTCACTGTACATTCAAATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCAGACATCTTCCTTCCTTCAGAACTTCACTGTACATTCAAATCT  827

seq1  TAAATAAAGCATATAATCTTGCCTTTTCTGGTTTCTGTAGTGCTGAGGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGCATATAATCTTGCCTTTTCTGGTTTCTGTAGTGCTGAGGAC  877

seq1  AGAACCCAGGGTCTTGCACACACTACACAAGCAATTCTGTGCAGGAAGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAGGGTCTTGCACACACTACACAAGCAATTCTGTGCAGGAAGAA  927

seq1  CGTAAGGCCCAGAGATGACCACACGGTTACCTGGAATCCCTGGGCTCTGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGGCCCAGAGATGACCACACGGTTACCTGGAATCCCTGGGCTCTGG  977

seq1  AAAGGTAGTACAGTTGCTCAGAGGGTCTAGTGCGAGGTCCATGGGGTACG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAGTACAGTTGCTCAGAGGGTCTAGTGCGAGGTCCATGGGGTACG  1027

seq1  TGGCCTGAAGAGATGTTACTCTTTAAAATGGTCTCGGCTGTGGGCGAGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGAAGAGATGTTACTCTTTAAAATGGTCTCGGCTGTGGGCGAGGT  1077

seq1  GCCCCCGTACAACAACTCTCGGGCTATCATGGCAGTTACCGTTGCCTTGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCGTACAACAACTCTCGGGCTATCATGGCAGTTACCGTTGCCTTGG  1127

seq1  CAGGATTTGGAGCTGCCCTGGTGAAATCTTTGGTGTGGTGTCCTTGACTA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTGGAGCTGCCCTGGTGAAATCTTTGGTGTGGTGTCCTTGACTA  1177

seq1  ACCCCGACAGCCTGGGCAACTTCCGGCACCATGGGGAGAATTC  1239
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGACAGCCTGGGCAACTTCCGGCACCATGGGGAGAATTC  1220

seq1: chr2_166635810_166636685
seq2: B6Ng01-085P13.g_72_948

seq1  GAATTCCAGGCACAGTGCTCCTGTGAGCTTTAGTTCGGACCTTACTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCACAGTGCTCCTGTGAGCTTTAGTTCGGACCTTACTATTA  50

seq1  TTATCTCCTCCATTAAGGCCTAAGAGTTGGAAACAGTGGTTGCACTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCTCCATTAAGGCCTAAGAGTTGGAAACAGTGGTTGCACTCTGC  100

seq1  TGAAGAGACTGTTTTCTGAAGTTGAATTCTAAGTTACATTTTTTTATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGACTGTTTTCTGAAGTTGAATTCTAAGTTACATTTTTTTATTAG  150

seq1  ATGTTTTGTTTATTTTAATTTTTTATTTTTTTTAAGGATTTATTTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGTTTATTTTAATTTTTTATTTTTTTTAAGGATTTATTTATTTA  200

seq1  TTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCGT  250

seq1  CAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTG  300

seq1  AACTCCAGACCATTGGAAGAGCAGTTAGGTACTCTTACCCACTGAGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGACCATTGGAAGAGCAGTTAGGTACTCTTACCCACTGAGCCAT  350

seq1  CTCACCAGCCCCTAAGTTACATTTGAAACCTTCTGGTCAAAAAGATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGCCCCTAAGTTACATTTGAAACCTTCTGGTCAAAAAGATTTTT  400

seq1  TTTTTTTCTGCAGTATTCTACTCTGTCTGTTGTGTTGGAAGGTGGTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGCAGTATTCTACTCTGTCTGTTGTGTTGGAAGGTGGTTTCA  450

seq1  GGTGAGCATCACTGAGCTAGGTTTTTCTGATTCCTGTTATCTGCACCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCATCACTGAGCTAGGTTTTTCTGATTCCTGTTATCTGCACCAGT  500

seq1  AGCCCTGAGCTCTGTGCTCCATATTCGGGATTGATGACTGCTTGGGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAGCTCTGTGCTCCATATTCGGGATTGATGACTGCTTGGGGTAC  550

seq1  TCTTACAGCAGGAAACAAAGGAGAGTCATTTGCCCACAGCTACATAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGCAGGAAACAAAGGAGAGTCATTTGCCCACAGCTACATAGTGG  600

seq1  GCGGGCAAGCGAGGTTGCAGCTCCCACTTATCCAAGCTGTGGAGGATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCAAGCGAGGTTGCAGCTCCCACTTATCCAAGCTGTGGAGGATGAA  650

seq1  GTCCGGTCTCAGGCATGCTGCTCTCTCTCTTTGATACCGGTTGAGAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGTCTCAGGCATGCTGCTCTCTCTCTTTGATACCGGTTGAGAAGCT  700

seq1  TGTGAGCCGTGGGTGGCCATCCATTGAGCTGTTTGAGCGGCACACTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCGTGGGTGGCCATCCATTGAGCTGTTTGAGCGGCACACTGCAA  750

seq1  GTGAAAGACCGACTGGTGTGGGTGGGAGGTAGAGACACAGTGGGCACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGACCGACTGGTGTGGGTGGGAGGTAGAGACACAGTGGGCACAGG  800

seq1  CAAGGCTTTCTCCAGGGTCAGCTGTAC-TGTGAGGAGGACGAAGGAGAGG  849
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  CAAGGCTTTCTCCAGGGTCAGCTGTACTTGTGAGGAAGACGAAGGAGAGG  850

seq1  TGGATGACGGGTAGTGGTGGTTGGTTG  876
      |||||||||||||||||||||||||||
seq2  TGGATGACGGGTAGTGGTGGTTGGTTG  877