BAC Information

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BAC

Clone NameB6Ng01-087C07
Chromosome2 (Build37)
Map Location 67,394,864 - 67,492,940
singlet/doubletdoublet
Overlap genenone
Upstream geneScn9a, Scn7a, LOC383707, LOC100039540, Gm1322, Cmya3
Downstream geneLOC621171, LOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087C07.bB6Ng01-087C07.g
ACCDH900353DH900354
length1,1821,137
definitionDH900353|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C07, 5' end.DH900354|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,394,864 - 67,396,060)(67,491,773 - 67,492,940)
sequence
gaattcctgcttcatttaattatgctgttactctctagaaattgataatg
ctcttgtctccagaagctggaacctaacaagaggatctgtgctcctgtgc
caataccagctgttagaaattatcttccagctcaaatttcatctgttgct
ttcagatttcaggggttcctcttcaattcccagaaataacatttttttcc
ccaaggctgaaagacactaattagttaccttgaataacccaatttaatgt
actattaagagacttacaagttactacaagcacttgagaacttatatagc
atctaataggtagtctggttacaccatttctggtacacttggccagagga
tttgactctggtgtccttaggaaggcctaaaatgacatgtgacttaacag
tggatttattcagagagatttacattgaagacttaaagaccaaaggagtg
gctgtgtgagagctgaccaagcagattctctatagaccaggcaagatggc
caaacacaagcaaaatatatttgtatctacctttcttgtacaagataata
ttacttctttttttccaggatatgttagggtttttttttaaaaataacat
atttctcgagtagttaaaccttaatagaagtcttaaaatgtatcatgttg
agaagctgactcctgacccccatctgcatctatggtttgtaactttcttc
ttgtaaatatttataattaatgcctcagctgaaaagtacttgacgacaat
ctgaattgcctttccatgaatggagcacttgagtaaagtcaagtagtatg
taggttaactagataatataattatgaaaggaaaaaaaacacacacagtg
catacagataaaaaattgtcatagccaaaaactgaaaatacaaaagcaga
agccattattattacaattaaaaaggaattctgggtatgtgcacatacat
gtgtgcatgcactcgtgctgtgtgcatctatggaggtcatggagtgtctt
cagagtagttctctcattccatatgaggaacatgaggatccatctagtca
tctgggctgagaacaggagcctttaaccactgagcacttcacagcatgta
ataatttctaaaggtggtgtaaataatgactttggattttggaaccctgc
atcgatgtaagagtcttatcctcacgaataca
gaattctatggccaccaagggcttgtcttggatagacttcaaagactttc
ttagtataactaggttggttaagggaaagctgtgtaagaacacagcagca
tctctgaatttgtggtgttttatttcaaagcccaattttgttatttcttt
tgtaatatgacttttggaagctctacaagcctttagcccttagttccctg
attcaaaagctatgaatagatgttagttattgctcctctcattgtaacac
tggtctttctaccacagacctgacgttacaggtctcaatatgatatagtc
aactcagtatatatttaccaactcatagcaagaaagatcacatctctggt
gatctctcaaagggaaggtggtggcaatgtataagagattatttggctca
agagcggcagaaaggtaagaaatactaaatggttaggaaataactaattt
tattctacttcttcctctgaagcatcactgggcttcagatgactgattct
cagcattgagggagttggtggcattgtggtggaagaggatactgacgaca
ctgctgatgatctggaaggccacagagctggaaacacaaaatgcaaagga
tcagtcccttccaggagattttggaacatgttagagaaatctaagatgtt
agcctacaaactttggtgagatgaagtctaggcagcgtgaatgtgtactg
ctgacatggacatagccataaaaaaaaaaaaaaaaaaaaaccaaccaacc
aaacaaacaaacaacaaacaaaagcccaatgcctctgacccatgggaaac
tggccaaactttccctggactaggattaaggaaatggcaaagcctttttt
tcctggtccttgtgtgggtattgatagtcagtccaaaaaaaaaaaaaaag
tctgctttagctatcttctcctacccaagtctaatctaatactgctccca
cagagactgtcctactgagatggctatgctgcctctttgttcagatgtat
gccatagccccaccttctctgttcattgtatctataaatactagagctcc
agatgctgagctttcttcagagagccagccattttatctcagcttttcca
agcctgtgttctgttcatcggtatctgtcttgtctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_67394864_67396060
seq2: B6Ng01-087C07.b_49_1230

seq1  GAATTCCTGCTTCATTTAATTATGCTGTTACTCTCTAGAAATTGATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTTCATTTAATTATGCTGTTACTCTCTAGAAATTGATAATG  50

seq1  CTCTTGTCTCCAGAAGCTGGAACCTAACAAGAGGATCTGTGCTCCTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTCCAGAAGCTGGAACCTAACAAGAGGATCTGTGCTCCTGTGC  100

seq1  CAATACCAGCTGTTAGAAATTATCTTCCAGCTCAAATTTCATCTGTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCAGCTGTTAGAAATTATCTTCCAGCTCAAATTTCATCTGTTGCT  150

seq1  TTCAGATTTCAGGGGTTCCTCTTCAATTCCCAGAAATAACATTTTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTTCAGGGGTTCCTCTTCAATTCCCAGAAATAACATTTTTTTCC  200

seq1  CCAAGGCTGAAAGACACTAATTAGTTACCTTGAATAACCCAATTTAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTGAAAGACACTAATTAGTTACCTTGAATAACCCAATTTAATGT  250

seq1  ACTATTAAGAGACTTACAAGTTACTACAAGCACTTGAGAACTTATATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAAGAGACTTACAAGTTACTACAAGCACTTGAGAACTTATATAGC  300

seq1  ATCTAATAGGTAGTCTGGTTACACCATTTCTGGTACACTTGGCCAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATAGGTAGTCTGGTTACACCATTTCTGGTACACTTGGCCAGAGGA  350

seq1  TTTGACTCTGGTGTCCTTAGGAAGGCCTAAAATGACATGTGACTTAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCTGGTGTCCTTAGGAAGGCCTAAAATGACATGTGACTTAACAG  400

seq1  TGGATTTATTCAGAGAGATTTACATTGAAGACTTAAAGACCAAAGGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTATTCAGAGAGATTTACATTGAAGACTTAAAGACCAAAGGAGTG  450

seq1  GCTGTGTGAGAGCTGACCAAGCAGATTCTCTATAGACCAGGCAAGATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGAGAGCTGACCAAGCAGATTCTCTATAGACCAGGCAAGATGGC  500

seq1  CAAACACAAGCAAAATATATTTGTATCTACCTTTCTTGTACAAGATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAAGCAAAATATATTTGTATCTACCTTTCTTGTACAAGATAATA  550

seq1  TTACTTCTTTTTTTCCAGGATATGTTAGGGTTTTTTTTTAAAAATAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTTTTTTTCCAGGATATGTTAGGGTTTTTTTTTAAAAATAACAT  600

seq1  ATTTCTCGAGTAGTTAAACCTTAATAGAAGTCTTAAAATGTATCATGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCGAGTAGTTAAACCTTAATAGAAGTCTTAAAATGTATCATGTTG  650

seq1  AGAAGCTGACTCCTGACCCCCATCTGCATCTATGGTTTGTAACTTTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGACTCCTGACCCCCATCTGCATCTATGGTTTGTAACTTTCTTC  700

seq1  TTGTAAATATTTATAATTAATGCCTCAGCTGAAAAGTACTTGACGACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATATTTATAATTAATGCCTCAGCTGAAAAGTACTTGACGACAAT  750

seq1  CTGAATTGCCTTTCCATGAATGGAGCACTTGAGTAAAGTCAAGTAGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGCCTTTCCATGAATGGAGCACTTGAGTAAAGTCAAGTAGTATG  800

seq1  TAGGTTAACTAGATAATATAATTATGAAAGGAAAAAAAACACACACAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAACTAGATAATATAATTATGAAAGGAAAAAAAACACACACAGTG  850

seq1  CATACAGATAAAAAATTGTCATAGCCAAAAAACTGAAAATACAAAAGCAG  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATACAGATAAAAAATTGTCATAGCC-AAAAACTGAAAATACAAAAGCAG  899

seq1  AAGCCATTATTATTACAATTAAAAAGGAATTCTGGGTATGTGCACATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTATTATTACAATTAAAAAGGAATTCTGGGTATGTGCACATACA  949

seq1  TGTGTGCATGCACTCGTGCTGTGGTGCATCTATGGAGGTCATGGAGTGTC  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGTGCATGCACTCGTGCTGT-GTGCATCTATGGAGGTCATGGAGTGTC  998

seq1  TTCAGGAGTAAGTTCTCTCATTCCATAATGAGGAACATGAAGATCCAATT  1050
      |||| |||| |||||||||||||||| ||||||||||||| ||||||  |
seq2  TTCA-GAGT-AGTTCTCTCATTCCAT-ATGAGGAACATGAGGATCCA--T  1043

seq1  CTAGTCATCTGGGCTGGAGAACAGGAGCCTTTAACCACTGAGCCACTTCA  1100
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  CTAGTCATCTGGGCT-GAGAACAGGAGCCTTTAACCACTGAG-CACTTCA  1091

seq1  CCAGCCATGTAATAATTTCTAAAAGTTGTGTAAAATAATGACTTTTGAAT  1150
       ||| |||||||||||||||||| || |||| |||||||||| |||| ||
seq2  -CAG-CATGTAATAATTTCTAAAGGTGGTGT-AAATAATGAC-TTTGGAT  1137

seq1  TTTGAAACCCTGCATCAGATTGGTAAGAGTTCTTAT-CTCACG-ATACA  1197
      |||| ||||||||||| |||  ||||||| |||||| |||||| |||||
seq2  TTTGGAACCCTGCATC-GAT--GTAAGAG-TCTTATCCTCACGAATACA  1182

seq1: chr2_67491773_67492940
seq2: B6Ng01-087C07.g_69_1205 (reverse)

seq1  ATAGACAAAGACAGATACACGGAATGAACAGACACAGGGGCTTGGAAAAG  50
      |||||| ||||||||||| ||  ||||||||| |||  ||||||||||||
seq2  ATAGAC-AAGACAGATAC-CG--ATGAACAGA-ACACAGGCTTGGAAAAG  45

seq1  CTGAGATAAGATGGGCTGGGCTCTCTGAAAGAAAGCTTCAGCATCCTGGA  100
      ||||||||| || |||| ||||||||| |||||||| ||||||| |||| 
seq2  CTGAGATAAAAT-GGCT-GGCTCTCTG-AAGAAAGC-TCAGCAT-CTGG-  89

seq1  AGCTCTAGGTATTTATTAGATACAATTGAACAGAG-AGGTGGGGCTATGG  149
      ||||||| ||||||| ||||||||| ||||||||| ||||||||||||||
seq2  AGCTCTA-GTATTTA-TAGATACAA-TGAACAGAGAAGGTGGGGCTATGG  136

seq1  CATACATCTGAACAAAGAGGCAGGCATAGCCAATCTCAGTAGGAACAGTC  199
      |||||||||||||||||||||| |||||||| ||||||||||| ||||||
seq2  CATACATCTGAACAAAGAGGCA-GCATAGCC-ATCTCAGTAGG-ACAGTC  183

seq1  TCTGTTGGGGAGCAGTATTTAGATTTAGACTTGGGGTAGGAGAAGATAGC  249
      |||||  |||||||||| ||||| |||||||| |||||||||||||||||
seq2  TCTGT--GGGAGCAGTA-TTAGA-TTAGACTT-GGGTAGGAGAAGATAGC  228

seq1  TAAAGCAGACTTTTTTTTTTTTTTTTTGGACTGACTATCAATACCCACAC  299
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGAC--TTTTTTTTTTTTTTTGGACTGACTATCAATACCCACAC  276

seq1  AAGGACCAGGAAAAAAAGGCTTTGCCATTTCCTTAATCCTAGTCCAGGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCAGGAAAAAAAGGCTTTGCCATTTCCTTAATCCTAGTCCAGGGA  326

seq1  AAGTTTGGCCAGTTTCCCATGGGTCAGAGGCATTGGGCTTTTTGTTTGTT  399
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  AAGTTTGGCCAGTTTCCCATGGGTCAGAGGCATTGGGC-TTTTGTTTG-T  374

seq1  TGTTTGTTTGTTTGGTTGGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTT  449
      |||||||||||||||||||||||      |||||||||||||||||||||
seq2  TGTTTGTTTGTTTGGTTGGTTGG------TTTTTTTTTTTTTTTTTTTTT  418

seq1  TTGGCTATGTCCATGTCAGCAGTACACATTCACGCTGCCTAGACTTCATC  499
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTATGTCCATGTCAGCAGTACACATTCACGCTGCCTAGACTTCATC  468

seq1  TCACCAAAGTTTGTAGGCTAACATCTTAGATTTCTCTAACATGTTCCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAAGTTTGTAGGCTAACATCTTAGATTTCTCTAACATGTTCCAAA  518

seq1  ATCTCCTGGAAGGGACTGATCCTTTGCATTTTGTGTTTCCAGCTCTGTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGGAAGGGACTGATCCTTTGCATTTTGTGTTTCCAGCTCTGTGG  568

seq1  CCTTCCAGATCATCAGCAGTGTCGTCAGTATCCTCTTCCACCACAATGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGATCATCAGCAGTGTCGTCAGTATCCTCTTCCACCACAATGCC  618

seq1  ACCAACTCCCTCAATGCTGAGAATCAGTCATCTGAAGCCCAGTGATGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTCCCTCAATGCTGAGAATCAGTCATCTGAAGCCCAGTGATGCTT  668

seq1  CAGAGGAAGAAGTAGAATAAAATTAGTTATTTCCTAACCATTTAGTATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAGAAGTAGAATAAAATTAGTTATTTCCTAACCATTTAGTATTT  718

seq1  CTTACCTTTCTGCCGCTCTTGAGCCAAATAATCTCTTATACATTGCCACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTTCTGCCGCTCTTGAGCCAAATAATCTCTTATACATTGCCACC  768

seq1  ACCTTCCCTTTGAGAGATCACCAGAGATGTGATCTTTCTTGCTATGAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCTTTGAGAGATCACCAGAGATGTGATCTTTCTTGCTATGAGTT  818

seq1  GGTAAATATATACTGAGTTGACTATATCATATTGAGACCTGTAACGTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATATATACTGAGTTGACTATATCATATTGAGACCTGTAACGTCAG  868

seq1  GTCTGTGGTAGAAAGACCAGTGTTACAATGAGAGGAGCAATAACTAACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGTAGAAAGACCAGTGTTACAATGAGAGGAGCAATAACTAACAT  918

seq1  CTATTCATAGCTTTTGAATCAGGGAACTAAGGGCTAAAGGCTTGTAGAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATAGCTTTTGAATCAGGGAACTAAGGGCTAAAGGCTTGTAGAGC  968

seq1  TTCCAAAAGTCATATTACAAAAGAAATAACAAAATTGGGCTTTGAAATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAGTCATATTACAAAAGAAATAACAAAATTGGGCTTTGAAATAA  1018

seq1  AACACCACAAATTCAGAGATGCTGCTGTGTTCTTACACAGCTTTCCCTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACAAATTCAGAGATGCTGCTGTGTTCTTACACAGCTTTCCCTTA  1068

seq1  ACCAACCTAGTTATACTAAGAAAGTCTTTGAAGTCTATCCAAGACAAGCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCTAGTTATACTAAGAAAGTCTTTGAAGTCTATCCAAGACAAGCC  1118

seq1  CTTGGTGGCCATAGAATTC  1168
      |||||||||||||||||||
seq2  CTTGGTGGCCATAGAATTC  1137