BAC Information

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BAC

Clone NameB6Ng01-087I03
Chromosome2 (Build37)
Map Location 52,245,617 - 52,426,780
singlet/doubletdoublet
Overlap geneArl5a, Cacnb4
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670
Downstream geneOTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087I03.bB6Ng01-087I03.g
ACCDH900614DH900615
length1,177261
definitionDH900614|Mus musculus domesticus DNA, BAC clone: B6Ng01-087I03, 5' end.DH900615|Mus musculus domesticus DNA, BAC clone: B6Ng01-087I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,425,596 - 52,426,780)(52,245,617 - 52,245,884)
sequence
gaattcactggaacccccattttatttaccaaagtaaaaccagtcccttg
ctcttcttgctgggaaatcaagtgcaaattttccacagtctttggctcac
ccatgccctctgacccaatagttactgcacacacacgttgtcagcactta
catttctcccctatctattcttccatgacgggttctggggtagtaggagt
ggccacgtttagcacctgagaggagaaggaagaaacataaaaataactca
tgaagagctccccgtgctagtgattgctaagagttcatttagacccctca
tcctcctaggatggtagctgtcaatctgccttccctggtctggtccctct
gcttgtcccacccagggaggaattgtttgcagctactacacttggtccag
cacagcggaagtagctgattgcctgggcttttcttatgctagtagatacc
agctaaatagattatgccactgttgacaggcagataacttttccctatct
ccttctctttattctccctggagtgttagacaacctagtttgaagagtgt
gcagaggtgagctccttccatttcaggtggagtatgctacatacaacatc
accttcaatagccacagacggttccagtgtgcttaacaggggggcataag
tggcagtttgaagatgcatgggggattcaaggtgggttggaggacccact
gtggtttcatatttgtgtaaacttcactgtaaatcagcagttaataggga
ctcatatgcctggcccacagactgcagaagagtctctgtattgaaagaat
tggcagtttgaaaattcataccaggcgtgctcatcttctctgtgtcaaca
cttcagctaggcgctgggtgcgtcgccgtttagatgacttccttttcctg
taaaggaagaacgttcttagaatgagactaacagccgtgatcaaggtgta
tcacggaggaaatggcgctttacaggctgatgcttcacggatgtatggtc
agacccgtggagcaaatatacttttggggaataaaaaaccaatgtcttat
tcatatactgatgacttgtatgcccatccatttatgcatgtgatatcaac
agagtgatcctaagccaatggttcccagtcgatgtccagtagatagtagg
cttttgaaaactggcttataggctata
ccattgtaggttgtgcaagctactctagttgtgtgcagtggtggctgttc
tcggtttgactacatctggaactaaaacccaagcagctggggacacctgt
gcatggatttccttaattaaagcacgtgaagtgggaagagccatctttaa
tctgcgtcacacctgctggaggcaggctacataaataaaggacatggaag
aatgaagatgttgctcttttttccttccctccctccctccctccctccct
ccctcccccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52425596_52426780
seq2: B6Ng01-087I03.b_49_1225 (reverse)

seq1  TATAGCCCAT------GTTTTCTAAAAAGCCCATAACTACTCTACTGGGC  44
      ||||||| ||      ||||||  |||||||    |||| |||||||| |
seq2  TATAGCCTATAAGCCAGTTTTC--AAAAGCC---TACTA-TCTACTGGAC  44

seq1  ATCTGACTGGGAAACCATTGGCTTAGGATCACTCTAGTTTGATATCACAT  94
      ||| ||||||| |||||||||||||||||||||||   ||||||||||||
seq2  ATC-GACTGGG-AACCATTGGCTTAGGATCACTCT--GTTGATATCACAT  90

seq1  GCATTAAATGGATGGGCATAC-AGTCATCAGTATATGAATAAGACATTTG  143
      ||| ||||||||||||||||| |||||||||||||||||||||||||| |
seq2  GCA-TAAATGGATGGGCATACAAGTCATCAGTATATGAATAAGACATTGG  139

seq1  TTTTTTATT-CCCAAAAGTATAATTTTGCTCCACGGGTCTGACCATACAT  192
      ||||||||| ||||||||||||  ||||||||||||||||||||||||||
seq2  TTTTTTATTCCCCAAAAGTATA--TTTGCTCCACGGGTCTGACCATACAT  187

seq1  CCGTGAAGCATCAGCCTGTAAAAGCGCCATTTCCTCCGTGATACAACCTT  242
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  CCGTGAAGCATCAGCCTGT-AAAGCGCCATTTCCTCCGTGATAC-ACCTT  235

seq1  GATCACGGCTGTTAGTCTCATTTCTAAGAACGTTCTTCCTTTACAGGAAA  292
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GATCACGGCTGTTAGTCTCA-TTCTAAGAACGTTCTTCCTTTACAGGAAA  284

seq1  AGGAAGTCATCTAAACGGCGACGCACCCAGCGCCTAGCTGAAGTGTTGAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCATCTAAACGGCGACGCACCCAGCGCCTAGCTGAAGTGTTGAC  334

seq1  ACAGAGAAGATGAGCACGCCTGGTATGAATTTTCAAACTGCCAATTCTTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAGATGAGCACGCCTGGTATGAATTTTCAAACTGCCAATTCTTT  384

seq1  CAATACAGAGACTCTTCTGCAGTCTGTGGGCCAGGCATATGAGTCCCTAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGAGACTCTTCTGCAGTCTGTGGGCCAGGCATATGAGTCCCTAT  434

seq1  TAACTGCTGATTTACAGTGAAGTTTACACAAATATGAAACCACAGTGGGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTGATTTACAGTGAAGTTTACACAAATATGAAACCACAGTGGGT  484

seq1  CCTCCAACCCACCTTGAATCCCCCATGCATCTTCAAACTGCCACTTATGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACCCACCTTGAATCCCCCATGCATCTTCAAACTGCCACTTATGC  534

seq1  CCCCCTGTTAAGCACACTGGAACCGTCTGTGGCTATTGAAGGTGATGTTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGTTAAGCACACTGGAACCGTCTGTGGCTATTGAAGGTGATGTTG  584

seq1  TATGTAGCATACTCCACCTGAAATGGAAGGAGCTCACCTCTGCACACTCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCATACTCCACCTGAAATGGAAGGAGCTCACCTCTGCACACTCT  634

seq1  TCAAACTAGGTTGTCTAACACTCCAGGGAGAATAAAGAGAAGGAGATAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTAGGTTGTCTAACACTCCAGGGAGAATAAAGAGAAGGAGATAGG  684

seq1  GAAAAGTTATCTGCCTGTCAACAGTGGCATAATCTATTTAGCTGGTATCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTATCTGCCTGTCAACAGTGGCATAATCTATTTAGCTGGTATCT  734

seq1  ACTAGCATAAGAAAAGCCCAGGCAATCAGCTACTTCCGCTGTGCTGGACC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCATAAGAAAAGCCCAGGCAATCAGCTACTTCCGCTGTGCTGGACC  784

seq1  AAGTGTAGTAGCTGCAAACAATTCCTCCCTGGGTGGGACAAGCAGAGGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGTAGCTGCAAACAATTCCTCCCTGGGTGGGACAAGCAGAGGGA  834

seq1  CCAGACCAGGGAAGGCAGATTGACAGCTACCATCCTAGGAGGATGAGGGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCAGGGAAGGCAGATTGACAGCTACCATCCTAGGAGGATGAGGGG  884

seq1  TCTAAATGAACTCTTAGCAATCACTAGCACGGGGAGCTCTTCATGAGTTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGAACTCTTAGCAATCACTAGCACGGGGAGCTCTTCATGAGTTA  934

seq1  TTTTTATGTTTCTTCCTTCTCCTCTCAGGTGCTAAACGTGGCCACTCCTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTTTCTTCCTTCTCCTCTCAGGTGCTAAACGTGGCCACTCCTA  984

seq1  CTACCCCAGAACCCGTCATGGAAGAATAGATAGGGGAGAAATGTAAGTGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCAGAACCCGTCATGGAAGAATAGATAGGGGAGAAATGTAAGTGC  1034

seq1  TGACAACGTGTGTGTGCAGTAACTATTGGGTCAGAGGGCATGGGTGAGCC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACGTGTGTGTGCAGTAACTATTGGGTCAGAGGGCATGGGTGAGCC  1084

seq1  AAAGACTGTGGAAAATTTGCACTTGATTTCCCAGCAAGAAGAGCAAGGGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTGGAAAATTTGCACTTGATTTCCCAGCAAGAAGAGCAAGGGA  1134

seq1  CTGGTTTTACTTTGGTAAATAAAATGGGGGTTCCAGTGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTACTTTGGTAAATAAAATGGGGGTTCCAGTGAATTC  1177

seq1: chr2_52245617_52245884
seq2: B6Ng01-087I03.g_68_334

seq1  GAATTCCCATTGTAGGTTGTGCAAGCTACTCTAGTTGTGTGCAGTGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTGTAGGTTGTGCAAGCTACTCTAGTTGTGTGCAGTGGTGG  50

seq1  CTGTTCTCGGTTTGACTACATCTGGAACTAAAACCCAAGCAGCTGGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCGGTTTGACTACATCTGGAACTAAAACCCAAGCAGCTGGGGAC  100

seq1  ACCTGTGCATGGATTTCCTTAATTAAAGCACGTGAAGTGGGAAGAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCATGGATTTCCTTAATTAAAGCACGTGAAGTGGGAAGAGCCAT  150

seq1  CTTTAATCTGCGTCACACCTGCTGGAGGCAGGCTACATAAATAAAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCTGCGTCACACCTGCTGGAGGCAGGCTACATAAATAAAGGACA  200

seq1  TGGAAGAATGAAGATGTTGCTCTTTTTTCCTTCCCTCCCTCCCTCCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAATGAAGATGTTGCTCTTTTTTCCTTCCCTCCCTCCCTCCCTCC  250

seq1  CTCCCTCCCTCCCTCCCT  268
      ||||||||||||| ||||
seq2  CTCCCTCCCTCCC-CCCT  267