BAC Information

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BAC

Clone NameB6Ng01-087M09
Chromosome2 (Build37)
Map Location 26,853,617 - 27,011,893
singlet/doubletdoublet
Overlap geneAdamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik
Upstream geneUbadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4
Downstream geneDbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1, Fcnb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087M09.bB6Ng01-087M09.g
ACCDH900804DH900805
length1,083904
definitionDH900804|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M09, 5' end.DH900805|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,010,801 - 27,011,893)(26,853,617 - 26,854,316)
sequence
gaattcctggttctttgcagggcttgaggagggtgtacctcacagaactt
ctaatatctatatccttgtccatgcaattgcccccttgactggaaacatt
ttttgttctccagaactctccttgagaatggaagggagtaccagctattc
tccccgaaagtggacagaggtgtccactttcttgaaaggcaatggggaat
gtgtcttgaagggcaatggggaaacggaatgtggtggtttgaatgaaaat
agcccccataggctcatagggagtggcacaattagtaggtgtggccttgt
tgaaggaagtgtgtcactgggggtaggctttgaggtttcaaatgctcacg
tctggctcagtgtctctctttgcctgctgcctgtggattcagttgtagaa
cgctcagctccttctccagataccaggtggctttgcacctggctggtcat
gggccagcttaagggtataagccttatgtcttatttctggttgtcttaat
tggtttctggtggctgagcacattcaattgttttcctcggggcataggtg
taacccgaacaagcaatggaggatccagaggacccactagtgtgccactg
tggagggagcctatctctagtgttacactaaggatgtagcacaggggtag
aacacttgacttgcctgtgggaggtcctggaaggtgtgggacttgataca
gggtcatggaaaccaatcatgggatgaacagtggccaaggagtggggaac
aaagtggcaatggagagtagtggacagtgcccacggggtggggtggacga
caatggtcttggagtggatggaaagagtggtagaaagtagctgtgtgagc
tttgtggtcagagccactcagcttttgctttggcccagcatcttagctac
ttgcttgttcctggctgttattgaatcccttgacccctggctgttatttg
catcccttgacccctggctgagacccagggagcaccatggcatagcatga
ccatgcagctgctgactcagaaggagagagagcaacttcttctcatctac
tgagacacccacatgcttgggggagcctgtgtg
gaattctttaacctttacctctcaagtgtttgggatgctaggcatgtgcc
accacacccagctaaatctttgtttgtttgtttgttcgttccatgggaac
tgaaggcacatgtgagttctggttaccgctgaggtgtcagtgtggtcatt
ctgtaatctgcactgacctgtctatggtctctcttctttgtagggcacta
gtgtgggaagccgcccccacattcgccgtcacaagatggcgctgacatcc
tgtgttctaagttggtaaacaaataatctgcgcatgagccaagggtattt
acgactacttgtactctgtttttcccgtgaacgtcagctcggccatgggc
tgcagccaatcagggagtgatgcgtcctaggcaattgttgttctctttta
aatagaaggggtttcgtttttctctttttcttgcttcttacactctggcc
ccaaaaagatgtaagcaataaagctttgccgtagaagattctggttgttg
tgttcttcctggccggtcgtgagaacgcgacgaataacaattggtgccga
attccgggacgagaaaatccgggacgagaaaaaactccggactggcgcag
gagggatacttcatttcagaaccagaactgcggatcacgtttataaaggt
tcccgtaacacagactgttgagaaggattcaactgccgaattcagaactc
atcagctggggaacgacggtgataaaggtcccgtaaagcagactgttaag
aaggattcaactgtatgaattcagaacttttagctggggaacgagagtac
cagtgagtatgtttggccttgattttttctggtggtaggagccctttggt
tctttttcacatgctatcaggtgattaagatagggctgaaaattctagag
gaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_27010801_27011893
seq2: B6Ng01-087M09.b_44_1126 (reverse)

seq1  CACACAGGGCTCCCCAAGCATGTGCGTGTCTCCAAGTTAGATGGAGAAG-  49
      ||||||||   ||||||||||||| |||||||  || ||||| |||||| 
seq2  CACACAGGCTCCCCCAAGCATGTGGGTGTCTC--AG-TAGAT-GAGAAGA  46

seq1  AGTTGCTCTCTCTCCTTCCTTGAGGTCAGCAGCTGCCTGGTCACTGCTAT  99
      ||||||||||||||||||  ||| |||||||||||| |||||| ||||||
seq2  AGTTGCTCTCTCTCCTTC--TGA-GTCAGCAGCTGCATGGTCA-TGCTAT  92

seq1  GCCATGGTGGCCTCCCTGGGTCTCAGCCAGGGGTCAAGGGATGCAAATAA  149
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTG--CTCCCTGGGTCTCAGCCAGGGGTCAAGGGATGCAAATAA  140

seq1  CAGCCAGGGGTCAAGGGATTCAAATAACAGCCAGGAACAAGCAAGTAGCT  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGCCAGGGGTCAAGGGATTC-AATAACAGCCAGGAACAAGCAAGTAGCT  189

seq1  AAGATGCTGGGCCAAAGCAAAAGCTGAGTGGCTCTGACCACAAAGCTCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTGGGCCAAAGCAAAAGCTGAGTGGCTCTGACCACAAAGCTCAC  239

seq1  ACAGCTACTTTCTACCACTCTTTCCATCCACTCCAAGACCATTGTCGTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACTTTCTACCACTCTTTCCATCCACTCCAAGACCATTGTCGTCC  289

seq1  ACCCCACCCCGTGGGCACTGTCCACTACTCTCCATTGCCACTTTGTTCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCCCGTGGGCACTGTCCACTACTCTCCATTGCCACTTTGTTCCC  339

seq1  CACTCCTTGGCCACTGTTCATCCCATGATTGGTTTCCATGACCCTGTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTGGCCACTGTTCATCCCATGATTGGTTTCCATGACCCTGTATC  389

seq1  AAGTCCCACACCTTCCAGGACCTCCCACAGGCAAGTCAAGTGTTCTACCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCACACCTTCCAGGACCTCCCACAGGCAAGTCAAGTGTTCTACCC  439

seq1  CTGTGCTACATCCTTAGTGTAACACTAGAGATAGGCTCCCTCCACAGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTACATCCTTAGTGTAACACTAGAGATAGGCTCCCTCCACAGTGG  489

seq1  CACACTAGTGGGTCCTCTGGATCCTCCATTGCTTGTTCGGGTTACACCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAGTGGGTCCTCTGGATCCTCCATTGCTTGTTCGGGTTACACCTA  539

seq1  TGCCCCGAGGAAAACAATTGAATGTGCTCAGCCACCAGAAACCAATTAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCGAGGAAAACAATTGAATGTGCTCAGCCACCAGAAACCAATTAAG  589

seq1  ACAACCAGAAATAAGACATAAGGCTTATACCCTTAAGCTGGCCCATGACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGAAATAAGACATAAGGCTTATACCCTTAAGCTGGCCCATGACC  639

seq1  AGCCAGGTGCAAAGCCACCTGGTATCTGGAGAAGGAGCTGAGCGTTCTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTGCAAAGCCACCTGGTATCTGGAGAAGGAGCTGAGCGTTCTAC  689

seq1  AACTGAATCCACAGGCAGCAGGCAAAGAGAGACACTGAGCCAGACGTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATCCACAGGCAGCAGGCAAAGAGAGACACTGAGCCAGACGTGAG  739

seq1  CATTTGAAACCTCAAAGCCTACCCCCAGTGACACACTTCCTTCAACAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAACCTCAAAGCCTACCCCCAGTGACACACTTCCTTCAACAAGG  789

seq1  CCACACCTACTAATTGTGCCACTCCCTATGAGCCTATGGGGGCTATTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTACTAATTGTGCCACTCCCTATGAGCCTATGGGGGCTATTTTC  839

seq1  ATTCAAACCACCACATTCCGTTTCCCCATTGCCCTTCAAGACACATTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACCACCACATTCCGTTTCCCCATTGCCCTTCAAGACACATTCCC  889

seq1  CATTGCCTTTCAAGAAAGTGGACACCTCTGTCCACTTTCGGGGAGAATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTTTCAAGAAAGTGGACACCTCTGTCCACTTTCGGGGAGAATAG  939

seq1  CTGGTACTCCCTTCCATTCTCAAGGAGAGTTCTGGAGAACAAAAAATGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTCCCTTCCATTCTCAAGGAGAGTTCTGGAGAACAAAAAATGTT  989

seq1  TCCAGTCAAGGGGGCAATTGCATGGACAAGGATATAGATATTAGAAGTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCAAGGGGGCAATTGCATGGACAAGGATATAGATATTAGAAGTTC  1039

seq1  TGTGAGGTACACCCTCCTCAAGCCCTGCAAAGAACCAGGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTACACCCTCCTCAAGCCCTGCAAAGAACCAGGAATTC  1083

seq1: chr2_26853617_26854316
seq2: B6Ng01-087M09.g_70_769

seq1  GAATTCTTTAACCTTTACCTCTCAAGTGTTTGGGATGCTAGGCATGTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACCTTTACCTCTCAAGTGTTTGGGATGCTAGGCATGTGCC  50

seq1  ACCACACCCAGCTAAATCTTTGTTTGTTTGTTTGTTCGTTCCATGGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCCAGCTAAATCTTTGTTTGTTTGTTTGTTCGTTCCATGGGAAC  100

seq1  TGAAGGCACATGTGAGTTCTGGTTACCGCTGAGGTGTCAGTGTGGTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCACATGTGAGTTCTGGTTACCGCTGAGGTGTCAGTGTGGTCATT  150

seq1  CTGTAATCTGCACTGACCTGTCTATGGTCTCTCTTCTTTGTAGGGCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCTGCACTGACCTGTCTATGGTCTCTCTTCTTTGTAGGGCACTA  200

seq1  GTGTGGGAAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGAAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCC  250

seq1  TGTGTTCTAAGTTGGTAAACAAATAATCTGCGCATGAGCCAAGGGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTAAGTTGGTAAACAAATAATCTGCGCATGAGCCAAGGGTATTT  300

seq1  ACGACTACTTGTACTCTGTTTTTCCCGTGAACGTCAGCTCGGCCATGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTACTTGTACTCTGTTTTTCCCGTGAACGTCAGCTCGGCCATGGGC  350

seq1  TGCAGCCAATCAGGGAGTGATGCGTCCTAGGCAATTGTTGTTCTCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAATCAGGGAGTGATGCGTCCTAGGCAATTGTTGTTCTCTTTTA  400

seq1  AATAGAAGGGGTTTCGTTTTTCTCTTTTTCTTGCTTCTTACACTCTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGGGGTTTCGTTTTTCTCTTTTTCTTGCTTCTTACACTCTGGCC  450

seq1  CCAAAAAGATGTAAGCAATAAAGCTTTGCCGTAGAAGATTCTGGTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGATGTAAGCAATAAAGCTTTGCCGTAGAAGATTCTGGTTGTTG  500

seq1  TGTTCTTCCTGGCCGGTCGTGAGAACGCGACGAATAACAATTGGTGCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCCTGGCCGGTCGTGAGAACGCGACGAATAACAATTGGTGCCGA  550

seq1  ATTCCGGGACGAGAAAATCCGGGACGAGAAAAAACTCCGGACTGGCGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGGGACGAGAAAATCCGGGACGAGAAAAAACTCCGGACTGGCGCAG  600

seq1  GAGGGATACTTCATTTCAGAACCAGAACTGCGGATCACGTTTATAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATACTTCATTTCAGAACCAGAACTGCGGATCACGTTTATAAAGGT  650

seq1  TCCCGTAACACAGACTGTTGAGAAGGATTCAACTGCCGAATTCAGAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTAACACAGACTGTTGAGAAGGATTCAACTGCCGAATTCAGAACTC  700