BAC Information

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BAC

Clone NameB6Ng01-087N10
Chromosome2 (Build37)
Map Location 138,375,039 - 138,376,175
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N10.bB6Ng01-087N10.g
ACCDH900852DH900853
length1,2001,127
definitionDH900852|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N10, 5' end.DH900853|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ttgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtaaagttccttga
tccacttagatttgaccttagtacaaggagataggtatggatcgatttgc
attcttctacatgataacaaccagttgtgcgagcaccaagtgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttcttttgatggggattgcattgaatctgtaga
ttgcttttggcaagatagccatttttacaatgttgattctgccaatccat
gagcatgggagatctttccatcttctgtgatcttctttaaatttctttct
tcagagacttgaagtttttatcatacagatctttcacttcttagttagag
tcacgccaagatattttatattatttggtgactattgagaagggtgtgtt
tcccttaatttcttttctcagcctgtttattcttttgtgtagagaaggcc
atgacttgtttgagtttatttatatccagcctacttcaccgaggctgttt
atcaggttaagagttttcctggtggaattttagggtcacttatatatcta
tcatatcatctgcaaaaggtgaatttgacttcctccttttccatttaatc
ccatgatcctttggttgcgatggcctctgctaaatctcagattctagttg

gaattcccgcctataaaatcattcaatttgaaaaatcagttgttctttat
aagtacctgattatagaaatatggttttttaaaactattgttttaatatt
tgttgctccatcataccaattcaggaaagactcttattaaccaatttctc
ttatgaacatacatacaaataataataataataataataataataataat
aataataataaaagcaggatctgccaggatggatcctgtctttaaaaaaa
aaaatgcagggacaaaaatggagcagagactgaagaaaaggccattcaaa
gaccggcctaactaggatccatcccatgcgcaggcactaaacactgacac
tattactgatgttatattgtgcttgcagacagaagtttaacgtggctatc
ctctgagaggctctaccagcagctgacagagacagatacaaatacttcca
gccaaccattggaatgaggacagtcacctctatggaaaagttagggaaag
gatggaatgacttgaaagggatggccaccccataggaagaacagtaacta
acctggtcccctcagaattcccagagaccaagccaccaatcaaagagtat
acatgggttggcccatcacacacacacacacacacacacacacactgccc
tgcctggcttatatgtagcagaagactgccttgtctggcctcagtgggag
aggatgcacctaattctataaagacttgatgccccagggaagggacttgc
agggtggggaaaggcatagttggcaggggtcggggggagcaccctctcag
agacaaaggggaggggaaggatgaggtgaaaaattctgagggtgcagctg
ggaggaagggcaacagttgggaatgtaaataaataaaacaatttaattta
aaaaaagtctggtcatcagcactgtaaagcaaacacccccatcttcttcc
gattatttaaccccctgagactctcttttttcactctagtcaccctaata
tcccacaaaacggctaaaggcaaagatcttgagcctacttacgtcaacac
tgaccagagcccaactacacctattgactctaagccgttcgactccaggc
atttgacatttaataaaaagatcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138375039_138376175
seq2: B6Ng01-087N10.g_70_1196 (reverse)

seq1  TCAAGATCTTTTTTATTTAATGTCAAAATGGCCTGGAGTCGAACTGTGCT  50
      |||||||| |||||||| |||||||||   ||||||||||||||   |||
seq2  TCAAGATC-TTTTTATTAAATGTCAAA--TGCCTGGAGTCGAAC--GGCT  45

seq1  TAGATGTCAATATGGTTGGTAGTTGAGCTCTGTGTCAGTGTTGACTGTAA  100
      |||| ||||||| |||  ||||||| |||||| |||||||||||| ||||
seq2  TAGA-GTCAATA-GGT--GTAGTTGGGCTCTG-GTCAGTGTTGAC-GTAA  89

seq1  GTAGGCTCATAGATCTTTGCTTTTAGCCGTTTTGTGGGATATAGGGTTGA  150
      ||||||||| |||||||||| |||||||||||||||||||||  || |||
seq2  GTAGGCTCA-AGATCTTTGCCTTTAGCCGTTTTGTGGGATATTAGGGTGA  138

seq1  CTAGAGTGGAAAAAAGAGAGTCTCAGGGGGTTAATAAATCGG-AGAAGAT  199
      ||||||| ||||||||||||||||||||||||||  |||||| |||||||
seq2  CTAGAGT-GAAAAAAGAGAGTCTCAGGGGGTTAAATAATCGGAAGAAGAT  187

seq1  -GGGGTGTTTGCTTTACAGTGCTGATGACCAGACTTTTTTTTAAATTAAA  248
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGGGTGTTTGCTTTACAGTGCTGATGACCAGAC-TTTTTTTAAATTAAA  236

seq1  TTGTTTTATTTATTTACATT-CCAACTGTTGCCCTTCCTCCCAGCTGCAC  297
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGTTTTATTTATTTACATTCCCAACTGTTGCCCTTCCTCCCAGCTGCAC  286

seq1  CCTCAGAATTTTTCACCTCATCCTT-CCCTCCCCTTTGTCTCTGAGAGGG  346
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTCAGAATTTTTCACCTCATCCTTCCCCTCCCCTTTGTCTCTGAGAGGG  336

seq1  TGCTCCCCCCGACCCCTGCCAACTATGCCTTTCCCCACCCTGCAAGTCCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCCCGACCCCTGCCAACTATGCCTTTCCCCACCCTGCAAGTCCC  386

seq1  TTCCCTGGGGCATCAAGTCTTTATAGAATTAGGTGCATCCTCTCCCACTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGGGCATCAAGTCTTTATAGAATTAGGTGCATCCTCTCCCACTG  436

seq1  AGGCCAGACAAGGCAGTCTTCTGCTACATATAAGCCAGGCAGGGCAGTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGACAAGGCAGTCTTCTGCTACATATAAGCCAGGCAGGGCAGTGT  486

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGATGGGCCAACCCATGTATACTCTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGATGGGCCAACCCATGTATACTCTTT  536

seq1  GATTGGTGGCTTGGTCTCTGGGAATTCTGAGGGGACCAGGTTAGTTACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTGGCTTGGTCTCTGGGAATTCTGAGGGGACCAGGTTAGTTACTG  586

seq1  TTCTTCCTATGGGGTGGCCATCCCTTTCAAGTCATTCCATCCTTTCCCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTATGGGGTGGCCATCCCTTTCAAGTCATTCCATCCTTTCCCTA  636

seq1  ACTTTTCCATAGAGGTGACTGTCCTCATTCCAATGGTTGGCTGGAAGTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCATAGAGGTGACTGTCCTCATTCCAATGGTTGGCTGGAAGTAT  686

seq1  TTGTATCTGTCTCTGTCAGCTGCTGGTAGAGCCTCTCAGAGGATAGCCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTGTCTCTGTCAGCTGCTGGTAGAGCCTCTCAGAGGATAGCCAC  736

seq1  GTTAAACTTCTGTCTGCAAGCACAATATAACATCAGTAATAGTGTCAGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTTCTGTCTGCAAGCACAATATAACATCAGTAATAGTGTCAGTG  786

seq1  TTTAGTGCCTGCGCATGGGATGGATCCTAGTTAGGCCGGTCTTTGAATGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGCCTGCGCATGGGATGGATCCTAGTTAGGCCGGTCTTTGAATGG  836

seq1  CCTTTTCTTCAGTCTCTGCTCCATTTTTGTCCCTGCATTTTTTTTTTTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTCAGTCTCTGCTCCATTTTTGTCCCTGCATTTTTTTTTTTAA  886

seq1  AGACAGGATCCATCCTGGCAGATCCTGCTTTTATTATTATTATTATTATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATCCATCCTGGCAGATCCTGCTTTTATTATTATTATTATTATT  936

seq1  ATTATTATTATTATTATTATTATTTGTATGTATGTTCATAAGAGAAATTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTATTATTATTTGTATGTATGTTCATAAGAGAAATTG  986

seq1  GTTAATAAGAGTCTTTCCTGAATTGGTATGATGGAGCAACAAATATTAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAAGAGTCTTTCCTGAATTGGTATGATGGAGCAACAAATATTAAA  1036

seq1  ACAATAGTTTTAAAAAACCATATTTCTATAATCAGGTACTTATAAAGAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTTTTAAAAAACCATATTTCTATAATCAGGTACTTATAAAGAAC  1086

seq1  AACTGATTTTTCAAATTGAATGATTTTATAGGCGGGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTTTCAAATTGAATGATTTTATAGGCGGGAATTC  1127