BAC Information

Click to search

BAC

Clone NameB6Ng01-087N22
Chromosome2 (Build37)
Map Location 146,213,587 - 146,347,179
singlet/doubletdoublet
Overlap geneA230067G21Rik
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N22.bB6Ng01-087N22.g
ACCDH900876DH900877
length1,1151,146
definitionDH900876|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N22, 5' end.DH900877|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,346,061 - 146,347,179)(146,213,587 - 146,214,759)
sequence
gaattcaaggcaggagcttgaagtagaagtaggaaccatggatggacgct
gctgcttcaccggtttgtttagttacccttcttatataagccaggctcac
ctacggtaggcatggaccacccacagtgcgatgagccctcccacatcaat
cagcaatcaagaaaatgcctcacagacccgctcacaggccaatcagatgc
agacaattcctcaactgaggttccctctttccaggtgcctctagtttggg
tcaagttgacaaagacttgagacatctaccaaaacctcctaaacaaaatc
aatattccataaagatgaaatgcaaagtccagtgctgaaagagcaaggag
cacagctggacatggtggtacacatagttaatcccagcgcttgaaagatg
gaggcaagagggatttaaattctaagccagcctgtaccagacaacctaac
caaaaaagaaaaaagttttttccttataactcaatgcattgcagatgtgt
accttttcctcctaaaatattgcccattagtttcttttttttaaataaaa
aattcttagttttctctctttaaaatatctgtcaagaccagacatttaat
acttaactttaaacttgactataaatcattttatatgagaatttcactca
aagacagacatgaaatgttttttgggttttggattttgattttgtttttt
gtaagtgcactagccattttgatgtgtctgacaggtttctgataagaaag
gaatgtctgaagggaagaaacaatcatttttctgtatttactcaagcaaa
atttcccagttattcacttgaaatcctgccacactgaaagaccctttgag
gaagaaaaatttgagcacaaagtgttaggataactaaactttaggataac
tttattttttggacctacagtgttggtcaacctaatcacctagaaatccc
aaatatcaagatcaaaagatgagcgcggtgtatcagatagtggggactta
gtgtttgggcacgtgtatctgatagtggggacttagtgctgagcagagtc
cagtggagaagaatgaaggagtatctgccaagcaatttcttccttgtcag
caacacattaagaag
gaattcttgtccttttaagttgtgttttgcttactacatgtagttgaaac
tctaaacacaaaagaatggaattgttattctaatgtgtgaacacctagag
agattctgaaccccggggtggtaagaaatgatttcataaattatgctata
tgaatataggtcatgttttgaaaaaatatttaataatggaaaatatattt
agtataaaaataaaagtcgggatgaaatctgtatctgttctaagagtaaa
ctcttagttttgtaaaatgtttttatccatggaaataaatatattttcat
atcaatactggttatcctataaaatggatctataagtatcttcttgcttt
tctatttcccaactttatacaatcaaaataatatcactttactaaaatga
ataatgagaccacatagtatcctattttaatatcttctactaacatacat
ttggactaaatgaaataactctcaggcatttagtaaagcattaaaactac
agatactatgatttattcttgagcaatcaaatatacttctaaacgtctaa
tttgcatttcagaaatggtcaatagtttgtatattaaatgattcaagcta
acttttctggattagtataaaaggtaacatcagaacacaccttggccagt
ttataccacagttcatagagatagccaaaaactttggcatggatcttcgg
cgactggatgttattcacatctccaaggattcccaagactcttcgccata
acacagcagcggagtctgggtgccaaccagtgaggtttcctccagcaata
atgctacagtcgtctgcaaggcattctctgctgtctgtggagaaagtgtc
aacatgatcttgacttaatcatcatagtatttttaaagcattattgcaat
tacctgtgcttaaatttatgaattcttggtaaagaattagattaaaaatt
gtttagaatttgatggacagaaaagatatctgttagtcaaacacttgatc
tttcaaatgatgccacaagaaataatgtacatggggtgatcatgtgagaa
ttttatgagcagcagatgagggggattttgaaacaatgagtacatgatag
caggcaactctaagtctaggtacagaactcttgtgattgggtggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146346061_146347179
seq2: B6Ng01-087N22.b_49_1163 (reverse)

seq1  CTTCTTATATTGTTGTTGCTG-CAAAGGAGAAA-TGCCTGGCAGATACT-  47
      ||||||| ||   |||||||| ||| | ||||| ||| ||||||||||| 
seq2  CTTCTTA-AT--GTGTTGCTGACAAGGAAGAAATTGCTTGGCAGATACTC  47

seq1  CTTCATCTTCCTCCACTGGACTCTTGCTCAAACACTAAGTCCCCACTATC  97
      ||||||  | ||||||||||||| ||||| | ||||||||||||||||||
seq2  CTTCATTCTTCTCCACTGGACTC-TGCTC-AGCACTAAGTCCCCACTATC  95

seq1  AGATACACCGTGCCCAAACACTAAGTCCCCACTATCTGATACACCGCGCT  147
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACA-CGTGCCCAAACACTAAGTCCCCACTATCTGATACACCGCGCT  144

seq1  CATCTTTTGATCTTTGATATTTGGGATTTCTAGGTGATTAGGTTGACCAA  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTGATC-TTGATATTTGGGATTTCTAGGTGATTAGGTTGACCAA  193

seq1  CACTGTAGGTCCAAAAAATAAAGTTATCCTAAAGTTTAGTTATCCTAACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGGTCCAAAAAATAAAGTTATCCTAAAGTTTAGTTATCCTAACA  243

seq1  CTTTGTGCTCAAATTTTTCTTCCTCAAAGGGTCTTTCAGTGTGGCAGGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCTCAAATTTTTCTTCCTCAAAGGGTCTTTCAGTGTGGCAGGAT  293

seq1  TTCAAGTGAATAACTGGGAAATTTTGCTTGAGTAAATACAGAAAAATGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGAATAACTGGGAAATTTTGCTTGAGTAAATACAGAAAAATGAT  343

seq1  TGTTTCTTCCCTTCAGACATTCCTTTCTTATCAGAAACCTGTCAGACACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCCCTTCAGACATTCCTTTCTTATCAGAAACCTGTCAGACACA  393

seq1  TCAAAATGGCTAGTGCACTTACAAAAAACAAAATCAAAATCCAAAACCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGGCTAGTGCACTTACAAAAAACAAAATCAAAATCCAAAACCCA  443

seq1  AAAAACATTTCATGTCTGTCTTTGAGTGAAATTCTCATATAAAATGATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTTCATGTCTGTCTTTGAGTGAAATTCTCATATAAAATGATTT  493

seq1  ATAGTCAAGTTTAAAGTTAAGTATTAAATGTCTGGTCTTGACAGATATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAAGTTTAAAGTTAAGTATTAAATGTCTGGTCTTGACAGATATTT  543

seq1  TAAAGAGAGAAAACTAAGAATTTTTTATTTAAAAAAAAGAAACTAATGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGAAAACTAAGAATTTTTTATTTAAAAAAAAGAAACTAATGGG  593

seq1  CAATATTTTAGGAGGAAAAGGTACACATCTGCAATGCATTGAGTTATAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTAGGAGGAAAAGGTACACATCTGCAATGCATTGAGTTATAAG  643

seq1  GAAAAAACTTTTTTCTTTTTTGGTTAGGTTGTCTGGTACAGGCTGGCTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACTTTTTTCTTTTTTGGTTAGGTTGTCTGGTACAGGCTGGCTTA  693

seq1  GAATTTAAATCCCTCTTGCCTCCATCTTTCAAGCGCTGGGATTAACTATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAATCCCTCTTGCCTCCATCTTTCAAGCGCTGGGATTAACTATG  743

seq1  TGTACCACCATGTCCAGCTGTGCTCCTTGCTCTTTCAGCACTGGACTTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACCATGTCCAGCTGTGCTCCTTGCTCTTTCAGCACTGGACTTTG  793

seq1  CATTTCATCTTTATGGAATATTGATTTTGTTTAGGAGGTTTTGGTAGATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATCTTTATGGAATATTGATTTTGTTTAGGAGGTTTTGGTAGATG  843

seq1  TCTCAAGTCTTTGTCAACTTGACCCAAACTAGAGGCACCTGGAAAGAGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTCTTTGTCAACTTGACCCAAACTAGAGGCACCTGGAAAGAGGG  893

seq1  AACCTCAGTTGAGGAATTGTCTGCATCTGATTGGCCTGTGAGCGGGTCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAGTTGAGGAATTGTCTGCATCTGATTGGCCTGTGAGCGGGTCTG  943

seq1  TGAGGCATTTTCTTGATTGCTGATTGATGTGGGAGGGCTCATCGCACTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATTTTCTTGATTGCTGATTGATGTGGGAGGGCTCATCGCACTGT  993

seq1  GGGTGGTCCATGCCTACCGTAGGTGAGCCTGGCTTATATAAGAAGGGTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTCCATGCCTACCGTAGGTGAGCCTGGCTTATATAAGAAGGGTAA  1043

seq1  CTAAACAAACCGGTGAAGCAGCAGCGTCCATCCATGGTTCCTACTTCTAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAAACCGGTGAAGCAGCAGCGTCCATCCATGGTTCCTACTTCTAC  1093

seq1  TTCAAGCTCCTGCCTTGAATTC  1119
      ||||||||||||||||||||||
seq2  TTCAAGCTCCTGCCTTGAATTC  1115

seq1: chr2_146213587_146214759
seq2: B6Ng01-087N22.g_68_1213

seq1  GAATTCTTGTCCTTTTAAGTTGTGTTTTGCTTACTACATGTAGTTGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCCTTTTAAGTTGTGTTTTGCTTACTACATGTAGTTGAAAC  50

seq1  TCTAAACACAAAAGAATGGAATTGTTATTCTAATGTGTGAACACCTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACACAAAAGAATGGAATTGTTATTCTAATGTGTGAACACCTAGAG  100

seq1  AGATTCTGAACCCCGGGGTGGTAAGAAATGATTTCATAAATTATGCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGAACCCCGGGGTGGTAAGAAATGATTTCATAAATTATGCTATA  150

seq1  TGAATATAGGTCATGTTTTGAAAAAATATTTAATAATGGAAAATATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAGGTCATGTTTTGAAAAAATATTTAATAATGGAAAATATATTT  200

seq1  AGTATAAAAATAAAAGTCGGGATGAAATCTGTATCTGTTCTAAGAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAAATAAAAGTCGGGATGAAATCTGTATCTGTTCTAAGAGTAAA  250

seq1  CTCTTAGTTTTGTAAAATGTTTTTATCCATGGAAATAAATATATTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTTTTGTAAAATGTTTTTATCCATGGAAATAAATATATTTTCAT  300

seq1  ATCAATACTGGTTATCCTATAAAATGGATCTATAAGTATCTTCTTGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATACTGGTTATCCTATAAAATGGATCTATAAGTATCTTCTTGCTTT  350

seq1  TCTATTTCCCAACTTTATACAATCAAAATAATATCACTTTACTAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCCCAACTTTATACAATCAAAATAATATCACTTTACTAAAATGA  400

seq1  ATAATGAGACCACATAGTATCCTATTTTAATATCTTCTACTAACATACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGACCACATAGTATCCTATTTTAATATCTTCTACTAACATACAT  450

seq1  TTGGACTAAATGAAATAACTCTCAGGCATTTAGTAAAGCATTAAAACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTAAATGAAATAACTCTCAGGCATTTAGTAAAGCATTAAAACTAC  500

seq1  AGATACTATGATTTATTCTTGAGCAATCAAATATACTTCTAAACGTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTATGATTTATTCTTGAGCAATCAAATATACTTCTAAACGTCTAA  550

seq1  TTTGCATTTCAGAAATGGTCAATAGTTTGTATATTAAATGATTCAAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTCAGAAATGGTCAATAGTTTGTATATTAAATGATTCAAGCTA  600

seq1  ACTTTTCTGGATTAGTATAAAAGGTAACATCAGAACACACCTTGGCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTGGATTAGTATAAAAGGTAACATCAGAACACACCTTGGCCAGT  650

seq1  TTATACCACAGTTCATAGAGATAGCCAAAAACTTTGGCATGGATCTTCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCACAGTTCATAGAGATAGCCAAAAACTTTGGCATGGATCTTCGG  700

seq1  CGACTGGATGTTATTCACATCTCCAAGGATTCCCAAGACTCTTCGCCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGGATGTTATTCACATCTCCAAGGATTCCCAAGACTCTTCGCCATA  750

seq1  ACACAGCAGCGGAGTCTGGGTGCCAACCAGTGAGGTTTCCTCCAGCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGCGGAGTCTGGGTGCCAACCAGTGAGGTTTCCTCCAGCAATA  800

seq1  ATGCTACAGTCGTCTGCAAGGCATTCTCTGCTGTCTGTGGAGAAAGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACAGTCGTCTGCAAGGCATTCTCTGCTGTCTGTGGAGAAAGTGTC  850

seq1  AACATGATCTTGACTTAATCATCATAGTATTTTTAAAGCATTATTGCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACATGATCTTGACTTAATCATCATAGTATTTTTAAAGCATTATTGC-AA  899

seq1  TTACCTGTGCTTAAATTTTATGAATTCTTGGTAAAGAAATTAAGATTAAA  950
      ||||||||||||||| ||||||||||||||||||||||  | ||||| ||
seq2  TTACCTGTGCTTAAA-TTTATGAATTCTTGGTAAAGAA--TTAGATT-AA  945

seq1  AAATTGTTTAGAATTTGATGGAACAGGAAAAGATAATCTGTTAAGGTCAA  1000
      ||||||||||||||||||||| ||| |||||||| ||||||||  |||||
seq2  AAATTGTTTAGAATTTGATGG-ACA-GAAAAGAT-ATCTGTTA--GTCAA  990

seq1  ACACTTGATTCTTTCAAATTGAATGCCCAACAAGAAATAATGTACAATGG  1050
      |||||||| ||||||||||   |||||  |||||||||||||||| ||||
seq2  ACACTTGA-TCTTTCAAAT--GATGCC--ACAAGAAATAATGTAC-ATGG  1034

seq1  GGTGATCATGTGAAGATTTTATGAAGCAGGCAAGATGAGGGAGATTTTGA  1100
      |||||||||||||  |||||||| |||||   ||||||||| ||||||||
seq2  GGTGATCATGTGAGAATTTTATG-AGCAG--CAGATGAGGGGGATTTTGA  1081

seq1  ATACGATGAGTACCATGATAGCAGGCGACCCAGAGTCTTAGGGTACAGAA  1150
      | || ||||||| ||||||||||||| || |  |||||   |||||||||
seq2  A-ACAATGAGTA-CATGATAGCAGGCAACTCTAAGTCT--AGGTACAGAA  1127

seq1  ACATCTGTGTTGGTTGGGTGGTT  1173
          || |  || ||||||||||
seq2  ----CTCTTGTGATTGGGTGGTT  1146