BAC Information

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BAC

Clone NameB6Ng01-087P16
Chromosome2 (Build37)
Map Location 21,890,671 - 22,024,912
singlet/doubletdoublet
Overlap geneLOC637235
Upstream geneLOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
Downstream geneMyo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087P16.bB6Ng01-087P16.g
ACCDH900958DH900959
length1,2201,100
definitionDH900958|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P16, 5' end.DH900959|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,023,676 - 22,024,912)(21,890,671 - 21,891,727)
sequence
gaattctacatgttgatttgaaggcagccaggaagaaggtctcattctgc
actggatagagcttgagaatttagagacctcaaagcccaccccaacagtg
atgtacttcctccaaggccacacctcctagtagtgccactctccatagac
caagtattcaaacacaagagtctacagggccaaagctattcaaaccacca
taccacccgcctttaatctttccttctttccttcctaattgttttattac
ctactttgtggcagtttcttttctagaccttatggaatattcttaggtta
ttacaggcctgcttttctggggattgtcaaagtttggtctctgtgcttgc
ctcacttgttcaccatgacctaagcagtttactttgcaaacatgcttcgt
atcattgaaatctggcatccagaaacatgcctaatgcaaagggtccatct
gtttgtgaactggaacactcagaactgttcgctgacaacccttttctctt
tcaggtaaaccatctcaagtagttcagtataatgataaaaattagcacac
tgatcaccagtgttctgagatctttttcaatgctttccactacttctgct
caggataatgccttcttttcatcccatcccactccctaatgggacaaggg
agccgtttgtcttagaaagatagaaccaaatttttttttcattattccga
taacctcacaaactatatgagaaaagttcctgtacatctgatgagaaatt
ggaaccaaaagttatcacggtcatgaagacagaataaacttgtcttacaa
gctcttgggtgatttggcactttggtatgttccttactggtataatgaaa
agttcttgctctaaataaagatgtccctcagtactggcatgtagctcact
ggtggaacacttcttgaatgttaaaaaaataaaagaagaaagaaagaaat
ttttaaaggatggaatgagcccaggacatctattatacccagcacaggaa
tacggcttattgaatcctgccaactacaggacatggctgtttttatttta
agagctttttctattattaattctagtctatcacagaaatgtaaattatt
gcatgcacctcttcttatgttggacttttctattgtgggaggtgtaatat
cattttgaggaggaaacaatagtccattagttgcatctagaacgtatgga
acactagctgttaaatataa
gaattctttgtttagctctgtgtcctatttttaaattgggctatttgagt
tgttgatgtctaacttcttgagttctttgtaaattttggatattaacact
ctgtcagatgtagaattagtgaagatcgttacacaatctataggctgcca
ttttgtcttattaacagggtcctctgtctttgagaagcttttcagtttca
tgaggtcccatttatcaattattgatcttctagcctgaaccactggtgtt
ctgttcaagaaagtgtctgctgtaccaatgtgttcaaggatatttcccac
tttatgttctatgatatttagtgtatgaggttttatgtcgaggtcttgat
ccacttagacttgagttttgtgcaggatgttaaatatggatcttttttca
ttcttctacatttagacattcaattacaccatttgttgatgatgcttttg
tttctctattgtatggttttggcttctttataaaaaataaagtatccata
attgtttggctttattttctgggtctttgatttgattccattgatgaaca
tgcatatttctaggcatattttatatttctaagacaaaaactaggaacca
ggttgtgaaagctaaacttctggttctgccttaatcaattttaccttcct
gtgcttcagttttatttatggaagaagagaaatgactgtatctactttgt
catagggattggatatatgcagagtgttaatacagtgaacatggctaatg
aatattagctattcccatagtgatttatgcctaaatatagcttcacatct
catacataattctagagtttttctagctatgtttttaaagacatgattga
ctataatacttgagtatgacttagcttctgttgtatacttttgggttaca
tttattatttatttatttatttatttatttatttatttagtacatatacc
atttggagatcagtagatacttggatgagttgatttttttttctctacca
tgggaaccaggataaaactcagttggtcaggctaacctcagtttgttact
aatgagccatcttgtcagcttctgggttttgaggtttgatctttttatac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_22023676_22024912
seq2: B6Ng01-087P16.b_47_1266 (reverse)

seq1  TTAT-TTTACCAGCTTAGTGTTCCATACGTTTCTAAGATGCCAACTTAAA  49
      |||| |||| |||| |||||||||||||| |||| ||||| |||||   |
seq2  TTATATTTAACAGC-TAGTGTTCCATACG-TTCT-AGATG-CAACT---A  43

seq1  ATTGACTATTGTTTCTCCTCCTCAAAAAATAGAAATAATTACAC--TCCA  97
      || ||||||||||  ||||||||||||    ||    |||||||   |||
seq2  ATGGACTATTGTT--TCCTCCTCAAAA---TGA---TATTACACCTCCCA  85

seq1  C-ATAG-AAAGTCCAAACATAAG-AGA-GTGCATTGCAATAATTTACATT  143
      | |||| ||||||| |||||||| ||| ||||| ||||||||||||||||
seq2  CAATAGAAAAGTCC-AACATAAGAAGAGGTGCA-TGCAATAATTTACATT  133

seq1  TCTGTTGATAGACTAGAAATTTATAATAGAAAAGCTTCTTAAAATAAAAA  193
      |||| ||||||||||| |||| |||||||||||   ||||||||||||||
seq2  TCTG-TGATAGACTAG-AATTAATAATAGAAAAAGCTCTTAAAATAAAAA  181

seq1  CAGCCCATGTCCTGTAGTTGGCAGGATTCAATAAGCCCGTATTCCTGTGC  243
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAG-CCATGTCCTGTAGTTGGCAGGATTCAATAAG-CCGTATTCCTGTGC  229

seq1  TGGGTATAATTAGATGTCCTGGGCTCATTCCATCCTTTTAAAAATTTCTT  293
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGTATAA-TAGATGTCCTGGGCTCATTCCATCC-TTTAAAAATTTCTT  277

seq1  TCTTTCTTTCTTTTATTTTTTTTAACATTCAAGAAGTGTTCCACCAGTGA  343
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTTC-TTCTTTTA-TTTTTTTAACATTCAAGAAGTGTTCCACCAGTGA  325

seq1  GCTACATGCCAGTACTGAGGGACATCTTTATTTAGAGCAAGAACTTTTCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGCCAGTACTGAGGGACATCTTTATTTAGAGCAAGAACTTTTCA  375

seq1  TTATACCAGTAAGGAACATACC-AAGTGCCAAATCACCCAAGAGCTTGTA  442
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTATACCAGTAAGGAACATACCAAAGTGCCAAATCACCCAAGAGCTTGTA  425

seq1  AGACAAGTTTATTCTGTCTTCATGACCGTGATAACTTTTGGTTCCAATTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTTTATTCTGTCTTCATGACCGTGATAACTTTTGGTTCCAATTT  475

seq1  CTCATCAGATGTACAGGAACTTTTCTCATATAGTTTGTGAGGTTATCGGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGATGTACAGGAACTTTTCTCATATAGTTTGTGAGGTTATCGGA  525

seq1  ATAATGAAAAAAAAATTTGGTTCTATCTTTCTAAGACAAACGGCTCCCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAAAAAAAATTTGGTTCTATCTTTCTAAGACAAACGGCTCCCTT  575

seq1  GTCCCATTAGGGAGTGGGATGGGATGAAAAGAAGGCATTATCCTGAGCAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATTAGGGAGTGGGATGGGATGAAAAGAAGGCATTATCCTGAGCAG  625

seq1  AAGTAGTGGAAAGCATTGAAAAAGATCTCAGAACACTGGTGATCAGTGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTGGAAAGCATTGAAAAAGATCTCAGAACACTGGTGATCAGTGTG  675

seq1  CTAATTTTTATCATTATACTGAACTACTTGAGATGGTTTACCTGAAAGAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTTATCATTATACTGAACTACTTGAGATGGTTTACCTGAAAGAG  725

seq1  AAAAGGGTTGTCAGCGAACAGTTCTGAGTGTTCCAGTTCACAAACAGATG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTTGTCAGCGAACAGTTCTGAGTGTTCCAGTTCACAAACAGATG  775

seq1  GACCCTTTGCATTAGGCATGTTTCTGGATGCCAGATTTCAATGATACGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTTGCATTAGGCATGTTTCTGGATGCCAGATTTCAATGATACGAA  825

seq1  GCATGTTTGCAAAGTAAACTGCTTAGGTCATGGTGAACAAGTGAGGCAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTGCAAAGTAAACTGCTTAGGTCATGGTGAACAAGTGAGGCAAG  875

seq1  CACAGAGACCAAACTTTGACAATCCCCAGAAAAGCAGGCCTGTAATAACC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGACCAAACTTTGACAATCCCCAGAAAAGCAGGCCTGTAATAACC  925

seq1  TAAGAATATTCCATAAGGTCTAGAAAAGAAACTGCCACAAAGTAGGTAAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATATTCCATAAGGTCTAGAAAAGAAACTGCCACAAAGTAGGTAAT  975

seq1  AAAACAATTAGGAAGGAAAGAAGGAAAGATTAAAGGCGGGTGGTATGGTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTAGGAAGGAAAGAAGGAAAGATTAAAGGCGGGTGGTATGGTG  1025

seq1  GTTTGAATAGCTTTGGCCCTGTAGACTCTTGTGTTTGAATACTTGGTCTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATAGCTTTGGCCCTGTAGACTCTTGTGTTTGAATACTTGGTCTA  1075

seq1  TGGAGAGTGGCACTACTAGGAGGTGTGGCCTTGGAGGAAGTACATCACTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTGGCACTACTAGGAGGTGTGGCCTTGGAGGAAGTACATCACTG  1125

seq1  TTGGGGTGGGCTTTGAGGTCTCTAAATTCTCAAGCTCTATCCAGTGCAGA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGGGCTTTGAGGTCTCTAAATTCTCAAGCTCTATCCAGTGCAGA  1175

seq1  ATGAGACCTTCTTCCTGGCTGCCTTCAAATCAACATGTAGAATTC  1237
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACCTTCTTCCTGGCTGCCTTCAAATCAACATGTAGAATTC  1220

seq1: chr2_21890671_21891727
seq2: B6Ng01-087P16.g_132_1170

seq1  AACTTCTTGAGTTCTTTGTAAATTTTGGATATTAACACTCTGTCAGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTGAGTTCTTTGTAAATTTTGGATATTAACACTCTGTCAGATGT  50

seq1  AGAATTAGTGAAGATCGTTACACAATCTATAGGCTGCCATTTTGTCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGTGAAGATCGTTACACAATCTATAGGCTGCCATTTTGTCTTAT  100

seq1  TAACAGGGTCCTCTGTCTTTGAGAAGCTTTTCAGTTTCATGAGGTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGGTCCTCTGTCTTTGAGAAGCTTTTCAGTTTCATGAGGTCCCAT  150

seq1  TTATCAATTATTGATCTTCTAGCCTGAACCACTGGTGTTCTGTTCAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATTATTGATCTTCTAGCCTGAACCACTGGTGTTCTGTTCAAGAA  200

seq1  AGTGTCTGCTGTACCAATGTGTTCAAGGATATTTCCCACTTTATGTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGCTGTACCAATGTGTTCAAGGATATTTCCCACTTTATGTTCTA  250

seq1  TGATATTTAGTGTATGAGGTTTTATGTCGAGGTCTTGATCCACTTAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTAGTGTATGAGGTTTTATGTCGAGGTCTTGATCCACTTAGACT  300

seq1  TGAGTTTTGTGCAGGATGTTAAATATGGATCTTTTTTCATTCTTCTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTGTGCAGGATGTTAAATATGGATCTTTTTTCATTCTTCTACAT  350

seq1  TTAGACATTCAATTACACCATTTGTTGATGATGCTTTTGTTTCTCTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATTCAATTACACCATTTGTTGATGATGCTTTTGTTTCTCTATTG  400

seq1  TATGGTTTTGGCTTCTTTATAAAAAATAAAGTATCCATAATTGTTTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTGGCTTCTTTATAAAAAATAAAGTATCCATAATTGTTTGGCT  450

seq1  TTATTTTCTGGGTCTTTGATTTGATTCCATTGATGAACATGCATATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTGGGTCTTTGATTTGATTCCATTGATGAACATGCATATTTCT  500

seq1  AGGCATATTTTATATTTCTAAGACAAAAACTAGGAACCAGGTTGTGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATTTTATATTTCTAAGACAAAAACTAGGAACCAGGTTGTGAAAG  550

seq1  CTAAACTTCTGGTTCTGCCTTAATCAATTTTACCTTCCTGTGCTTCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTCTGGTTCTGCCTTAATCAATTTTACCTTCCTGTGCTTCAGTT  600

seq1  TTATTTATGGAAGAAGAGAAATGACTGTATCTACTTTGTCATAGGGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGGAAGAAGAGAAATGACTGTATCTACTTTGTCATAGGGATTG  650

seq1  GATATATGCAGAGTGTTAATACAGTGAACATGGCTAATGAATATTAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGCAGAGTGTTAATACAGTGAACATGGCTAATGAATATTAGCTA  700

seq1  TTCCCATAGTGATTTATGCCTAAATATAGCTTCACATCTCATACATAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATAGTGATTTATGCCTAAATATAGCTTCACATCTCATACATAATT  750

seq1  CTAGAGTTTTTCTAGCTATGTTTTTAAAGACATGATTGACTATAATACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTTTTTCTAGCTATGTTTTTAAAGACATGATTGACTATAATACTT  800

seq1  GAGTATGACTTAGCTTCTGTTGTATACTTTTGGGTTACATTTATTTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGTATGACTTAGCTTCTGTTGTATACTTTTGGGTTACATTTA-TTATTT  849

seq1  ATTTATTTATTTATTTATTTATTTATTTAGTACATATACCATTTGGAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTATTTATTTAGTACATATACCATTTGGAGAT  899

seq1  CAGTAGATAACTTGGATGAGTTGTTTTTTTTTTTTTTTTTCTTCTACCAT  950
      |||||||| |||||||||||||| |||||||||         ||||||||
seq2  CAGTAGAT-ACTTGGATGAGTTGATTTTTTTTT--------CTCTACCAT  940

seq1  GTGGAACCCAGGATAAAACTCAGTTTGTCAGGCCTAACCTCAAGTTTGTT  1000
      | |||| |||||||||||||||||| |||||| |||||||| ||||||||
seq2  G-GGAA-CCAGGATAAAACTCAGTTGGTCAGG-CTAACCTC-AGTTTGTT  986

seq1  TACCAAATGAGCCATCTTGTCAGTCTCTTGTGTTTTGAGGTTTTTGATC-  1049
         | |||||||||||||||||| ||  || |||||||||  ||||||| 
seq2  --ACTAATGAGCCATCTTGTCAG-CTTCTGGGTTTTGAGG--TTTGATCT  1031

seq1  TTTTATAC  1057
      ||||||||
seq2  TTTTATAC  1039