BAC Information

Click to search

BAC

Clone NameB6Ng01-088A19
Chromosome2 (Build37)
Map Location 50,149,497 - 50,150,534
singlet/doubletsinglet
Overlap gene2010311D03Rik
Upstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik, Lypd6
Downstream geneLOC666781, LOC227885, Rnd3, LOC666802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088A19.bB6Ng01-088A19.g
ACCDH901012DH901013
length1,155951
definitionDH901012|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A19, 5' end.DH901013|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagacctgtacttcattttaaaattgtttaaagattat
cagattattagataatctaattatcagattatttagtttgttgatgtcta
gtttcttgaattttttatatatttcgaatattacctctctgacagaagtg
gagttggtaaaacatcttttcccattctgtaggctgccattttgccctat
tgatgatggtttttgccttacagaagcttttttgttttcatgaggtcctg
tttattaattgttcatcttagtgcttgtgtaattgacattctgttcaaaa
agttatctcctgtgccaacacactcaaggctattccccactctctcttct
attagattcagtattttgggttttatgttgaggccttgatccacttagac
ttgagttttgtgcatggtgataaatatggatcaatttgcattcttctaca
tgcagacatccagttagtcttgcaccatttgttgaagatactttcctttt
tccattgcatatttatgaattattttttttaaaaatcaggtgtctttagg
tgtgtcaatttacatctgaatcttcggtttaatttcattgatcaaactgt
cagtttttgtgccagtgccatgtaatttttatcactatatccctgtttta
tggcttgaaatcagggatggccctacctcctgaagttcttttattgttca
ggattgttttagctatcctgttttttgttttttgtttgtttgttttcctg
tgcagctgagtattatcattttcaagatacataaatattgtgttggaatt
ttgatggggattgtgttgaaacttaagattgcttttggaaaggtggccat
ttttatcatgttgagtctatggatccatgtgcatggaagttctttccatc
ttctgatatcttcttcagtttccttcttcaaagacttgaagttattatca
tgtaggtctttcactttcttggtaccctaagatttttttattatttgtgg
attattgtgaggtgttctcctgatttctttctcagcccgtttggtcattt
gtaagtgtcttgtttgagtttttattgtctatgaagagacaccatgactt
caactatcttaaaggtaaatttaattggggggacactggccttacagttt
agaag
gaattcttatccacctgccctgaagggacgtaataggaagaggcctctga
tactctctagaaggagggaagttgggtgaaatagaatagaatgctgatat
ctgtactttgttttaaatgaagacagtaggatgaatttatcaaacgatag
caattctttgttagaatgacgtttatactgagtttaaatgttgccattta
gatgtgcatacataagggttttgtgttgtcttatatgtgttgtaaattct
ggacagatagtagtggaatatgcatatacatatgtctttaataatatcat
gagtttttaaaaaagtccttatttagcatctagacaaactgaacttgcca
cccttctggatatacctatttcagactttagcctctatttcttgaaactt
aaaaacttttaataaaatgtcccaagttgcatgattctcggtgaaggtac
aagtctgctttcctgtaaagtcagaagatactgcagctgagttagtgtgc
tcagatggttttagttatctacaaatggctgtcactgaagaccccttttt
ttcatgtgaaagacacatttctgtgtgcctaagcattgaaacatgggcat
tcataactgtgtggtaactcagtccaaataacccaggccaggtgatgtca
gtatttttttggatgtaagtggccagctggcaaataagctaagcagatag
gctaatgccgatgtggtggtgtgagaagtgagtgactatgcctgtgttat
ggagaaacatcagttcccatcagctgtattgagaaatcatctgacaactt
gtacgttaaatattctgacctaagtattgtgctagaacctgtccatgcat
agttacatcatacatgtaagatcagaaagtgcaatacaaagatatgccaa
aattgaggaaagtaagcattgccaccaaactaagaggaaataatagcttg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50149497_50150534
seq2: B6Ng01-088A19.g_67_1102 (reverse)

seq1  AACCAGAGAGTTGAGAATTTATCCTTGGACCTAAATGTTTCCTTTTTGAT  50
      |||||||||| ||   |||||||| ||||||||||||||||| |||||||
seq2  AACCAGAGAGGTGGAGATTTATCC-TGGACCTAAATGTTTCC-TTTTGAT  48

seq1  CCTTTCCTTTCCTGCTGC-AGACTGTGATAATCAACCCCCAAGCTATTAT  99
       ||||||||||||||||| ||                 ||||||||||||
seq2  -CTTTCCTTTCCTGCTGCAAGNNNNNNNNNNNNNNNNNCCAAGCTATTAT  97

seq1  TTCCTCTTAGTTTGGTGGCAATGCTTACTTTCCTCAATTTTGGCATATCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTAGTTTGGTGGCAATGCTTACTTTCCTCAATTTTGGCATATCT  147

seq1  TTGTATTGCACTTTCTGATCTTACATGTATGATGTAACTATGCATGGACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGCACTTTCTGATCTTACATGTATGATGTAACTATGCATGGACA  197

seq1  GGTTCTAGCACAATACTTAGGTCAGAATATTTAACGTACAAGTTGTCAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGCACAATACTTAGGTCAGAATATTTAACGTACAAGTTGTCAGA  247

seq1  TGATTTCTCAATACAGCTGATGGGAACTGATGTTTCTCCATAACACAGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTCAATACAGCTGATGGGAACTGATGTTTCTCCATAACACAGGC  297

seq1  ATAGTCACTCACTTCTCACACCACCACATCGGCATTAGCCTATCTGCTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACTCACTTCTCACACCACCACATCGGCATTAGCCTATCTGCTTA  347

seq1  GCTTATTTGCCAGCTGGCCACTTACATCCAAAAAAATACTGACATCACCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTGCCAGCTGGCCACTTACATCCAAAAAAATACTGACATCACCT  397

seq1  GGCCTGGGTTATTTGGACTGAGTTACCACACAGTTATGAATGCCCATGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGTTATTTGGACTGAGTTACCACACAGTTATGAATGCCCATGTT  447

seq1  TCAATGCTTAGGCACACAGAAATGTGTCTTTCACATGAAAAAAAGGGGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTTAGGCACACAGAAATGTGTCTTTCACATGAAAAAAAGGGGTC  497

seq1  TTCAGTGACAGCCATTTGTAGATAACTAAAACCATCTGAGCACACTAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGACAGCCATTTGTAGATAACTAAAACCATCTGAGCACACTAACT  547

seq1  CAGCTGCAGTATCTTCTGACTTTACAGGAAAGCAGACTTGTACCTTCACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGTATCTTCTGACTTTACAGGAAAGCAGACTTGTACCTTCACC  597

seq1  GAGAATCATGCAACTTGGGACATTTTATTAAAAGTTTTTAAGTTTCAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCATGCAACTTGGGACATTTTATTAAAAGTTTTTAAGTTTCAAGA  647

seq1  AATAGAGGCTAAAGTCTGAAATAGGTATATCCAGAAGGGTGGCAAGTTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGGCTAAAGTCTGAAATAGGTATATCCAGAAGGGTGGCAAGTTCA  697

seq1  GTTTGTCTAGATGCTAAATAAGGACTTTTTTAAAAACTCATGATATTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTAGATGCTAAATAAGGACTTTTTTAAAAACTCATGATATTATT  747

seq1  AAAGACATATGTATATGCATATTCCACTACTATCTGTCCAGAATTTACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATATGTATATGCATATTCCACTACTATCTGTCCAGAATTTACAA  797

seq1  CACATATAAGACAACACAAAACCCTTATGTATGCACATCTAAATGGCAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATAAGACAACACAAAACCCTTATGTATGCACATCTAAATGGCAAC  847

seq1  ATTTAAACTCAGTATAAACGTCATTCTAACAAAGAATTGCTATCGTTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACTCAGTATAAACGTCATTCTAACAAAGAATTGCTATCGTTTGA  897

seq1  TAAATTCATCCTACTGTCTTCATTTAAAACAAAGTACAGATATCAGCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCATCCTACTGTCTTCATTTAAAACAAAGTACAGATATCAGCATT  947

seq1  CTATTCTATTTCACCCAACTTCCCTCCTTCTAGAGAGTATCAGAGGCCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTATTTCACCCAACTTCCCTCCTTCTAGAGAGTATCAGAGGCCTC  997

seq1  TTCCTATTACGTCCCTTCAGGGCAGGTGGATAAGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTACGTCCCTTCAGGGCAGGTGGATAAGAATTC  1036