BAC Information

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BAC

Clone NameB6Ng01-088C22
Chromosome2 (Build37)
Map Location 174,929,456 - 175,051,655
singlet/doubletdoublet
Overlap geneLOC100043761, LOC620790, LOC665001
Upstream geneNpepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3, LOC545487, LOC100043760
Downstream geneLOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126, LOC100039017, LOC100039036, LOC100039049, LOC626832, OTTMUSG00000016203, LOC100039060
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088C22.bB6Ng01-088C22.g
ACCDH901108DH901109
length1,163391
definitionDH901108|Mus musculus domesticus DNA, BAC clone: B6Ng01-088C22, 5' end.DH901109|Mus musculus domesticus DNA, BAC clone: B6Ng01-088C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,929,456 - 174,930,097)(175,051,259 - 175,051,655)
sequence
gaattcctaaacctgataaacagcttcagtgaactagctgcgtataaaat
taactcaaacaaatcattggcctttctctacacaaaggataaacagactg
agaaagaaattagggaaagagtacccttcacaatagtcacaaaaaatata
aaataccttggtgtgacactaaggaagtgaaagatctgtatgataagaac
ctcaagtctctgaagaaagaaatcaaagaaaatttccgaagatggaacga
tctctgatgcacatgggttggcaggatcaatatagtgaaattagctatct
tgccaaaagcaatctacagatccaatgcaatccccatcaaaattccaact
caattcttcatcgaattcgaaagggcaatttgcaaattcatctgtattaa
caaaagacctaggataggaaaaattcttctcaatgataaaagaatctctg
gtggaatcaccatgcctgacctaaagctgtactacagagtaattgtgatg
aaaactgcatggtactggaatagcgacagtcaagtagaccaatggaatag
aattgaagattcagaaatgaacccacacacctatagtaacttgatctttg
acaagggagctaaaaccattcagtggaaaagagacagcattttcatcaaa
tggtgttggcacaattggcagttatcatgtagaagagcgcgaattgattc
attctcatctccttgttctaaggtcaaacctaagtggaccaaggaactcc
acataaaacgagagacactgaaacttatctaggagaaagtggggaaaagc
cttgaagatatggagaaaagttcctgaatagaacagccatggcttgtgct
gtaaaggttgagaattggcaaatgggacctcataaaattgcaaagcttct
gtaaggcaaaagacactgtcataagacaaaaaggccaacaacagattgga
aaagaatctttaccaatcctaaatcagataggggactaatatccaatata
tataaagactcaagaatgtagactttgggttacattcataggtttctcct
cctgtatttcttcgtttttgtatcggagaatgactgcttatacaaaggct
taccacatgtacagtatagtcttttctccccatatgtgttcttcatgctt
tgtctagactatg
cagtcctgacttccttggagatgtagagcagtatgtaatcataagcccaa
taaaccttttcctccaaaacttgcttcttggtcatgatgtttgtgcagga
atagaaaccctgaataagacaatgggtataaggagtggattgtaaaaata
ggttagacaataaagaaataaagaatccaaggaactaaagggaactgcaa
ccctataggtgcaacaacaatatgaactaaccagtaccccggagctcttg
tctctagctgcatatgtatcaaaagatggcctaataggccatcacttgaa
agagaggcccattggacttgcaaactttatatgccacagtacaggggaat
gccagggccaaaaagggggagtgggtgggtaggagagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_174929456_174930097
seq2: B6Ng01-088C22.b_576_1208

seq1  CAAGTAGACCAATGGAATAGAATTGAAGATTCAGAAATGAACCCACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGACCAATGGAATAGAATTGAAGATTCAGAAATGAACCCACACAC  50

seq1  CTATAGTAACTTGATCTTTGACAAGGGAGCTAAAACCATTCAGTGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTAACTTGATCTTTGACAAGGGAGCTAAAACCATTCAGTGGAAAA  100

seq1  GAGACAGCATTTTCATCAAATGGTGTTGGCACAATTGGCAGTTATCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCATTTTCATCAAATGGTGTTGGCACAATTGGCAGTTATCATGT  150

seq1  AGAAGAGCGCGAATTGATTCATTCTCATCTCCTTGTTCTAAGGTCAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCGCGAATTGATTCATTCTCATCTCCTTGTTCTAAGGTCAAACC  200

seq1  TAAGTGGACCAAGGAACTCCACATAAAACGAGAGACACTGAAACTTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGACCAAGGAACTCCACATAAAACGAGAGACACTGAAACTTATCT  250

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGAGAAAAGTTCCTGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGAGAAAAGTTCCTGAATA  300

seq1  GAACAGCCATGGCTTGTGCTGT-AAGGTTGAGAATTGGCAAATGGGACCT  349
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAACAGCCATGGCTTGTGCTGTAAAGGTTGAGAATTGGCAAATGGGACCT  350

seq1  CATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAA  399
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTC-ATAAGACAA  399

seq1  AAAGGCCAACAACAGATTGGAAAAGAATCTTTACCAATCCTAAATCAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAACAACAGATTGGAAAAGAATCTTTACCAATCCTAAATCAGAT  449

seq1  AGGGGACTAATATCCAATATATATAAAGAACTCAAGAATGTAGACTTT-G  498
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  AGGGGACTAATATCCAATATATATAAAG-ACTCAAGAATGTAGACTTTGG  498

seq1  GTTACATTCATAGGGTTTCT-CTCCTGTATTTCTTCGTTTATGTATTCGG  547
      |||||||||||| ||||||| ||||||||||||||||||| |||| ||||
seq2  GTTACATTCATA-GGTTTCTCCTCCTGTATTTCTTCGTTTTTGTA-TCGG  546

seq1  AG-ATGACTGCTTATTACAAAGGCTTTACCACATTGGTTACAGTAATAGT  596
      || ||||||||||| ||||||||| |||||||||    |||||| |||||
seq2  AGAATGACTGCTTA-TACAAAGGC-TTACCACAT---GTACAGT-ATAGT  590

seq1  C-TTTCTCCCCATTATGTGTTCTTTCATGCCTTTGTCTAAGACTATG  642
      | |||||||||| ||||||||| |||||| |||||||| ||||||||
seq2  CTTTTCTCCCCA-TATGTGTTC-TTCATG-CTTTGTCT-AGACTATG  633

seq1: chr2_175051259_175051655
seq2: B6Ng01-088C22.g_65_461 (reverse)

seq1  CCCACTCTCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCCTG  50

seq1  TACTGTGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCAAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCAAGTGA  100

seq1  TGGCCTATTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTATTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTC  150

seq1  CGGGGTACTGGTTAGTTCATATTGTTGTTGCACCTATAGGGTTGCAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTACTGGTTAGTTCATATTGTTGTTGCACCTATAGGGTTGCAGTTC  200

seq1  CCTTTAGTTCCTTGGATTCTTTATTTCTTTATTGTCTAACCTATTTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTTCCTTGGATTCTTTATTTCTTTATTGTCTAACCTATTTTTAC  250

seq1  AATCCACTCCTTATACCCATTGTCTTATTCAGGGTTTCTATTCCTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTCCTTATACCCATTGTCTTATTCAGGGTTTCTATTCCTGCACA  300

seq1  AACATCATGACCAAGAAGCAAGTTTTGGAGGAAAAGGTTTATTGGGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATGACCAAGAAGCAAGTTTTGGAGGAAAAGGTTTATTGGGCTTA  350

seq1  TGATTACATACTGCTCTACATCTCCAAGGAAGTCAGGACTGGAATTC  397
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACATACTGCTCTACATCTCCAAGGAAGTCAGGACTGGAATTC  397