BAC Information

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BAC

Clone NameB6Ng01-088D13
Chromosome2 (Build37)
Map Location 152,709,716 - 152,882,266
singlet/doubletdoublet
Overlap geneTpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7
Upstream geneAngpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1
Downstream geneBC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088D13.bB6Ng01-088D13.g
ACCDH901138DH901139
length1,0691,225
definitionDH901138|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D13, 5' end.DH901139|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,709,716 - 152,710,805)(152,881,013 - 152,882,266)
sequence
gaattcacctacatactatccttcaataaggatgataagaggaagggagg
gaacatctgtcaggttgagtgctatcaactgagttgagcatagaaaaaca
ggttgtctgctttgtcggtttctagttgggttagcacttaaaggtgacct
ggatggtggggaactaagcaagcgtttgtggttttgttttacaggcttgt
taccctccaaatctgtgaacaagattgcacgagacccccagacccccata
ctgcagaccaaatatcgtacaagggctgtgacttgcaaaagtactgcaga
gcaggaggccgaggagcttgagaaactgcaacagtaggtcccactggcag
tgtctgagaaaggctggccactcctgcctgcctgctttcagtcctgttgg
gcggtggtaactgttttccctttcatgaaaatgcaagccatttagtggct
gcgtaggctgtgctcctgtctctgtgactgaaaatgggactatgtaggtg
ccctggagcagaatctgatgagtcatctgaaaggatgactttgctttggt
tttttgtttgcttgcttttaaattctatttgtggaagttttgcttgcatg
caccactggcatgcctgtgctcatggaaggcagaagaggactttggagcc
tctagaaatggagttacagatacgtggttgttcgctatcatgtgggtgtg
ctggggatttttggggagtagcagccagtgctttataaacccctgagcca
tctttccaggcccccaaagtttgggaacttgaatttctggtcctcctgtc
tctgccacagtgcgaggattataggcgcatgcactcatagagcctggagc
cccggggggaccccaggccatgccgttcacccttttctcaggagtgaaga
tgactatggagaggagagatcatgctgtcatggtgatcatcttagcgctt
ctactttgtctacgttgtgtacttttattatttaaagcttttatgtttat
acttttggtttgttacagatacaaattcaagcacgggacttgatctaaat
ttggaagtggccatcttgc
gaattctcacggtctgccatacttccagctctatctgcacttgtccctaa
agtcccaggccgtcccctttcagtgagctcatctcacttggcatgagaga
gagtgatgagtgactctaggatctgcctagaactccatcttctatttcac
aaaacttcctagctccccagtcttgtcatcttgcatctcagttaagactg
gctgctgtcccaggccagggacatgggctaggatgagtggtcttttgtgc
aacctaggatgtctggactatgggaaatagttcataggcctggggccttg
gcagatttgaggcaaaaccaaattttgtctcccaggtattgccccagaga
acctcactgcagggtggcaggaagccaaaatttatgtcacgtccccagag
ctatttttttttttccagctgagagccacttggcagcagaaatgtctcaa
gggtcctgaggacaatttccttttagagaagatagggctggggacgtaga
aggagatctagactggagcacccattctagaacatcccaggtgacccacg
ctacccctccccaaccacccacagcagaagctagactcttccacatcaga
gcatcagggctccaggtccttggtccttataaaagaccagcagctccata
agacatgctatcaagaggtattctagaatctagatgtctcccaacaggtc
ctctcagtgcgagagtgaggctacagggcctcatctatagttgagtggga
cagaatctccctggacattttatctgctgtgcttaagaccttcctctaga
gggcgcgacccatctgcacatctagaacaaatggcaccttgtgatctttc
acctgaggggtctagacttcatccataatagagctcctcccaagtgcacc
tcccaagcagaggcaccccacccttcatattgctgtcagccctcactctc
aaggttctctatcctcccacacctgcgctgtcagaccccaagtccctccc
ccactctctgctctatcctcctccgtcagtttcccttctacaggaactgg
gcaaccttgttcagagattcccccaactcatctacccaccacagctctct
catctttctcaaagaaaatccctccacccaatggcagcccttccctcaac
tccttgaaggtaacttgggccgggcagcttctttgtagtccacaggagta
gtggggtaaatcagccagggatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152709716_152710805
seq2: B6Ng01-088D13.b_50_1118

seq1  GAATTCACCTACATACTATCCTTCAATAAGGATGATAAGAGGAAGGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTACATACTATCCTTCAATAAGGATGATAAGAGGAAGGGAGG  50

seq1  GAACATCTGTCAGGTTGAGTGCTATCAACTGAGTTGAGCATAGAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTGTCAGGTTGAGTGCTATCAACTGAGTTGAGCATAGAAAAACA  100

seq1  GGTTGTCTGCTTTGTCGGTTTCTAGTTGGGTTAGCACTTAAAGGTGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCTGCTTTGTCGGTTTCTAGTTGGGTTAGCACTTAAAGGTGACCT  150

seq1  GGATGGTGGGGAACTAAGCAAGCGTTTGTGGTTTTGTTTTACAGGCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTGGGGAACTAAGCAAGCGTTTGTGGTTTTGTTTTACAGGCTTGT  200

seq1  TACCCTCCAAATCTGTGAACAAGATTGCACGAGACCCCCAGACCCCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCAAATCTGTGAACAAGATTGCACGAGACCCCCAGACCCCCATA  250

seq1  CTGCAGACCAAATATCGTACAAGGGCTGTGACTTGCAAAAGTACTGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGACCAAATATCGTACAAGGGCTGTGACTTGCAAAAGTACTGCAGA  300

seq1  GCAGGAGGCCGAGGAGCTTGAGAAACTGCAACAGTAGGTCCCACTGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGCCGAGGAGCTTGAGAAACTGCAACAGTAGGTCCCACTGGCAG  350

seq1  TGTCTGAGAAAGGCTGGCCACTCCTGCCTGCCTGCTTTCAGTCCTGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGAAAGGCTGGCCACTCCTGCCTGCCTGCTTTCAGTCCTGTTGG  400

seq1  GCGGTGGTAACTGTTTTCCCTTTCATGAAAATGCAAGCCATTTAGTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGGTAACTGTTTTCCCTTTCATGAAAATGCAAGCCATTTAGTGGCT  450

seq1  GCGTAGGCTGTGCTCCTGTCTCTGTGACTGAAAATGGGACTATGTAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGGCTGTGCTCCTGTCTCTGTGACTGAAAATGGGACTATGTAGGTG  500

seq1  CCCTGGAGCAGAATCTGATGAGTCATCTGAAAGGATGACTTTGCTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGCAGAATCTGATGAGTCATCTGAAAGGATGACTTTGCTTTGGT  550

seq1  TTTTTGTTTGCTTGCTTTTAAATTCTATTTGTGGAAGTTTTGCTTGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGCTTGCTTTTAAATTCTATTTGTGGAAGTTTTGCTTGCATG  600

seq1  CACCACTGGCATGCCTGTGCTCATGGAAGGCAGAAGAGGACTTTGGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGGCATGCCTGTGCTCATGGAAGGCAGAAGAGGACTTTGGAGCC  650

seq1  TCTAGAAATGGAGTTACAGATACGTGGTTGTTCGCTATCATGTGGGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAATGGAGTTACAGATACGTGGTTGTTCGCTATCATGTGGGTGTG  700

seq1  CTGGGGATTTTTGGGGAGTAGCAGCCAGTGCTTTATAAACCCCTGAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATTTTTGGGGAGTAGCAGCCAGTGCTTTATAAACCCCTGAGCCA  750

seq1  TCTTTCCAGGCCCCCAAAGTTTGGGAACTTGAATTTCTGGTCCTCCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGGCCCCCAAAGTTTGGGAACTTGAATTTCTGGTCCTCCTGTC  800

seq1  TCTGCCACAGTGCGAGGATTATAGGCGCATGCACTCATAGAGCCTGGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACAGTGCGAGGATTATAGGCGCATGCACTCATAGAGCCTGGAGC  850

seq1  CCCGGGGGGACCCCAGGCCATGCCGTTCACCCTTTTCTCAGGAGGTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCGGGGGGACCCCAGGCCATGCCGTTCACCCTTTTCTCAGGA-GTGAAG  899

seq1  ATGACTATGGAGAGGAGAGATCATGCTGTCCATGGTGGATCATCTTAGCG  950
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  ATGACTATGGAGAGGAGAGATCATGCTGT-CATGGT-GATCATCTTAGCG  947

seq1  CTTCTACTTTGTTCTACGTTGTGTACTTTTTATTTAATTTAAAAAGCCTT  1000
      ||||||||||| |||||||||||||| |||||||  |||||||    |||
seq2  CTTCTACTTTG-TCTACGTTGTGTAC-TTTTATT--ATTTAAA---GCTT  990

seq1  TTATGTTTATTACTTTTTGTGTTTGTTACAGATACAAATTCAAAGCACGG  1050
      ||||||||| |||||||   ||||||||||||||||||||| ||||||||
seq2  TTATGTTTA-TACTTTT--GGTTTGTTACAGATACAAATTC-AAGCACGG  1036

seq1  GAACTTGATCCTAGAATTTTTGAAAGTGGCCCCATCTTGC  1090
      | ||||||| ||| |   |||| ||||||  |||||||||
seq2  G-ACTTGAT-CTAAA---TTTGGAAGTGG--CCATCTTGC  1069

seq1: chr2_152881013_152882266
seq2: B6Ng01-088D13.g_67_1291 (reverse)

seq1  ACTATCCCTGGCCTAGATTCATCCCACATCATCCCTGGTGGGCCTACAAG  50
      ||||||||||||   |||| | ||||| |  |||   ||||    || | 
seq2  ACTATCCCTGGC--TGATTTACCCCAC-TACTCC--TGTGG----ACTAC  41

seq1  AAAGAAGGCACTGCCCGGGGCCCAAGTACCCCTCAGGGAGTGTGGGGGAA  100
      |||||||   ||||||  |||||||||  || ||| ||||| || |||||
seq2  AAAGAAG---CTGCCC--GGCCCAAGTTACCTTCAAGGAGT-TGAGGGAA  85

seq1  GGGCTGCCATGTGGTGGGAGGGGATCTCTTTGAGAAAGATGGAGAAAGCT  150
      |||||||||| |||  ||||||  | |||||||||||||| |||| ||||
seq2  GGGCTGCCAT-TGGGTGGAGGGATTTTCTTTGAGAAAGAT-GAGAGAGCT  133

seq1  GTGGTGGGTGTAGAATGAGTTGGGGGAATCTCTGGACAGGGTTGGCACAG  200
      |||||||  |||| |||||||||||||||||||| ||| |||| || |||
seq2  GTGGTGG--GTAG-ATGAGTTGGGGGAATCTCTGAACAAGGTT-GCCCAG  179

seq1  TTCCTGTAGGAAGGGAAACTGGACGGGAGGAGGATTAGAGCAGAGAGTGG  250
      |||||||| ||||||||||| ||| ||||||||| |||||||||||||||
seq2  TTCCTGTA-GAAGGGAAACT-GAC-GGAGGAGGA-TAGAGCAGAGAGTGG  225

seq1  GGGAGGGGACTTGGGGGTCTGACAGCGCAGGTGTTGGGAGGATAGAGAAC  300
      |||| ||||||| |||||||||||||||||||| ||||||||||||||||
seq2  GGGA-GGGACTT-GGGGTCTGACAGCGCAGGTG-TGGGAGGATAGAGAAC  272

seq1  CCTGAGGAGTGAGGGCTGACAGCAATATGAAGGGTGGGGTGCCTCTGCTT  350
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGA-GAGTGAGGGCTGACAGCAATATGAAGGGTGGGGTGCCTCTGCTT  321

seq1  GGGAGGTGCACTTGGGAGGAGCTCTATTATGGATGAAGTCTAGACCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGCACTTGGGAGGAGCTCTATTATGGATGAAGTCTAGACCCCTC  371

seq1  AGGTGAAAGGTCACAAGGTGCCATTTGTTCTAGATGTGCAGATGGGTCGC  450
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAGATCACAAGGTGCCATTTGTTCTAGATGTGCAGATGGGTCGC  421

seq1  GCCCTCTAGAGGAAGGTCTTAAGCACAGCAGATAAAATGTCCAGGGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTAGAGGAAGGTCTTAAGCACAGCAGATAAAATGTCCAGGGAGAT  471

seq1  TCTGTCCCACTCAACTATAGATGAGGCCCTGTAGCCTCACTCTCGCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCACTCAACTATAGATGAGGCCCTGTAGCCTCACTCTCGCACTG  521

seq1  AGAGGACCTGTTGGGAGACATCTAGATTCTAGAATACCTCTTGATAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCTGTTGGGAGACATCTAGATTCTAGAATACCTCTTGATAGCAT  571

seq1  GTCTTATGGAGCTGCTGGTCTTTTATAAGGACCAAGGACCTGGAGCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGGAGCTGCTGGTCTTTTATAAGGACCAAGGACCTGGAGCCCTG  621

seq1  ATGCTCTGATGTGGAAGAGTCTAGCTTCTGCTGTGGGTGGTTGGGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGATGTGGAAGAGTCTAGCTTCTGCTGTGGGTGGTTGGGGAGGG  671

seq1  GTAGCGTGGGTCACCTGGGATGTTCTAGAATGGGTGCTCCAGTCTAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCGTGGGTCACCTGGGATGTTCTAGAATGGGTGCTCCAGTCTAGATC  721

seq1  TCCTTCTACGTCCCCAGCCCTATCTTCTCTAAAAGGAAATTGTCCTCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTACGTCCCCAGCCCTATCTTCTCTAAAAGGAAATTGTCCTCAGG  771

seq1  ACCCTTGAGACATTTCTGCTGCCAAGTGGCTCTCAGCTGGAAAAAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGAGACATTTCTGCTGCCAAGTGGCTCTCAGCTGGAAAAAAAAAA  821

seq1  ATAGCTCTGGGGACGTGACATAAATTTTGGCTTCCTGCCACCCTGCAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTGGGGACGTGACATAAATTTTGGCTTCCTGCCACCCTGCAGTG  871

seq1  AGGTTCTCTGGGGCAATACCTGGGAGACAAAATTTGGTTTTGCCTCAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTCTGGGGCAATACCTGGGAGACAAAATTTGGTTTTGCCTCAAAT  921

seq1  CTGCCAAGGCCCCAGGCCTATGAACTATTTCCCATAGTCCAGACATCCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGGCCCCAGGCCTATGAACTATTTCCCATAGTCCAGACATCCTA  971

seq1  GGTTGCACAAAAGACCACTCATCCTAGCCCATGTCCCTGGCCTGGGACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCACAAAAGACCACTCATCCTAGCCCATGTCCCTGGCCTGGGACAG  1021

seq1  CAGCCAGTCTTAACTGAGATGCAAGATGACAAGACTGGGGAGCTAGGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTCTTAACTGAGATGCAAGATGACAAGACTGGGGAGCTAGGAAG  1071

seq1  TTTTGTGAAATAGAAGATGGAGTTCTAGGCAGATCCTAGAGTCACTCATC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGAAATAGAAGATGGAGTTCTAGGCAGATCCTAGAGTCACTCATC  1121

seq1  ACTCTCTCTCATGCCAAGTGAGATGAGCTCACTGAAAGGGGACGGCCTGG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTCATGCCAAGTGAGATGAGCTCACTGAAAGGGGACGGCCTGG  1171

seq1  GACTTTAGGGACAAGTGCAGATAGAGCTGGAAGTATGGCAGACCGTGAGA  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAGGGACAAGTGCAGATAGAGCTGGAAGTATGGCAGACCGTGAGA  1221

seq1  ATTC  1254
      ||||
seq2  ATTC  1225