BAC Information

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BAC

Clone NameB6Ng01-088F05
Chromosome2 (Build37)
Map Location 129,769,731 - 129,770,916
singlet/doubletsinglet
Overlap genenone
Upstream geneZc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35
Downstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088F05.bB6Ng01-088F05.g
ACCDH901208DH901209
length1,1981,176
definitionDH901208|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F05, 5' end.DH901209|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttatggagtccaccttcttgagttctttatatatattggatattagtccc
ctgttcgatttgggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcaatttta
tgaggtcccatttatcaattctcgatcttacagcacaagccattgctgtt
ctattgaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagtaagggatcaattcgc
aatattctacatgataacagccagttgtgccagcaccatttgttgaaaat
gctgtctttttttccactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatctctgggtcttcaattctgttccattg
gtctacttgtctgtcactataccagtaccatgcagtttttatcacaattg
ctctgtagtacagctttaggtcgggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggttttttgttattccagat
gaatctgccgattgccctttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttactatattgatcctgccaatccatgagcatgggagatctttccatct
tttgagatcttctttaatttctttcttcagagacatgaagttcttgtcat
acagatctttcacttccttagttagagtcacgcctaggtattttatatta
tttgtggctatcgagaaggtgttgtttcccttaattctttctcagctgtt
gtcttttgtgtagagaaggccattgactggtttgagtatttatttcagct
actcactgaagctgttatcagcttaggagtctctggtgattaaggtcact
atatacttcatatcatctgcaaagggaattgacctctcctcaattgatcc
tggatctcttgttgtccaattgcgctggcagtgattcatagtaccatg
gaattctaaagaaggaatgtgatgttaagaatgtgtaggggaaggctcct
ttgattaagatgtacccattataaagatggaagatgtaccaccagcaatt
ctgatgttctagaggctcactcactgcctgagcctgtaactgtccttggc
gaattgagggtgtaatggtggggtgccttcatctagggagtctgatatgg
gcttagagacacacacacaggcttgccatttcctttataggggctgtaag
aaagaggctgcagtgagtgggtgtgatctgaacaacattccctgtgtagc
ccaggttggctccaaatggctatattcttcttacctctgcctcgtggtta
ctgagagtacagatatgagccaccccagaatctggcctagggtttttcag
tttaacttaagggctttccatgaaatggagaaccttcccggcctgtgact
ctccagcagtaagcttggcctctcatactacatggtggtcccaacacaac
ttacaaattccttataaatgtaggcagctatgtctgcatttttgcagatg
ttctttccttctggggccagagacaaaaacaggaaaactgtaaggacatg
ggggacaaaggggtgaaggtgttcactccagagtctggctgaaacctctt
gccagctgaaaatcaaggattctgacagaattaacatttgctgtgttgga
tgctaaaataggaacaatataggcctgacaagatggccaccatacttaaa
aggcctgagtttgatctccagaagccacaagatggaaagagagaacaaac
tcctacaagttatatcctctgtcacatgtgcccccccccacatacaaata
gatagataatagatcataggtatagatagaggatagatagatgatataga
tataactttaaaagaataataataaatcaggcacaagatctcatgtgggg
tctctctctctcacatattttctcacaagcaagactattaattctgttta
cattgagtacccaaacttccttcatccgtgttatttaagacgtaccttat
tcagtgtaatcgtgtcagatatgcctcagacacacctctaatcatctcat
ttaaatgccttaatcagcattggaatcccaaacctttgtatgacctctgg
aaagacaatagttaaactcttctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129769731_129770916
seq2: B6Ng01-088F05.g_69_1244

seq1  GAATTCTAAAGAAGGAATGTGATGTTAAGAATGTGTAGGGGAAGGCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGAAGGAATGTGATGTTAAGAATGTGTAGGGGAAGGCTCCT  50

seq1  TTGATTAAGATGTACCCATTATAAAGATGGAAGATGTACCACCAGCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAAGATGTACCCATTATAAAGATGGAAGATGTACCACCAGCAATT  100

seq1  CTGATGTTCTAGAGGCTCACTCACTGCCTGAGCCTGTAACTGTCCTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTCTAGAGGCTCACTCACTGCCTGAGCCTGTAACTGTCCTTGGC  150

seq1  GAATTGAGGGTGTAATGGTGGGGTGCCTTCATCTAGGGAGTCTGATATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAGGGTGTAATGGTGGGGTGCCTTCATCTAGGGAGTCTGATATGG  200

seq1  GCTTAGAGACACACACACAGGCTTGCCATTTCCTTTATAGGGGCTGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAGACACACACACAGGCTTGCCATTTCCTTTATAGGGGCTGTAAG  250

seq1  AAAGAGGCTGCAGTGAGTGGGTGTGATCTGAACAACATTCCCTGTGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCTGCAGTGAGTGGGTGTGATCTGAACAACATTCCCTGTGTAGC  300

seq1  CCAGGTTGGCTCCAAATGGCTATATTCTTCTTACCTCTGCCTCGTGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGGCTCCAAATGGCTATATTCTTCTTACCTCTGCCTCGTGGTTA  350

seq1  CTGAGAGTACAGATATGAGCCACCCCAGAATCTGGCCTAGGGTTTTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTACAGATATGAGCCACCCCAGAATCTGGCCTAGGGTTTTTCAG  400

seq1  TTTAACTTAAGGGCTTTCCATGAAATGGAGAACCTTCCCGGCCTGTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTAAGGGCTTTCCATGAAATGGAGAACCTTCCCGGCCTGTGACT  450

seq1  CTCCAGCAGTAAGCTTGGCCTCTCATACTACATGGTGGTCCCAACACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCAGTAAGCTTGGCCTCTCATACTACATGGTGGTCCCAACACAAC  500

seq1  TTACAAATTCCTTATAAATGTAGGCAGCTATGTCTGCATTTTTGCAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATTCCTTATAAATGTAGGCAGCTATGTCTGCATTTTTGCAGATG  550

seq1  TTCTTTCCTTCTGGGGCCAGAGACAAAAACAGGAAAACTGTAAGGACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTTCTGGGGCCAGAGACAAAAACAGGAAAACTGTAAGGACATG  600

seq1  GGGGACAAAGGGGTGAAGGTGTTCACTCCAGAGTCTGGCTGAAACCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAAGGGGTGAAGGTGTTCACTCCAGAGTCTGGCTGAAACCTCTT  650

seq1  GCCAGCTGAAAATCAAGGATTCTGACAGAATTAACATTTGCTGTGTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGAAAATCAAGGATTCTGACAGAATTAACATTTGCTGTGTTGGA  700

seq1  TGCTAAAATAGGAACAATATAGGCCTGACAAGATGGCCACCATACTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATAGGAACAATATAGGCCTGACAAGATGGCCACCATACTTAAA  750

seq1  AGGCCTGAGTTTGATCTCCAGAAGCCACAAGATGGAAAGAGAGAACAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGAGTTTGATCTCCAGAAGCCACAAGATGGAAAGAGAGAACAAAC  800

seq1  TCCTACAAGTTATATCCTCTGTCACATGTGCCCCCCCCCACATACAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAAGTTATATCCTCTGTCACATGTGCCCCCCCCCACATACAAATA  850

seq1  GATAGATAATAGATCATAGGTATAGATAGAGGATAGATAGATGAAATAGA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATAGATAATAGATCATAGGTATAGATAGAGGATAGATAGATGATATAGA  900

seq1  TATAACTTTAAAAGAATAACAATAAATCAGGCACAAGATCTCATGTGGGG  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATAACTTTAAAAGAATAATAATAAATCAGGCACAAGATCTCATGTGGGG  950

seq1  CCTCTCTCCTCTCCACATATTTTCTCACAAGCAAGACTATTAATTCTGTT  1000
       |||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  TCTCTCT-CTCT-CACATATTTTCTCACAAGCAAGACTATTAATTCTGTT  998

seq1  TACATTGAAGGTACCCAAACTTCCTTCATCCGTGTTATCTAAAGACGTAC  1050
      ||||||||  |||||||||||||||||||||||||||| | |||||||||
seq2  TACATTGA--GTACCCAAACTTCCTTCATCCGTGTTAT-TTAAGACGTAC  1045

seq1  CTTA-TCAGTTGTAATCGTGTCAGATATGCCTCAGAACACA-CTCT-ATC  1097
      |||| |||| ||||||||||||||||||||||||| ||||| |||| |||
seq2  CTTATTCAG-TGTAATCGTGTCAGATATGCCTCAG-ACACACCTCTAATC  1093

seq1  ATCTCATTTAAATGCCTT-AGCAGCAATTGGAAATCACCAAAACCTTTTG  1146
      |||||||||||||||||| | |||| |||||||    || ||||| ||||
seq2  ATCTCATTTAAATGCCTTAATCAGC-ATTGGAA---TCCCAAACC-TTTG  1138

seq1  TATGACTCTTGTAAAGACAATAAGTTAAAACTCTTCTTTG  1186
      ||||||   || ||||||||| |||| |||||||||||||
seq2  TATGACCTCTGGAAAGACAAT-AGTT-AAACTCTTCTTTG  1176