BAC Information

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BAC

Clone NameB6Ng01-088G07
Chromosome2 (Build37)
Map Location 67,987,374 - 68,143,330
singlet/doubletdoublet
Overlap geneStk39
Upstream geneGm1322, Cmya3, LOC621171, LOC227995, B3galt1
Downstream geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088G07.bB6Ng01-088G07.g
ACCDH901255DH901256
length1,1941,144
definitionDH901255|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G07, 5' end.DH901256|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,987,374 - 67,988,597)(68,142,175 - 68,143,330)
sequence
gaattcctgatggaagactcttccctttgaaaatgtaaaagcaatttccc
attattttctataagttaatttttgaattagtagagggtttttattttta
tgtaagaaggaagaccaagaacagcaaattattcccactcagaaacaatc
ctattaatgtttccatgtgtgccctttgatggcaaacatacatagacata
ttttaaatatttaatatttaaatgccttcatatatataatatatacttat
atatgagtatatatacacccacacatacatgtgcatatagttttacatca
tgaatgatataatgctgtagcatgcaattctcaagtcaatatgtatcatt
aagttactttaaggcccttttcgacactaaagatcaatgactctatgatt
tgtttaggctagattgtcacatatggattgtttcagtacaagcagcagac
agcttaggagttggattcattgatactagcatgaaatagaactgtggcag
agggagataaggttaactacctgccaagtgcttttcatttaaggatacag
aaggttctcagagagcataaaagaatcaaagacatattacagatgtggtt
caataaatcacctgtgtctagcctacagtcaggaaagccacgttaggttt
ggagaaaagggcacagctgggtctctggaggagaaaacacattgtgtcta
gcctttaggatgaaagcagaccatgttttcacagagtgctcaaggttgtg
aattggaggcaagcaactaaagccagtttcaaaggtcgacgattatagat
gacaaatgacaacgtaagtacctgtccaactgaacccagacaggctttgg
tgcagtaagagttcagagaagagatgggcttccgatagcaaaacaaagca
agtgccacgggtgaggggtagtgtacagagtgtggttcccgctgaggaca
caccaggtctcacagcacagtcactttgcagcctggcttcaggtggaggc
aatggagcccactcacccttctagcattctgactgcgatatcggtaaaag
accgaggtgagtcacagaggtggggcagtgctggaatggagaatttttca
gcagtgaaggtctgaagaatttctactgacaatcataggcaaataacgcg
aagcatgtttcactgaaggtggacaatgatccttcaaagaaaag
gaattctttagacctgtagactcaggcttttaggaatacctcaccctatt
tattagtcatcttcataccagggggagagggttatgaaatagactgcgta
catgaggaaatagaacttttaggatcattccagagctctgaaatccctag
aacatctctctaaataaggtcgtattggaatatagacatcctagtggaag
ttaagaaacaagcttgaggctgagtgggtagcacaggcaaggagtctgtg
gagggagcactgatgagcagtgagttatataagtgcaagggaacccgtgt
gggcagaggtgggcaggatatgaggtcagacttagtgtgggagcctgtgt
agcttctgggaaagattttgccttcactgttagagagtgagaaagtctgt
gagcagaagaatgatgtgaactgagttaaactttaaaaacaatcactgca
gccatgttatggaaatatatgcaacgtttttacagcaatgtgctgttcag
agtttattttctagccctgcctattttgtgttgtgtgtgcttccatctat
atgggtattggggtgctgtgaatgaatggcccccataggctcatgggaag
tggcactatcaggaagtgtggccttgctggagcagatgtggtctggttgg
aagtgtgtcaaccgaggggtaggttttgaggtttccgaaattcaagctag
gcttattgtcactctctattctgtcacctgccgatacagatgtagaattc
tttgctgcctctccagtgctctgtctgcctgtctgttggcatgctttcca
tcatgatattgggctaaacccctggaaagtaatacagacagtgaaatgct
ttcctttgtaagagttgccatggtcatgatctcccttcacaacatagaca
tcctaactaagacctataatgtatttgcttaatttgaagaatgttcttct
gttatttttattgaagagctagtctatgccattgacttgggagactttta
tttcagaccaggtagtgacagatagaggcagtgtgacaggttttgagaaa
acttaagattactcagggttcgacagaaatattaatggagctctatcatt
tttttcctgaataaacagaaagttggtttcagttgggatgaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_67987374_67988597
seq2: B6Ng01-088G07.b_44_1237

seq1  GAATTCCTGATGGAAGACTCTTCCCTTTGAAAATGTAAAAGCAATTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATGGAAGACTCTTCCCTTTGAAAATGTAAAAGCAATTTCCC  50

seq1  ATTATTTTCTATAAGTTAATTTTAGAATTAGTAGAGGGTTTTTATTTTTA  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTATTTTCTATAAGTTAATTTTTGAATTAGTAGAGGGTTTTTATTTTTA  100

seq1  TGTAAGAAGGAAGACCAAGAACAGCAAATTATTCCCACTCAGAAACAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAGGAAGACCAAGAACAGCAAATTATTCCCACTCAGAAACAATC  150

seq1  CTATTAATGTTTCCATGTGTGCCCTTTGATGGCAAACATACATAGACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATGTTTCCATGTGTGCCCTTTGATGGCAAACATACATAGACATA  200

seq1  TTTTAAATATTTAATATTTAAATGCCTTCATATATATAATATATACTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATTTAATATTTAAATGCCTTCATATATATAATATATACTTAT  250

seq1  ATATGAGTATATATACACCCACACATACATGTGCATATAGTTTTACATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTATATATACACCCACACATACATGTGCATATAGTTTTACATCA  300

seq1  TGAATGATATAATGCTGTAGCATGCAATTCTCAAGTCAATATGTATCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATATAATGCTGTAGCATGCAATTCTCAAGTCAATATGTATCATT  350

seq1  AAGTTACTTTAAGGCCCTTTTCGACACTAAAGATCAATGACTCTATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTTTAAGGCCCTTTTCGACACTAAAGATCAATGACTCTATGATT  400

seq1  TGTTTAGGCTAGATTGTCACATATGGATTGTTTCAGTACAAGCAGCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGGCTAGATTGTCACATATGGATTGTTTCAGTACAAGCAGCAGAC  450

seq1  AGCTTAGGAGTTGGATTCATTGATACTAGCATGAAATAGAACTGTGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGAGTTGGATTCATTGATACTAGCATGAAATAGAACTGTGGCAG  500

seq1  AGGGAGATAAGGTTAACTACCTGCCAAGTGCTTTTCATTTAAGGATACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATAAGGTTAACTACCTGCCAAGTGCTTTTCATTTAAGGATACAG  550

seq1  AAGGTTCTCAGAGAGCATAAAAGAATCAAAGACATATTACAGATGTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTCAGAGAGCATAAAAGAATCAAAGACATATTACAGATGTGGTT  600

seq1  CAATAAATCACCTGTGTCTAGCCTACAGTCAGGAAAGCCACGTTAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATCACCTGTGTCTAGCCTACAGTCAGGAAAGCCACGTTAGGTTT  650

seq1  GGAGAAAAGGGCACAGCTGGGTCTCTGGAGGAGAAAACACATTGTGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGGGCACAGCTGGGTCTCTGGAGGAGAAAACACATTGTGTCTA  700

seq1  GCCTTTAGGATGAAAGCAGACCATGTTTTCACAGAGTGCTCAAGGTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGGATGAAAGCAGACCATGTTTTCACAGAGTGCTCAAGGTTGTG  750

seq1  AATTGGAGGCAAGCAACTAAAGCCAGTTTCAAAGGTCGACGATTATAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAGGCAAGCAACTAAAGCCAGTTTCAAAGGTCGACGATTATAGAT  800

seq1  GACAAATGACAACGTAAGTACCTGTCCAACTGAACCCAGACAGGCTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGACAACGTAAGTACCTGTCCAACTGAACCCAGACAGGCTTTGG  850

seq1  TGCAGTAAGAGTTCAGAGAAGAGATGGGCTTCCGATAGCAAAACAAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAAGAGTTCAGAGAAGAGATGGGCTTCCGATAGCAAAACAAAGCA  900

seq1  AGTGCCACGGGTGAGGGGTAGTGTACAGAGTGTGGTTCCCGCTGAGGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCACGGGTGAGGGGTAGTGTACAGAGTGTGGTTCCCGCTGAGGACA  950

seq1  CAACCAGGCCTCACAGCCACAGTACACTTTGCAGGCCTGGCTTCCAGGTG  1000
      | |||||| ||||||| |||||| ||||||||| ||||||||| ||||||
seq2  C-ACCAGGTCTCACAG-CACAGT-CACTTTGCA-GCCTGGCTT-CAGGTG  995

seq1  GAGGCAATGGAGCCCACTCACCCTTCTTAGCATTCTGACTGCGATATCGG  1050
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGGCAATGGAGCCCACTCACCCTTC-TAGCATTCTGACTGCGATATCGG  1044

seq1  TAAGAGACCGAGGTGAGTCACAGAGGTGGGGCAGTGCTGGAAATTGGAGA  1100
      ||| ||||||||||||||||||||||||||||||||||||||  ||||||
seq2  TAAAAGACCGAGGTGAGTCACAGAGGTGGGGCAGTGCTGGAA--TGGAGA  1092

seq1  TATTTATCAGCAAGTTGACAGTCTGGAAGAAATTTCTACTGACAAATCCC  1150
       |||| ||||||   |||  |||| |||| ||||||||||||| ||||  
seq2  -ATTTTTCAGCA--GTGAAGGTCT-GAAG-AATTTCTACTGAC-AATC--  1134

seq1  AATAGGGAAAATAACAGCAGAAAGCAAATGTTTCAGCATGAGAGGTGGAC  1200
       ||| || ||||||| ||   ||||  ||||||||   ||| ||||||||
seq2  -ATA-GGCAAATAAC-GC--GAAGC--ATGTTTCA--CTGA-AGGTGGAC  1174

seq1  AATGGATCCATTCAGAAAGAAAAG  1224
      ||| ||||| |||  |||||||||
seq2  AAT-GATCC-TTC--AAAGAAAAG  1194

seq1: chr2_68142175_68143330
seq2: B6Ng01-088G07.g_69_1212 (reverse)

seq1  GATTCAACCCCAACCTGAAACTCCAACTTTCTTGTCTACTTCAGG-AAAT  49
      |||||| |||  | ||||||  ||||||||| ||| || |||||| ||| 
seq2  GATTCATCCC--AACTGAAA--CCAACTTTC-TGTTTA-TTCAGGAAAAA  44

seq1  AATGATTAGAGCTCCATTAATATTTTCTGTCGAACCCTAGAGTAATCTTT  99
      ||||| |||||||||||||||| ||||||||||||||| |||||||| ||
seq2  AATGA-TAGAGCTCCATTAATA-TTTCTGTCGAACCCT-GAGTAATC-TT  90

seq1  AAGTATTTTCTCCAAAACTGGTCACACTGCCTCTATCTGTCACTACCCTG  149
      |||  |||||| ||||||  ||||||||||||||||||||||||| ||||
seq2  AAG--TTTTCT-CAAAACCTGTCACACTGCCTCTATCTGTCACTA-CCTG  136

seq1  GTCTG-AATAAAAGTCTCCCAGGTCAATGGCATAGACTAGCTCTTCAAT-  197
      ||||| ||||||||||||||| ||||||||||||||||||||||||||| 
seq2  GTCTGAAATAAAAGTCTCCCAAGTCAATGGCATAGACTAGCTCTTCAATA  186

seq1  AAGATAACAGAAGAACACTTCTTCAAATTAAGCAAATACA-TATAGGTCT  246
      || |||||||||||||| |||||||||||||||||||||| |||||||||
seq2  AAAATAACAGAAGAACA-TTCTTCAAATTAAGCAAATACATTATAGGTCT  235

seq1  TAGTTAGGATGTCTATTGTTGTGAAGGGAGATCATGACCATGGCAACTCT  296
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAGTTAGGATGTCTA-TGTTGTGAAGGGAGATCATGACCATGGCAACTCT  284

seq1  TACAAAGGAAAGCATTTCACTGTCTGTATTACTTTCCAGGGGTTTAGCCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGAAAGCATTTCACTGTCTGTATTACTTTCCAGGGGTTTAGCCC  334

seq1  AATATCATGATGGAAAGCATGCCAACAGACAGGCAGACAGAGCACTGGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATGATGGAAAGCATGCCAACAGACAGGCAGACAGAGCACTGGAG  384

seq1  AGGCAGCAAAGAATTCTACATCTGTATCGGCAGGTGACAGAATAGAGAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCAAAGAATTCTACATCTGTATCGGCAGGTGACAGAATAGAGAGT  434

seq1  GACAATAAGCCTAGCTTGAATTTCGGAAACCTCAAAACCTACCCCTCGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAAGCCTAGCTTGAATTTCGGAAACCTCAAAACCTACCCCTCGGT  484

seq1  TGACACACTTCCAACCAGACCACATCTGCTCCAGCAAGGCCACACTTCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACTTCCAACCAGACCACATCTGCTCCAGCAAGGCCACACTTCCT  534

seq1  GATAGTGCCACTTCCCATGAGCCTATGGGGGCCATTCATTCACAGCACCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGCCACTTCCCATGAGCCTATGGGGGCCATTCATTCACAGCACCC  584

seq1  CAATACCCATATAGATGGAAGCACACACAACACAAAATAGGCAGGGCTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCCATATAGATGGAAGCACACACAACACAAAATAGGCAGGGCTAG  634

seq1  AAAATAAACTCTGAACAGCACATTGCTGTAAAAACGTTGCATATATTTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACTCTGAACAGCACATTGCTGTAAAAACGTTGCATATATTTCC  684

seq1  ATAACATGGCTGCAGTGATTGTTTTTAAAGTTTAACTCAGTTCACATCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGGCTGCAGTGATTGTTTTTAAAGTTTAACTCAGTTCACATCAT  734

seq1  TCTTCTGCTCACAGACTTTCTCACTCTCTAACAGTGAAGGCAAAATCTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCTCACAGACTTTCTCACTCTCTAACAGTGAAGGCAAAATCTTT  784

seq1  CCCAGAAGCTACACAGGCTCCCACACTAAGTCTGACCTCATATCCTGCCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCTACACAGGCTCCCACACTAAGTCTGACCTCATATCCTGCCC  834

seq1  ACCTCTGCCCACACGGGTTCCCTTGCACTTATATAACTCACTGCTCATCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCCCACACGGGTTCCCTTGCACTTATATAACTCACTGCTCATCA  884

seq1  GTGCTCCCTCCACAGACTCCTTGCCTGTGCTACCCACTCAGCCTCAAGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCCTCCACAGACTCCTTGCCTGTGCTACCCACTCAGCCTCAAGCT  934

seq1  TGTTTCTTAACTTCCACTAGGATGTCTATATTCCAATACGACCTTATTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTAACTTCCACTAGGATGTCTATATTCCAATACGACCTTATTTA  984

seq1  GAGAGATGTTCTAGGGATTTCAGAGCTCTGGAATGATCCTAAAAGTTCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGTTCTAGGGATTTCAGAGCTCTGGAATGATCCTAAAAGTTCTA  1034

seq1  TTTCCTCATGTACGCAGTCTATTTCATAACCCTCTCCCCCTGGTATGAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCATGTACGCAGTCTATTTCATAACCCTCTCCCCCTGGTATGAAG  1084

seq1  ATGACTAATAAATAGGGTGAGGTATTCCTAAAAGCCTGAGTCTACAGGTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAATAAATAGGGTGAGGTATTCCTAAAAGCCTGAGTCTACAGGTC  1134

seq1  TAAAGAATTC  1156
      ||||||||||
seq2  TAAAGAATTC  1144