BAC Information

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BAC

Clone NameB6Ng01-088J09
Chromosome2 (Build37)
Map Location 87,051,028 - 87,051,962
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238
Downstream geneOlfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088J09.bB6Ng01-088J09.g
ACCDH901399DH901400
length1,232969
definitionDH901399|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J09, 5' end.DH901400|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccataaatatattgtttttaatagctgagtagtactccagtatgt
aaatgtaccacactttttgtattcattcctctgttgacagacatctgggt
tctttccagcttctggctattataaataaggctgctatgaagatagtgga
gcatgtgtccttattacaagttgggacatcctctggatatatgcccaggg
gaggaattgatggatcctccggtagtactatgtccaattttatgaggaac
cgccagactgatttccagagtggttgtaccagcttgcaatcccaccaaca
atggaggagtgttcctctttctccacatcctagccagcatcttctgtcaa
ctgaatttttgatcttggccattctgactggtgtgaggtggaatctcagg
gttgttttgattttcatttccctgatgataaaggatgatgaatatttttt
tcaggtgcttctcagccattcagttttcctcagttgagaattctttgttt
aggcctgtaccccatttttaaatagggttatttgattttctggagtccag
cttcttgagttatttgtatatattggatatcatcctgagtgaggtaaccc
aattataaaagaacacatatgatatgcactcactgataaatggatattat
cccagaaacttagcatacccaagatacaatttgtaaaacacatgcaactc
aagaagcagaaagatcaaagtatgcatggggaacaaaatacccatggaag
gagttatagagaccgagttctgagctgagacagaaggaaggaccatccag
agactaccccacccggggatccatctcataaacaaccacaaaacccagac
actattgcatattctagcaagatttagctgacaggaccctgatatagcta
tctcttgtgaggctactctagttcctggcaaatacagaagtggatgctca
cagtcagctattggatggaacacagggccccaatgaaggagctagagaag
tacccaaggagctgaagggatctgcacccatagtagaacaacactattga
actattcagtacaccccccaccaacacaacaaccaaccgctgtgtctcta
gctgcaaatgtaagcagggatgcctattctagtgggaaggaaagtctgtt
cttgtgacataatatgctagtacagggatgctaagtcatgagaacagatt
ggtgggttttgagtcaaacgggggagaggtta
gaattcagtgttaaaaatgatctattgaggcaatgaatacaaagaaataa
gtggttatataaagaatattgcgggggggggggtgtctggaaaaatagct
caatgataagggaagttgctactaaacttgatggtttgaggtcaatccct
ggattccacatgatgctgtgaaatgtgtacaacacatctcgctcatccag
cctacaaacacacacacacacacacacacacacacacacacacacacact
actgagagagagagagagagagagagagagagagagagagagagagagag
agagagagaagcaggggacagacttaatatgaatttaaaaaaatcgacag
gttgaaatgaaataaccctgtgtatttcatcagtaaaagggaatttaaat
atttcagatatgacaagtcggaaagtacttctaattcagatttaaaataa
tagtttttttataattattatttaatctttttttcaaactccagatttta
tccccgtattggcccaccctctgactgttccacatcccataactactccc
caccccagtgtctccactaggatgtccccaccctcccaccccaccccaag
cccaccagacctctaaattccctggggcctccagtctcttgagggttagg
agcatcatctcaaactgaaacccagacctgatgggggccttatatcagct
gatatatgctgcctggttggtggtcaagtgtctgagagatagtgggggtc
caagttaaattgagacttctggtcctcttacagggacacctgccctcctt
gatcttcttccatgtttttcttaattcaactacaggggtcaataacatct
gttcattggcaggttgcaaatatcaatatctgactctaggaccaaagtgc
tatcatctcaaaggagactccagggcctgaccactgatgctattgaatgc
tcaaaaaggggaactatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_87051028_87051962
seq2: B6Ng01-088J09.g_68_1006

seq1  GAATTCAGTGTTAAAAATGATCTATTGAGGCAATGAATACAAAGAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTAAAAATGATCTATTGAGGCAATGAATACAAAGAAATAA  50

seq1  GTGGTTATATAAAGAATATTGCGGGGGGGGGGGTGTCTGGAAAAATAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATATAAAGAATATTGCGGGGGGGGGGGTGTCTGGAAAAATAGCT  100

seq1  CAATGATAAGGGAAGTTGCTACTAAACTTGATGGTTTGAGGTCAATCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATAAGGGAAGTTGCTACTAAACTTGATGGTTTGAGGTCAATCCCT  150

seq1  GGATTCCACATGATGCTGTGAAATGTGTACAACACATCTCGCTCATCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCACATGATGCTGTGAAATGTGTACAACACATCTCGCTCATCCAG  200

seq1  CCTACAAACACACACACACACACACACACACACACACACACACACACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAACACACACACACACACACACACACACACACACACACACACACT  250

seq1  ACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  300

seq1  AGAGAGAGAAGCAGGGGACAGACTTAATATGAATTTAAAAAAATCGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAGCAGGGGACAGACTTAATATGAATTTAAAAAAATCGACAG  350

seq1  GTTGAAATGAAATAACCCTGTGTATTTCATCAGTAAAAGGGAATTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATGAAATAACCCTGTGTATTTCATCAGTAAAAGGGAATTTAAAT  400

seq1  ATTTCAGATATGACAAGTCGGAAAGTACTTCTAATTCAGATTTAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGATATGACAAGTCGGAAAGTACTTCTAATTCAGATTTAAAATAA  450

seq1  TAGTTTTTTTATAATTATTATTTAATCTTTTTTTCAAACTCCAGATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTTATAATTATTATTTAATCTTTTTTTCAAACTCCAGATTTTA  500

seq1  TCCCCGTATTGGCCCACCCTCTGACTGTTCCACATCCCATAACTACTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTATTGGCCCACCCTCTGACTGTTCCACATCCCATAACTACTCCC  550

seq1  CACCCCAGTGTCTCCACTAGGATGTCCCCACCCTCCCACCCCACCCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGTGTCTCCACTAGGATGTCCCCACCCTCCCACCCCACCCCAAG  600

seq1  CCCACCAGACCTCTAAATTCCCTGGGGCCTCCAGTCTCTTGAGGGTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGACCTCTAAATTCCCTGGGGCCTCCAGTCTCTTGAGGGTTAGG  650

seq1  AGCATCATCTCAAACTG-AACCCAGACCTGATGGGGGCCTTATATCAGCT  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCATCATCTCAAACTGAAACCCAGACCTGATGGGGGCCTTATATCAGCT  700

seq1  GATATATGCTGCCTGGTTGGTGGTCAAGTGTCTGAGAGATAGTGGGGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGCTGCCTGGTTGGTGGTCAAGTGTCTGAGAGATAGTGGGGGTC  750

seq1  CAAGTT-AATTGAGACTTCTGGTCCTCTTACAGGGACACCTG-CCTCC-T  796
      |||||| ||||||||||||||||||||||||||||||||||| ||||| |
seq2  CAAGTTAAATTGAGACTTCTGGTCCTCTTACAGGGACACCTGCCCTCCTT  800

seq1  GATCTTCTTCCATGTTTTTCTTAATTCAACTACA-GGGTCAATAACATCT  845
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GATCTTCTTCCATGTTTTTCTTAATTCAACTACAGGGGTCAATAACATCT  850

seq1  GTTCATTGGCAGGTTGCAAATATCAATATCTGACTCTAGGACCAAAGTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTCATTGGCAGGTTGCAAATATCAATATCTGACTCTAGGACCAAAGTGC  900

seq1  AATCAAGCTCAAAGGGAGACCCCAAGGCCTGA-CACTGAGG  935
       ||| | |||||| |||||| ||| ||||||| |||||| |
seq2  TATC-ATCTCAAA-GGAGACTCCAGGGCCTGACCACTGATG  939