BAC Information

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BAC

Clone NameB6Ng01-089A03
Chromosome2 (Build37)
Map Location 17,578,507 - 17,723,837
singlet/doubletdoublet
Overlap geneNebl
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneLOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089A03.bB6Ng01-089A03.g
ACCDH901705DH901706
length1,2231,127
definitionDH901705|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A03, 5' end.DH901706|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,722,604 - 17,723,837)(17,578,507 - 17,579,638)
sequence
gaattcaagacctttagaagagcagagcagcctacagtactggttcttaa
ccatgaagccatagctccagcccctcatttcacgtttaggacaaagtagg
gtgtatagttttataatccttttagagataaggaagttgagctttggaga
atttccatgctcaccacaggtcaagtaaggacagaactggaacacagtca
ctggcttcactcccgaaactcatgctctttatccatccttaaattccctc
ctgtgggtaacactatggggagaatttcctaggtacacttgaattatttt
tatgggctatcgaaattctcatttaaaaatgaaattggatctttgcatct
aaaaacagcacagcagggatctctaacccaagagatggaattatctgatg
agccatgaattggagagttgattccctcttgaaaaatattgtctgcaaag
tgcattattggtgcagctaactccagctggacacagagctgcacagtgta
ggtaagatatcaaaggaaaggctcttgctccacatgatctctgacaatgg
caggctaccacacagactggactttactctgtgccagttagacttctcca
catagcaaactctacgtcagcacactcttcccatttaaaaaatgaaagta
tgtgatatggtcaaaatcatctgctggtgtcagataaagctgtaatggaa
ggcctatctgcttaggtgctccagccccatcgcatatgtcccctctgatc
cacataggagacacagaagagaggtgaagctactgggaatgaaaccattt
cacttattctgcttgttctccagtgaatgaaagtgagctcaaagagaagt
gagacagggtcagtaaatgtctcagtgtgtaaaagtttctgctactttga
tgacctgagtttatccctgagagatggtgagtgaaaggagagtattggct
cctgaaagttgttccctctcctccatataataatacacacacacacacac
acacacacagcacacacacactcacacactaaattataaaaaaattaaat
gaggtacgaagcaatggctcaggtaagaacacttgactgtttcttctagg
aaatctagttcatttcctgtcctccatggcagcctcacaaatgcctggaa
actccagaattgtgaacctctctattgctatcatgccaggcaaacccttt
ggaaagccttcggagccgcttca
gaattccactgaaaactaattccaccttttgaggtcttggaaatggcttc
atgagtcctttggtgtgaaaccctggcctccacatgattgagattttata
aaacttaagtgctttaaataggatttatcatattccatcgctaaactaaa
acgactctcctggttatgaaagtcagaaactagaagttcaaattgaatta
agtggttcttggtacactctgaaataagtgactcaattttgtactaatct
aatatttgcaaaacaaaagacagcactaaagtactctctgtacaaattat
gtatccatcaagatgggttcagttatgctgtgaaaagaaatcacctcaga
tgttctctgacaagaggcctttctcactcaaatagaaatatacctagaag
agtttatgttcaccaatatatggggaaaagttcgtactttgggacttgat
ttcctatgtcagtactatgggttcttgcgtcaccaaggcaagtctcatgg
acactgtcggagtagctatgcaggaaggtgtactttctctgtagagaaca
acactgaaatatatgcgaaatcatgatgtagtctactacaattcctataa
aaggcagggtacagttatgggtcatccacaaagaataatagtagtactct
cttccatcacgaattgtgcctcagactcttaccccagtatttcatcacca
atggatgtgagtgagataaagcatgccaggcctttgtcaatgagccaatg
gacctaatcactgaggctcgtttagggaaaaggaaggctccatgcaagaa
gcgatctctgagctcaagatgtatgtgaatgatgcagcacatgaagcact
ttgtgacgcgatcattgcaggctttcttcattggggaagatgatgcctga
gccagtgtagtgctggacgtgggggaagaagtgagacatcggagatgctg
agggtcactctgagcagctcagttatgtggagctgagaaagaaacagaag
atggcattgggcattctgtttcagcagcctctgatggtgccatcaatcag
aggcagaagacggggctacagtgactttgaagtcaggcccagccatcctg
agttctgaatttgccctatggaaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_17722604_17723837
seq2: B6Ng01-089A03.b_44_1266 (reverse)

seq1  TGAAGCGGCCCCCAGAAGGCTTTCCACAGGTGTTTTGCCT-GCATGTATG  49
      ||||||||| ||  |||||||||||| ||  | ||||||| ||||| || 
seq2  TGAAGCGGCTCC--GAAGGCTTTCCAAAG--GGTTTGCCTGGCATG-ATA  45

seq1  ACTAT-GTGAGGGTCTCAGATCTTGGAG-TTCCAGGCATTTGTGA-GCTG  96
       | || | |||| || || ||  ||||| |||||||||||||||| ||||
seq2  GCAATAGAGAGGTTCACA-ATTCTGGAGTTTCCAGGCATTTGTGAGGCTG  94

seq1  CCATGTGAGGACAGGGAACTGAACCTGAGTCTCCTAGAAG-AACAGTC-A  144
      ||||| ||||||| |||| |||||  || | ||||||||| ||||||| |
seq2  CCATG-GAGGACA-GGAAATGAACTAGA-TTTCCTAGAAGAAACAGTCAA  141

seq1  GTGCTCTTAACCCCTGAGCCATTGCTTCGTACCTCATTTTAATTTTTTTT  194
      ||| |||||   |||||||||||||||||||||||||||  | |||||||
seq2  GTGTTCTTA---CCTGAGCCATTGCTTCGTACCTCATTT--AATTTTTTT  186

seq1  ATAAATTTAGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  244
      || |||||||||||||||||||||||||  ||||||||||||||||||||
seq2  AT-AATTTAGTGTGTGAGTGTGTGTGTG-CTGTGTGTGTGTGTGTGTGTG  234

seq1  TGTGTATTATTTATATGGAGGAGAGGGAACAACTTTCAGGAGCCAATACT  294
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTA-TTATATGGAGGAGAGGGAACAACTTTCAGGAGCCAATACT  283

seq1  CTCCTTTCACTCACCATCTCTCAGGGATAAAACTCAGGTCATC-AAGTAG  343
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  CTCCTTTCACTCACCATCTCTCAGGGAT-AAACTCAGGTCATCAAAGTAG  332

seq1  CAGAAACTTTTACACACTGAGACATTTACTGACCCTGTCTCACTTCTCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTTTTACACACTGAGACATTTACTGACCCTGTCTCACTTCTCTT  382

seq1  TGAGCTCACTTTCATTCACTGGAGAACAAGCAGAATAAGTGAAATGGTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCACTTTCATTCACTGGAGAACAAGCAGAATAAGTGAAATGGTTT  432

seq1  CATTCCCAGTAGCTTCACCTCTCTTCTGTGTCTCCTATGTGGATCAGAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCAGTAGCTTCACCTCTCTTCTGTGTCTCCTATGTGGATCAGAGG  482

seq1  GGACATATGCGATGGGGCTGGAGCACCTAAGCAGATAGGCCTTCCATTAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATATGCGATGGGGCTGGAGCACCTAAGCAGATAGGCCTTCCATTAC  532

seq1  AGCTTTATCTGACACCAGCAGATGATTTTGACCATATCACATACTTTCAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATCTGACACCAGCAGATGATTTTGACCATATCACATACTTTCAT  582

seq1  TTTTTAAATGGGAAGAGTGTGCTGACGTAGAGTTTGCTATGTGGAGAAGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGGGAAGAGTGTGCTGACGTAGAGTTTGCTATGTGGAGAAGT  632

seq1  CTAACTGGCACAGAGTAAAGTCCAGTCTGTGTGGTAGCCTGCCATTGTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGCACAGAGTAAAGTCCAGTCTGTGTGGTAGCCTGCCATTGTCA  682

seq1  GAGATCATGTGGAGCAAGAGCCTTTCCTTTGATATCTTACCTACACTGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATGTGGAGCAAGAGCCTTTCCTTTGATATCTTACCTACACTGTG  732

seq1  CAGCTCTGTGTCCAGCTGGAGTTAGCTGCACCAATAATGCACTTTGCAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGTGTCCAGCTGGAGTTAGCTGCACCAATAATGCACTTTGCAGA  782

seq1  CAATATTTTTCAAGAGGGAATCAACTCTCCAATTCATGGCTCATCAGATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTTCAAGAGGGAATCAACTCTCCAATTCATGGCTCATCAGATA  832

seq1  ATTCCATCTCTTGGGTTAGAGATCCCTGCTGTGCTGTTTTTAGATGCAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCTCTTGGGTTAGAGATCCCTGCTGTGCTGTTTTTAGATGCAAA  882

seq1  GATCCAATTTCATTTTTAAATGAGAATTTCGATAGCCCATAAAAATAATT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAATTTCATTTTTAAATGAGAATTTCGATAGCCCATAAAAATAATT  932

seq1  CAAGTGTACCTAGGAAATTCTCCCCATAGTGTTACCCACAGGAGGGAATT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTACCTAGGAAATTCTCCCCATAGTGTTACCCACAGGAGGGAATT  982

seq1  TAAGGATGGATAAAGAGCATGAGTTTCGGGAGTGAAGCCAGTGACTGTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGGATAAAGAGCATGAGTTTCGGGAGTGAAGCCAGTGACTGTGT  1032

seq1  TCCAGTTCTGTCCTTACTTGACCTGTGGTGAGCATGGAAATTCTCCAAAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCTGTCCTTACTTGACCTGTGGTGAGCATGGAAATTCTCCAAAG  1082

seq1  CTCAACTTCCTTATCTCTAAAAGGATTATAAAACTATACACCCTACTTTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTCCTTATCTCTAAAAGGATTATAAAACTATACACCCTACTTTG  1132

seq1  TCCTAAACGTGAAATGAGGGGCTGGAGCTATGGCTTCATGGTTAAGAACC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAACGTGAAATGAGGGGCTGGAGCTATGGCTTCATGGTTAAGAACC  1182

seq1  AGTACTGTAGGCTGCTCTGCTCTTCTAAAGGTCTTGAATTC  1234
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGTAGGCTGCTCTGCTCTTCTAAAGGTCTTGAATTC  1223

seq1: chr2_17578507_17579638
seq2: B6Ng01-089A03.g_71_1197

seq1  GAATTCCACTGATAACTAATTCCACCTTTTGAGGTCTTGGAAATGGCTTC  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGAAAACTAATTCCACCTTTTGAGGTCTTGGAAATGGCTTC  50

seq1  ATGAGTCCTTTGGTGTGAAACCCTGGCCTCCACATGATTGAGATTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCCTTTGGTGTGAAACCCTGGCCTCCACATGATTGAGATTTTATA  100

seq1  AAACTTAAGTGCTTTAAATAGGATTTATCATATTCCATCGCTAAACTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAGTGCTTTAAATAGGATTTATCATATTCCATCGCTAAACTAAA  150

seq1  ACGACTCTCCTGGTTATGAAAGTCAGAAACTAGAAGTTCAAATTGAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTCTCCTGGTTATGAAAGTCAGAAACTAGAAGTTCAAATTGAATTA  200

seq1  AGTGGTTCTTGGTACACTCTGAAATAAGTGACTCAATTTTGTACTAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTCTTGGTACACTCTGAAATAAGTGACTCAATTTTGTACTAATCT  250

seq1  AATATTTGCAAAACAAAAGACAGCACTAAAGTACTCTCTGTACAAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGCAAAACAAAAGACAGCACTAAAGTACTCTCTGTACAAATTAT  300

seq1  GTATCCATCAAGATGGGTTCAGTTATGCTGTGAAAAGAAATCACCTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATCAAGATGGGTTCAGTTATGCTGTGAAAAGAAATCACCTCAGA  350

seq1  TGTTCTCTGACAAGAGGCCTTTCTCACTCAAATAGAAATATACCTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTGACAAGAGGCCTTTCTCACTCAAATAGAAATATACCTAGAAG  400

seq1  AGTTTATGTTCACCAATATATGGGGAAAAGTTCGTACTTTGGGACTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATGTTCACCAATATATGGGGAAAAGTTCGTACTTTGGGACTTGAT  450

seq1  TTCCTATGTCAGTACTATGGGTTCTTGCGTCACCAAGGCAAGTCTCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGTCAGTACTATGGGTTCTTGCGTCACCAAGGCAAGTCTCATGG  500

seq1  ACACTGTCGGAGTAGCTATGCAGGAAGGTGTACTTTCTCTGTAGAGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCGGAGTAGCTATGCAGGAAGGTGTACTTTCTCTGTAGAGAACA  550

seq1  ACACTGAAATATATGCGAAATCATGATGTAGTCTACTACAATTCCTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAATATATGCGAAATCATGATGTAGTCTACTACAATTCCTATAA  600

seq1  AAGGCAGGGTACAGTTATGGGTCATCCACAAAGAATAATAGTAGTACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGGTACAGTTATGGGTCATCCACAAAGAATAATAGTAGTACTCT  650

seq1  CTTCCATCACGAATTGTGCCTCAGACTCTTACCCCAGTATTTCATCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCACGAATTGTGCCTCAGACTCTTACCCCAGTATTTCATCACCA  700

seq1  ATGGATGTGAGTGAGATAAAGCATGCCAGGCCTTTGTCAATGAGCCAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTGAGTGAGATAAAGCATGCCAGGCCTTTGTCAATGAGCCAATG  750

seq1  GACCTAATCACTGAGGCTCGTTTAGGGAAAAGGAAGGCTCCATGCAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAATCACTGAGGCTCGTTTAGGGAAAAGGAAGGCTCCATGCAAGAA  800

seq1  GCGATCTCTGAGCTCAAGATGTATGTGAATGATGCAGCACATGAAGCAC-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCGATCTCTGAGCTCAAGATGTATGTGAATGATGCAGCACATGAAGCACT  850

seq1  TTGTGACGCGATCATTGCAGGCTATCCTCATTGGGGAAGATGATGCCTGA  899
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  TTGTGACGCGATCATTGCAGGCTTTCTTCATTGGGGAAGATGATGCCTGA  900

seq1  GCCAGTGTAGTGCTGGACGTGGGGGAAGAAGTGAGACATCGGAGATGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGTAGTGCTGGACGTGGGGGAAGAAGTGAGACATCGGAGATGCTG  950

seq1  AGGGGTCACTCTGAGCAAGCTCAGTTATGTGGAGCTGAAGAAAGAAACAA  999
      | |||||||||||||| |||||||||||||||||||| ||||||||||  
seq2  A-GGGTCACTCTGAGC-AGCTCAGTTATGTGGAGCTG-AGAAAGAAAC--  995

seq1  GAAAAGATGGCATTGGGCATTCTGTTTCAGCAGCCTCTGATGGTGCCAAC  1049
       | ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  -AGAAGATGGCATTGGGCATTCTGTTTCAGCAGCCTCTGATGGTGCCATC  1044

seq1  CATCAGGAGGCAGAAGGACGGGGTCTACAGGTGACTTTGAGGTCAGGCCC  1099
       |||| ||||||||| ||||||| ||||| |||||||||| |||||||||
seq2  AATCA-GAGGCAGAA-GACGGGG-CTACA-GTGACTTTGAAGTCAGGCCC  1090

seq1  AGGCAT-CTGAG-TCTG-AGTTGCCC-ATGGAAAGCA  1132
      || ||| ||||| |||| | |||||| ||||||||||
seq2  AGCCATCCTGAGTTCTGAATTTGCCCTATGGAAAGCA  1127